Template:DRAAccessionNumbers: Difference between revisions
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{{#vardefine:DRA_sample_accession_content|{{{ | {{#vardefine:DRA_sample_accession_content|{{{2}}}}}{{#vardefine:accession_numbers_content|{{{3}}}}}{{#vardefine:library_ids_content|{{{4}}}}}{{#arraydefine:DRA_sample_accession_array|{{#var:DRA_sample_accession_content}}|!}}{{#arraydefine:accession_numbers_array|{{#var:accession_numbers_content}}|!}}{{#arraydefine:library_ids_array|{{#var:library_ids_content}}|!}}{{#arraymerge:new_key |accession_numbers_array |library_ids_array}}{{#arraydefine:headers|Library id,Method,Exp. accession id,Run accession id|;}}{{#arraydefine:headers_sample_access_numbers|Method,Sample accession id|;}}{{#arraydefine:y-1|}}{{#arraydefine:k-1|}}{{#vardefine:e-1|}}{{#vardefine:t-1|}}{{#vardefine:header_species1|{{#switch: {{{5}}} | Human (Homo sapiens) = Hg19 | Mouse (Mus musculus) = Mm9 }}}}{{#vardefine:header_species2|{{#switch: {{{5}}} | Human (Homo sapiens) = Hg38 | Mouse (Mus musculus) = Mm10 }}}}{{#loop: k | ||
{{#arraydefine:headers_sample_access_numbers|Method,Sample accession id|;}}{{#arraydefine:y-1|}}{{#arraydefine:k-1|}}{{#vardefine:e-1|}}{{#vardefine:t-1|}}{{#loop: k | |||
| 0 | | 0 | ||
| {{#arraysize:accession_numbers_array}} | | {{#arraysize:accession_numbers_array}} | ||
| <nowiki/> | | <nowiki/> | ||
{{#arraydefine:tmp{{#var:k}}|{{#arrayindex:accession_numbers_array |{{#var:k}}}}}}{{#arraydefine:tmp_{{#var:k}}|{{#arrayprint:tmp{{#var:k}}}}|;}} | {{#arraydefine:tmp{{#var:k}}|{{#arrayindex:accession_numbers_array |{{#var:k}}}}}}{{#arraydefine:tmp_{{#var:k}}|{{#arrayprint:tmp{{#var:k}}}}|;}}{{#loop: m | ||
{{#loop: m | |||
| 0 | | 0 | ||
| {{#arraysize:tmp_{{#var:k}}}} | | {{#arraysize:tmp_{{#var:k}}}} | ||
| <nowiki/> | | <nowiki/> | ||
{{#switch: {{#var:m}}| 1 ={{#vardefine:link|experiment}}|2={{#vardefine:link|run}}|{{#vardefine:link|}} }}{{#vardefine:tmpe|{{#arrayindex:tmp_{{#var:k}}|{{#var:m}} }} }}{{#arraydefine:cont|{{#var:tmpe}}|,}}{{#ifexpr: {{#arraysize:cont}} > 1 |{{#loop: t | {{#switch: {{#var:m}}| 1 ={{#vardefine:link|sra-experiment}}|2={{#vardefine:link|sra-run}}|{{#vardefine:link|}} }}{{#vardefine:tmpe|{{#arrayindex:tmp_{{#var:k}}|{{#var:m}} }} }}{{#arraydefine:cont|{{#var:tmpe}}|,}}{{#ifexpr: {{#arraysize:cont}} > 1 |{{#loop: t | ||
| 0 | | 0 | ||
| {{#arraysize:cont}} | | {{#arraysize:cont}} | ||
| <nowiki/> | | <nowiki/> | ||
{{#vardefine:tmpinternal|{{#arrayindex:cont|{{#var:t}} }} }} | {{#vardefine:tmpinternal|{{#arrayindex:cont|{{#var:t}} }} }} | ||
{{#arraydefine:tmp__internal{{#var:t}}|{{#switch: {{#var:m}}| 1 = [ | {{#arraydefine:tmp__internal{{#var:t}}|{{#switch: {{#var:m}}| 1 = [https://ddbj.nig.ac.jp/resource/{{#var:link}}/{{#var:tmpinternal}} {{#var:tmpinternal}}]<br> | 2 = [https://ddbj.nig.ac.jp/resource/{{#var:link}}/{{#var:tmpinternal}} {{#var:tmpinternal}}]<br> | {{#var:tmpinternal}}<br>}} }} | ||
{{#arraymerge:t{{#var:t}}|t{{#expr:{{#var:t}}-1}}|tmp__internal{{#var:t}} }} | {{#arraymerge:t{{#var:t}}|t{{#expr:{{#var:t}}-1}}|tmp__internal{{#var:t}} }} | ||
{{#vardefine:out|{{#arrayprint:t{{#var:t}}| }} }} | {{#vardefine:out|{{#arrayprint:t{{#var:t}}| }} }} | ||
| Line 21: | Line 19: | ||
{{#arraydefine:tmp__{{#var:m}}|{{#arrayprint:out_without_delimiter}} }} | {{#arraydefine:tmp__{{#var:m}}|{{#arrayprint:out_without_delimiter}} }} | ||
| | | | ||
{{#arraydefine:tmp__{{#var:m}}|{{#switch: {{#var:m}}| 1 = [ | {{#arraydefine:tmp__{{#var:m}}|{{#switch: {{#var:m}}| 1 = [https://ddbj.nig.ac.jp/resource/{{#var:link}}/{{#var:tmpe}} {{#var:tmpe}}] | 2 = [https://ddbj.nig.ac.jp/resource/{{#var:link}}/{{#var:tmpe}} {{#var:tmpe}}] | {{#var:tmpe}}}} }} }} | ||
{{#arraymerge:y{{#var:m}}|y{{#expr:{{#var:m}}-1}}|tmp__{{#var:m}} }} | {{#arraymerge:y{{#var:m}}|y{{#expr:{{#var:m}}-1}}|tmp__{{#var:m}} }} | ||
}}<!--end of loop m --> | }}<!--end of loop m --> | ||
| Line 29: | Line 27: | ||
{{#arraydefine:kekka|{{#sub:{{#var:e{{#var:k}}}}|1|{{#len:{{#var:e{{#var:k}}}} }} }}|!}} | {{#arraydefine:kekka|{{#sub:{{#var:e{{#var:k}}}}|1|{{#len:{{#var:e{{#var:k}}}} }} }}|!}} | ||
{|class="wikitable mw-outercollapse mw-collapsible mw-collapsed" | {|class="wikitable mw-outercollapse mw-collapsible mw-collapsed" | ||
!Accession numbers | !{{{1}}} Accession numbers | ||
|- | |- | ||
|<table cellspacing="0" border="1"><tr><th>{{#replace:{{#arrayprint:headers_sample_access_numbers}}|,|</th><th></th><th>}}</tr>{{#loop: j | |<table cellspacing="0" border="1"><tr><th>{{#replace:{{#arrayprint:headers_sample_access_numbers}}|,|</th><th></th><th>}}</tr>{{#loop: j | ||
| Line 35: | Line 33: | ||
| {{#arraysize:DRA_sample_accession_array}} | | {{#arraysize:DRA_sample_accession_array}} | ||
| <nowiki/> | | <nowiki/> | ||
{{#vardefine:EXPMETHOD|{{#explode:{{#arrayindex:DRA_sample_accession_array| {{#var:j}} }}|@|0}} }}{{#vardefine:EXPMETHOD_URLed|{{#if:{{#var:EXPMETHOD}}|'''{{#var:EXPMETHOD}}'''<html> </html>|}}{{#vardefine:LIBID|{{#explode:{{#arrayindex:DRA_sample_accession_array| {{#var:j}} }}|@|1}} }}}}{{#vardefine:LIBID_URLed|{{#if:{{#var:LIBID}}|[ | {{#vardefine:EXPMETHOD|{{#explode:{{#arrayindex:DRA_sample_accession_array| {{#var:j}} }}|@|0}} }}{{#vardefine:EXPMETHOD_URLed|{{#if:{{#var:EXPMETHOD}}|'''{{#var:EXPMETHOD}}'''<html> </html>|}}{{#vardefine:LIBID|{{#explode:{{#arrayindex:DRA_sample_accession_array| {{#var:j}} }}|@|1}} }}}}{{#vardefine:LIBID_URLed|{{#if:{{#var:LIBID}}|[https://ddbj.nig.ac.jp/resource/biosample/{{#var:LIBID}} [[Sample accession::{{#var:LIBID}}]]]|}}}} | ||
<tr><td>{{#var:EXPMETHOD_URLed}}<td> <td>{{#var:LIBID_URLed}}</td><tr> | <tr><td>{{#var:EXPMETHOD_URLed}}<td> <td>{{#var:LIBID_URLed}}</td><tr> | ||
}} </table> | }} </table> | ||
{|class="wikitable mw-collapsible mw-innercollapse" style="width:auto" | {|class="wikitable mw-collapsible mw-innercollapse" style="width:auto" | ||
!Library accession numbers | !Library accession numbers | ||
| Line 47: | Line 44: | ||
| {{#arraysize:kekka}} | | {{#arraysize:kekka}} | ||
| <nowiki/> | | <nowiki/> | ||
{{#vardefine:tmp_acc_num|{{#arrayindex:kekka |{{#var:j}}}}}}{{#arraydefine:tmp_acc_num_arry|{{#var:tmp_acc_num}}|;}}{{#arrayslice:first_slice_tmp_acc_num_arry|tmp_acc_num_arry|0|1}}{{#arrayslice:second_slice_tmp_acc_num_arry|tmp_acc_num_arry|1| | {{#vardefine:tmp_acc_num|{{#arrayindex:kekka |{{#var:j}}}}}}{{#arraydefine:tmp_acc_num_arry|{{#var:tmp_acc_num}}|;}}{{#arrayslice:first_slice_tmp_acc_num_arry|tmp_acc_num_arry|0|1}}{{#arrayslice:second_slice_tmp_acc_num_arry|tmp_acc_num_arry|1|2}}{{#vardefine:tmp_lib_id |{{#arrayindex:library_ids_array|{{#var:j}}}}}}{{#arraydefine:tmp_lib_id_arry|{{#var:tmp_lib_id}}}}{{#arraymerge:x{{#var:j}}|tmp_lib_id_arry|first_slice_tmp_acc_num_arry |second_slice_tmp_acc_num_arry}}<tr><td>{{#replace:{{#arrayprint:x{{#var:j}}}}|,|</td><td></td><td>}}</tr> | ||
}} | }} | ||
</table> | </table> | ||
<!-- bam&ctss accession ID table (Hg19 Mm9) --> | |||
{|class="wikitable mw-collapsible mw-innercollapse" style="width:auto" | |||
!Accession ID {{#var:header_species1}} | |||
|- | |||
|<table cellspacing="0" border="1"><tr><th>Library id</th><th></th><th>BAM</th><th></th><th>CTSS</th></tr> | |||
{{#loop: p | |||
| 0 | |||
| {{#arraysize:kekka}} | |||
| <nowiki/> | |||
{{#vardefine:tmp_acc_num|{{#arrayindex:kekka |{{#var:p}}}}}}{{#arraydefine:tmp_acc_num_arry|{{#var:tmp_acc_num}}|;}}{{#arrayslice:first_acc_num_arry|tmp_acc_num_arry|3|2}}{{#vardefine:tmp_lib_id |{{#arrayindex:library_ids_array|{{#var:p}}}}}}{{#arraydefine:tmp_lib_id_arry|{{#var:tmp_lib_id}}}}{{#arraymerge:x{{#var:p}}|tmp_lib_id_arry|first_acc_num_arry}}<tr><td>{{#replace:{{#arrayprint:x{{#var:p}}}}|,|</td><td></td><td>}}</tr> | |||
}} | |||
</table> | |||
|} | |||
<!-- end of bam&ctss accession ID table --> | |||
<!-- bam&ctss accession ID table (Hg38 Mm10) --> | |||
{{#vardefine:kekka_firstline|{{#arrayindex:kekka|0}}}}{{#arraydefine:kekka_firstarry|{{#var:kekka_firstline}}|;}}{{#vardefine:disp|{{#if:{{#arrayindex:kekka_firstarry|5}}||display:none}}}}{|class="wikitable mw-collapsible mw-innercollapse" style="width:auto;{{#var:disp}}" | |||
!Accession ID {{#var:header_species2}} | |||
|- | |||
|<table cellspacing="0" border="1"><tr><th>Library id</th><th></th><th>BAM</th><th></th><th>CTSS</th></tr> | |||
{{#loop: q | |||
| 0 | |||
| {{#arraysize:kekka}} | |||
| <nowiki/> | |||
{{#vardefine:tmp_acc_num|{{#arrayindex:kekka |{{#var:q}}}}}}{{#arraydefine:tmp_acc_num_arry|{{#var:tmp_acc_num}}|;}}{{#arrayslice:second_acc_num_arry|tmp_acc_num_arry|5|2}}{{#vardefine:tmp_lib_id |{{#arrayindex:library_ids_array|{{#var:q}}}}}}{{#arraydefine:tmp_lib_id_arry|{{#var:tmp_lib_id}}}}{{#arraymerge:x{{#var:q}}|tmp_lib_id_arry|second_acc_num_arry}}<tr><td>{{#replace:{{#arrayprint:x{{#var:q}}}}|,|</td><td></td><td>}}</tr> | |||
}} | |||
</table> | |||
|} | |||
<!-- end of bam&ctss accession ID table --> | |||
|} | |} | ||
|} | |} | ||
Latest revision as of 13:46, 4 April 2022
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