CL:1000279: Difference between revisions
From FANTOM5_SSTAR
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|located_in= | |located_in= | ||
|name=smooth muscle cell of large intestine | |name=smooth muscle cell of large intestine | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0000059 | |part_of=UBERON:0000059 | ||
Latest revision as of 16:46, 12 September 2014
| Name: | smooth muscle cell of large intestine | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A smooth muscle cell that is part of the large intestine." [GOC:tfm] | ||
| Xrefs: |
| ||
| Synonyms: | "non-striated muscle fiber of large intestine" EXACT [FMA:15653] |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0002504(enteric smooth muscle cell) |
|---|---|
| part_of: | UBERON:0000059(large intestine) |
Children
| is a: | CL:1000280 (smooth muscle cell of colon) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11239-116D6 (Smooth Muscle Cells - Colonic, donor1)
- 11320-117D6 (Smooth Muscle Cells - Colonic, donor2)
- 11396-118D1 (Smooth Muscle Cells - Colonic, donor3)
Mouse (Mus musculus)
- 11239-116D6 (Smooth Muscle Cells - Colonic, donor1)
- 11320-117D6 (Smooth Muscle Cells - Colonic, donor2)
- 11396-118D1 (Smooth Muscle Cells - Colonic, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:1000279 (smooth muscle cell of large intestine), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 8.98e-131 | FFCP PHASE2:Hg19::chr12:52473515..52473526,+#_764e63356cf2d72be62c8ca180963b52 | p3@ENST00000546390, p3@uc009zme.1 |
| 8.98e-131 | FFCP PHASE1:Hg19::chr12:52473515..52473526,+#_764e63356cf2d72be62c8ca180963b52 | p3@ENST00000546390, p3@uc009zme.1 |
| 1.11e-98 | FFCP PHASE2:Hg19::chr20:49269691..49269695,+#_43d9b3317402fba7a60179368c745a19 | p1@ENST00000435177 |
| 1.11e-98 | FFCP PHASE1:Hg19::chr20:49269691..49269695,+#_43d9b3317402fba7a60179368c745a19 | p1@ENST00000435177 |
| 4.71e-66 | FFCP PHASE1:Hg19::chr12:52473502..52473510,+#_15cda13c14e324cc71c2cf7be77cc50b | p2@ENST00000546390, p2@uc009zme.1 |
| 4.71e-66 | FFCP PHASE2:Hg19::chr12:52473502..52473510,+#_15cda13c14e324cc71c2cf7be77cc50b | p2@ENST00000546390, p2@uc009zme.1 |
| 7.24e-50 | FFCP PHASE2:Hg19::chr3:177652390..177652395,+#_3bcec30055f13e1b7e4e9216ec3c1d5b | p1@ENST00000450500 |
| 7.24e-50 | FFCP PHASE1:Hg19::chr3:177652390..177652395,+#_3bcec30055f13e1b7e4e9216ec3c1d5b | p1@ENST00000450500 |
| 6.47e-47 | FFCP PHASE2:Hg19::chr13:94958134..94958164,+#_7d31b260e28c624304ace2663207e0a4 | p@chr13:94958134..94958164, + |
| 6.47e-47 | FFCP PHASE1:Hg19::chr13:94958134..94958164,+#_7d31b260e28c624304ace2663207e0a4 | p@chr13:94958134..94958164, + |
| 8.55e-40 | FFCP PHASE1:Hg19::chr2:114300263..114300269,-#_6933fb01cb3946758af3fe70952a3106 | p1@ENST00000416758 |
| 8.55e-40 | FFCP PHASE2:Hg19::chr2:114300263..114300269,-#_6933fb01cb3946758af3fe70952a3106 | p1@ENST00000416758 |
| 9.77e-40 | FFCP PHASE2:Hg19::chr16:86229885..86229905,+#_d742aa849fa0a3749aabf535486647cc | p@chr16:86229885..86229905, + |
| 9.77e-40 | FFCP PHASE1:Hg19::chr16:86229885..86229905,+#_d742aa849fa0a3749aabf535486647cc | p@chr16:86229885..86229905, + |
| 2.95e-37 | FFCP PHASE1:Hg19::chr16:86229916..86229943,+#_d752f00beaa97a52e277c8a8a2244654 | p@chr16:86229916..86229943, + |
| 2.95e-37 | FFCP PHASE2:Hg19::chr16:86229916..86229943,+#_d752f00beaa97a52e277c8a8a2244654 | p@chr16:86229916..86229943, + |
| 9.1e-34 | FFCP PHASE1:Hg19::chr6:31304866..31304870,-#_72642ba2ddd8bfbb658edd0056c2b639 | p@chr6:31304866..31304870, - |
| 9.1e-34 | FFCP PHASE2:Hg19::chr6:31304866..31304870,-#_72642ba2ddd8bfbb658edd0056c2b639 | p@chr6:31304866..31304870, - |
| 4.53e-30 | FFCP PHASE2:Hg19::chr8:120079398..120079416,+#_a6b97eee6619a27adc517cb2fc15bf7f | p3@COLEC10 |
| 4.53e-30 | FFCP PHASE1:Hg19::chr8:120079398..120079416,+#_a6b97eee6619a27adc517cb2fc15bf7f | p3@COLEC10 |
| 4.07e-27 | FFCP PHASE2:Hg19::chr6:134210625..134210636,+#_e9d2183a6e0c904cb65cece35502d752 | p6@TCF21 |
| 4.07e-27 | FFCP PHASE1:Hg19::chr6:134210625..134210636,+#_e9d2183a6e0c904cb65cece35502d752 | p6@TCF21 |
| 7.88e-27 | FFCP PHASE2:Hg19::chr18:77557973..77557984,+#_36c7694a628d030e525cdfe4584eaf42 | p@chr18:77557973..77557984, + |
| 7.88e-27 | FFCP PHASE1:Hg19::chr18:77557973..77557984,+#_36c7694a628d030e525cdfe4584eaf42 | p@chr18:77557973..77557984, + |
| 5.75e-26 | FFCP PHASE2:Hg19::chr1:78401534..78401545,+#_106c09c44cfd205163a2a33e2cb877ab | p@chr1:78401534..78401545, + |
| 5.75e-26 | FFCP PHASE1:Hg19::chr1:78401534..78401545,+#_106c09c44cfd205163a2a33e2cb877ab | p@chr1:78401534..78401545, + |
| 2.34e-25 | FFCP PHASE2:Hg19::chr15:50149374..50149385,+#_682e37c41339608c7c235a9367aca2c6 | p@chr15:50149374..50149385, + |
| 2.34e-25 | FFCP PHASE1:Hg19::chr15:50149374..50149385,+#_682e37c41339608c7c235a9367aca2c6 | p@chr15:50149374..50149385, + |
| 2.64e-25 | FFCP PHASE1:Hg19::chr3:150966773..150966784,-#_8724c294241c832513118952db3997d0 | p7@P2RY14 |
| 2.64e-25 | FFCP PHASE2:Hg19::chr7:136759435..136759447,+#_8724c294241c832513118952db3997d0 | p@chr7:136759435..136759447, + |
| 2.64e-25 | FFCP PHASE1:Hg19::chr7:136759435..136759447,+#_8724c294241c832513118952db3997d0 | p@chr7:136759435..136759447, + |
| 2.64e-25 | FFCP PHASE2:Hg19::chr3:150966773..150966784,-#_8724c294241c832513118952db3997d0 | p7@P2RY14 |
| 6.22e-25 | FFCP PHASE2:Hg19::chr5:10237680..10237685,+#_24a0e0e49f5bd24873d109a4904e5378 | p@chr5:10237680..10237685, + |
| 6.22e-25 | FFCP PHASE1:Hg19::chr5:10237680..10237685,+#_24a0e0e49f5bd24873d109a4904e5378 | p@chr5:10237680..10237685, + |
| 3.62e-24 | FFCP PHASE2:Hg19::chr4:1167293..1167308,-#_ce44802e925142afcc5f16707311fecc | p18@SPON2 |
| 3.62e-24 | FFCP PHASE1:Hg19::chr4:1167293..1167308,-#_ce44802e925142afcc5f16707311fecc | p18@SPON2 |
| 5.35e-24 | FFCP PHASE2:Hg19::chr16:86229728..86229756,+#_916086070a76dd37063f01018c3fa5ac | p@chr16:86229728..86229756, + |
| 5.35e-24 | FFCP PHASE1:Hg19::chr16:86229728..86229756,+#_916086070a76dd37063f01018c3fa5ac | p@chr16:86229728..86229756, + |
| 1.88e-23 | FFCP PHASE2:Hg19::chr3:150966718..150966738,-#_1edef52d4c30e099a2134103add7038f | p9@P2RY14 |
| 1.88e-23 | FFCP PHASE1:Hg19::chr3:150966718..150966738,-#_1edef52d4c30e099a2134103add7038f | p9@P2RY14 |
| 2.62e-23 | FFCP PHASE2:Hg19::chr8:109482025..109482032,+#_915fe1f0d23647ac373c238534556083 | p@chr8:109482025..109482032, + |
| 2.62e-23 | FFCP PHASE1:Hg19::chr8:109482025..109482032,+#_915fe1f0d23647ac373c238534556083 | p@chr8:109482025..109482032, + |
| 3.09e-23 | FFCP PHASE2:Hg19::chr4:120549834..120549846,-#_884054d9527720b1eae8dcf40c221816 | p15@PDE5A |
| 3.09e-23 | FFCP PHASE1:Hg19::chr4:120549834..120549846,-#_884054d9527720b1eae8dcf40c221816 | p15@PDE5A |
| 4.66e-22 | FFCP PHASE2:Hg19::chr9:113137742..113137746,-#_bb01ba4d2abb5f8012ae33fcc4087269 | p@chr9:113137742..113137746, - |
| 4.66e-22 | FFCP PHASE1:Hg19::chr9:113137742..113137746,-#_bb01ba4d2abb5f8012ae33fcc4087269 | p@chr9:113137742..113137746, - |
| 1.59e-21 | FFCP PHASE2:Hg19::chr3:150966697..150966714,-#_87620a8741c515c5b3b84394c899b3d3 | p8@P2RY14 |
| 1.59e-21 | FFCP PHASE1:Hg19::chr3:150966697..150966714,-#_87620a8741c515c5b3b84394c899b3d3 | p8@P2RY14 |
| 1.76e-21 | FFCP PHASE2:Hg19::chr3:150966861..150966873,-#_3e9473d2a163b3959dda61557f0a24f8 | p6@P2RY14 |
| 1.76e-21 | FFCP PHASE1:Hg19::chr3:150966861..150966873,-#_3e9473d2a163b3959dda61557f0a24f8 | p6@P2RY14 |
| 2.67e-21 | FFCP PHASE1:Hg19::chr18:77557932..77557943,+#_b88337052132f1f79c0ad7c10b30407c | p@chr18:77557932..77557943, + |
| 2.67e-21 | FFCP PHASE2:Hg19::chr18:77557932..77557943,+#_b88337052132f1f79c0ad7c10b30407c | p@chr18:77557932..77557943, + |
| 5.41e-21 | FFCP PHASE1:Hg19::chr1:246151834..246151867,-#_eece09d7a9b601ab5f5dd8b008d87246 | p4@SMYD3 |
| 5.41e-21 | FFCP PHASE2:Hg19::chr1:246151834..246151867,-#_eece09d7a9b601ab5f5dd8b008d87246 | p4@SMYD3 |
| 7.12e-21 | FFCP PHASE2:Hg19::chr5:52096217..52096226,+#_ae864cca13630945f696310037eeb938 | p11@PELO |
| 7.12e-21 | FFCP PHASE1:Hg19::chr5:52096217..52096226,+#_ae864cca13630945f696310037eeb938 | p11@PELO |
| 7.42e-21 | FFCP PHASE2:Hg19::chr5:34915414..34915420,+#_cfaadc9a9f79224862c39013abaef91e | p4@BRIX1 |
| 7.42e-21 | FFCP PHASE1:Hg19::chr5:34915414..34915420,+#_cfaadc9a9f79224862c39013abaef91e | p4@BRIX1 |
| 1.07e-20 | FFCP PHASE2:Hg19::chr8:120079417..120079436,+#_cf7507555c6b022a4127fa4ae357e0fe | p2@COLEC10 |
| 1.07e-20 | FFCP PHASE1:Hg19::chr8:120079417..120079436,+#_cf7507555c6b022a4127fa4ae357e0fe | p2@COLEC10 |
| 5.27e-20 | FFCP PHASE2:Hg19::chr6:134210095..134210147,-#_faf94c19f3081d07154ca9f973d5b29f | p1@uc003qeg.1 |
| 5.27e-20 | FFCP PHASE1:Hg19::chr6:134210095..134210147,-#_faf94c19f3081d07154ca9f973d5b29f | p1@uc003qeg.1 |
| 6.54e-20 | FFCP PHASE2:Hg19::chr9:118701892..118701903,+#_ce5097d6a004328c7dd678b230732793 | p@chr9:118701892..118701903, + |
| 6.54e-20 | FFCP PHASE1:Hg19::chr9:118701892..118701903,+#_ce5097d6a004328c7dd678b230732793 | p@chr9:118701892..118701903, + |
| 8.67e-20 | FFCP PHASE2:Hg19::chr15:50193489..50193500,-#_f4239d1f5d991a5ea6820090e9b8232b | p@chr15:50193489..50193500, - |
| 8.67e-20 | FFCP PHASE1:Hg19::chr15:50193489..50193500,-#_f4239d1f5d991a5ea6820090e9b8232b | p@chr15:50193489..50193500, - |
| 6.34e-19 | FFCP PHASE2:Hg19::chr9:118701819..118701835,+#_9d3a88636b2131afc00a6009f2afbf28 | p@chr9:118701819..118701835, + |
| 6.34e-19 | FFCP PHASE1:Hg19::chr9:118701819..118701835,+#_9d3a88636b2131afc00a6009f2afbf28 | p@chr9:118701819..118701835, + |
| 2.53e-18 | FFCP PHASE2:Hg19::chr7:150574212..150574225,-#_124df04dac7fbc8aed5cef3c98729133 | p@chr7:150574212..150574225, - |
| 2.53e-18 | FFCP PHASE1:Hg19::chr7:150574212..150574225,-#_124df04dac7fbc8aed5cef3c98729133 | p@chr7:150574212..150574225, - |
| 2.81e-18 | FFCP PHASE2:Hg19::chr1:246023808..246023820,-#_ca30f297998ba8fea8d1b53fa3d539cb | p@chr1:246023808..246023820, - |
| 2.81e-18 | FFCP PHASE1:Hg19::chr1:246023808..246023820,-#_ca30f297998ba8fea8d1b53fa3d539cb | p@chr1:246023808..246023820, - |
| 9.46e-18 | FFCP PHASE2:Hg19::chr10:62677334..62677342,-#_e34d2db64c280c117c1362feb2e34b6b | p@chr10:62677334..62677342, - |
| 9.46e-18 | FFCP PHASE1:Hg19::chr4:120546882..120546885,-#_e34d2db64c280c117c1362feb2e34b6b | p@chr4:120546882..120546885, - |
| 9.46e-18 | FFCP PHASE1:Hg19::chr10:62677334..62677342,-#_e34d2db64c280c117c1362feb2e34b6b | p@chr10:62677334..62677342, - |
| 9.46e-18 | FFCP PHASE2:Hg19::chr4:120546882..120546885,-#_e34d2db64c280c117c1362feb2e34b6b | p@chr4:120546882..120546885, - |
| 1.21e-17 | FFCP PHASE1:Hg19::chr11:19441234..19441247,+#_8c9c9a9d054d522cd20cee1c0a24164c | p@chr11:19441234..19441247, + |
| 1.21e-17 | FFCP PHASE2:Hg19::chr11:19441234..19441247,+#_8c9c9a9d054d522cd20cee1c0a24164c | p@chr11:19441234..19441247, + |
| 1.51e-17 | FFCP PHASE1:Hg19::chr15:80800274..80800278,-#_bd0d7145c1860fa54ebc351f56d52c5d | p@chr15:80800274..80800278, - |
| 1.51e-17 | FFCP PHASE2:Hg19::chr15:80800274..80800278,-#_bd0d7145c1860fa54ebc351f56d52c5d | p@chr15:80800274..80800278, - |
| 2.0e-17 | FFCP PHASE2:Hg19::chr1:31842256..31842273,+#_ba48ddf16c538d415b317ea0bbc37c31 | p@chr1:31842256..31842273, + |
| 2.0e-17 | FFCP PHASE1:Hg19::chr1:31842256..31842273,+#_ba48ddf16c538d415b317ea0bbc37c31 | p@chr1:31842256..31842273, + |
| 2.07e-17 | FFCP PHASE2:Hg19::chr18:77557948..77557968,+#_322eb77873d05e5435e33eb0db67ee30 | p@chr18:77557948..77557968, + |
| 2.07e-17 | FFCP PHASE1:Hg19::chr18:77557948..77557968,+#_322eb77873d05e5435e33eb0db67ee30 | p@chr18:77557948..77557968, + |
| 3.48e-17 | FFCP PHASE1:Hg19::chr4:1165106..1165131,-#_49faa5f487e06f70d92270508bca1e8c | p15@SPON2 |
| 3.48e-17 | FFCP PHASE2:Hg19::chr4:1165106..1165131,-#_49faa5f487e06f70d92270508bca1e8c | p15@SPON2 |
| 4.46e-17 | FFCP PHASE1:Hg19::chr10:101292731..101292741,+#_11765a9908b4780c7e558eaaf86c9fb6 | p2@NKX2-3 |
| 4.46e-17 | FFCP PHASE2:Hg19::chr10:101292731..101292741,+#_11765a9908b4780c7e558eaaf86c9fb6 | p2@NKX2-3 |
| 5.3e-17 | FFCP PHASE2:Hg19::chr7:136759451..136759469,+#_1f8009d29aa82728c4cdf25814abc86f | p@chr7:136759451..136759469, + |
| 5.3e-17 | FFCP PHASE1:Hg19::chr7:136759451..136759469,+#_1f8009d29aa82728c4cdf25814abc86f | p@chr7:136759451..136759469, + |
| 8.36e-17 | FFCP PHASE2:Hg19::chr1:155225028..155225037,-#_cc5ae60a70ee703b2758cd4bc3a13d59 | p7@FAM189B |
| 8.36e-17 | FFCP PHASE1:Hg19::chr1:155225028..155225037,-#_cc5ae60a70ee703b2758cd4bc3a13d59 | p7@FAM189B |
| 1.05e-16 | FFCP PHASE2:Hg19::chr8:120079478..120079499,+#_77aafacec9a7ead58af82e2c48ecbd6b | p1@COLEC10 |
| 1.05e-16 | FFCP PHASE1:Hg19::chr8:120079478..120079499,+#_77aafacec9a7ead58af82e2c48ecbd6b | p1@COLEC10 |
| 1.88e-16 | FFCP PHASE2:Hg19::chr4:151503507..151503518,+#_76bc5e987e4a512cb0a12511bfceabd5 | p6@MAB21L2 |
| 1.88e-16 | FFCP PHASE1:Hg19::chr4:151503507..151503518,+#_76bc5e987e4a512cb0a12511bfceabd5 | p6@MAB21L2 |
| 2.92e-16 | FFCP PHASE1:Hg19::chr10:101292684..101292706,+#_50430d40ce80b580d5d4c09af6e2c292 | p1@NKX2-3 |
| 2.92e-16 | FFCP PHASE2:Hg19::chr10:101292684..101292706,+#_50430d40ce80b580d5d4c09af6e2c292 | p1@NKX2-3 |
| 4.41e-16 | FFCP PHASE2:Hg19::chr1:21766691..21766715,+#_1840349985046e234fd80195aef4079f | p3@NBPF3 |
| 4.41e-16 | FFCP PHASE1:Hg19::chr1:21766691..21766715,+#_1840349985046e234fd80195aef4079f | p3@NBPF3 |
