UBERON:0000043: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 13: | Line 13: | ||
|located_in= | |located_in= | ||
|name=tendon | |name=tendon | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0002204 | |part_of=UBERON:0002204 | ||
Latest revision as of 17:04, 12 September 2014
| Name: | tendon | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Dense regular connective tissue that connects muscle to bone[VSAO]." [VSAO:0000073, Wikipedia:Tendon] | ||
| Xrefs: |
| ||
| Synonyms: |
"sinew" RELATED [Wikipedia:Tendon] "tendo" RELATED LATIN [Wikipedia:Tendon] | ||
| Comments: | AO notes: in FMA, tendon is an organ component that with parts dense-irregular-connective-tissue of tendon and dense-irregular-connective-tissue of tendon sheath; we follow VSAO in making it a subtype of the former. In VSAO tendons connect muscle to bone; in WP the def states integument (e.g. auricular muscles) - but JB confirms this is not actually tendon but aponeurosis | ||
| Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0007846(dense regular connective tissue) |
|---|---|
| part_of: | UBERON:0002204(musculoskeletal system) |
Children
| is a: | UBERON:0003701 (calcaneal tendon) |
|---|---|
| part of: | CL:0000388 (tendon cell) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10264-104D3
- 10292-104G4 (achilles tendon, donor2)
- 10320-105A5
- 11763-123H8 (tenocyte, donor1)
- 11765-123I1 (tenocyte, donor2)
- 11768-123I4 (tenocyte, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000043 (tendon), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 9.74e-88 | FFCP PHASE2:Hg19::chr1:203150041..203150049,-#_16b22c4c6c73a9658609b7a3cc84646f | p@chr1:203150041..203150049, - |
| 9.74e-88 | FFCP PHASE1:Hg19::chr1:203150041..203150049,-#_16b22c4c6c73a9658609b7a3cc84646f | p@chr1:203150041..203150049, - |
| 2.75e-74 | FFCP PHASE1:Hg19::chr5:79375755..79375801,+#_3bf3cb7a93a092bc728e214cd46a20b1 | p@chr5:79375755..79375801, + |
| 2.75e-74 | FFCP PHASE2:Hg19::chr5:79375755..79375801,+#_3bf3cb7a93a092bc728e214cd46a20b1 | p@chr5:79375755..79375801, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr4:4396380..4396381,-#_f750e5eab0830ce7239486fa83c37476 | p@chr4:4396380..4396381, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr7:43016260..43016261,+#_f750e5eab0830ce7239486fa83c37476 | p@chr7:43016260..43016261, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr11:27541356..27541360,+#_f750e5eab0830ce7239486fa83c37476 | p@chr11:27541356..27541360, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr4:4396380..4396381,-#_f750e5eab0830ce7239486fa83c37476 | p@chr4:4396380..4396381, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr11:27541356..27541360,+#_f750e5eab0830ce7239486fa83c37476 | p@chr11:27541356..27541360, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr7:43016260..43016261,+#_f750e5eab0830ce7239486fa83c37476 | p@chr7:43016260..43016261, + |
| 2.4e-66 | FFCP PHASE2:Hg19::chr1:203150031..203150040,-#_4ee19ba79e59985c650a7dfbd0a02bf6 | p@chr1:203150031..203150040, - |
| 2.4e-66 | FFCP PHASE1:Hg19::chr1:203150031..203150040,-#_4ee19ba79e59985c650a7dfbd0a02bf6 | p@chr1:203150031..203150040, - |
| 2.41e-66 | FFCP PHASE1:Hg19::chr8:120608233..120608244,-#_87b07409380ad817b31b25bca4cdfaac | p@chr8:120608233..120608244, - |
| 2.41e-66 | FFCP PHASE2:Hg19::chr8:120608233..120608244,-#_87b07409380ad817b31b25bca4cdfaac | p@chr8:120608233..120608244, - |
| 1.22e-59 | FFCP PHASE1:Hg19::chr7:80373118..80373135,-#_5816a2ebe0876621333efba0cdab214c | p21@SEMA3C |
| 1.22e-59 | FFCP PHASE2:Hg19::chr7:80373118..80373135,-#_5816a2ebe0876621333efba0cdab214c | p21@SEMA3C |
| 3.13e-54 | FFCP PHASE1:Hg19::chr8:57353995..57354004,-#_319139aa9219587bcd198d4e5c390ed0 | p@chr8:57353995..57354004, - |
| 3.13e-54 | FFCP PHASE2:Hg19::chr8:57353995..57354004,-#_319139aa9219587bcd198d4e5c390ed0 | p@chr8:57353995..57354004, - |
| 9.77e-45 | FFCP PHASE2:Hg19::chr6:159660765..159660776,+#_be2864601463d3890dd791a489689987 | p@chr6:159660765..159660776, + |
| 9.77e-45 | FFCP PHASE1:Hg19::chr6:159660765..159660776,+#_be2864601463d3890dd791a489689987 | p@chr6:159660765..159660776, + |
| 6.64e-41 | FFCP PHASE2:Hg19::chr1:56962127..56962135,-#_0d94b3cf0e1469fb95f010046ca80b11 | p@chr1:56962127..56962135, - |
| 6.64e-41 | FFCP PHASE1:Hg19::chr1:56962127..56962135,-#_0d94b3cf0e1469fb95f010046ca80b11 | p@chr1:56962127..56962135, - |
| 2.93e-40 | FFCP PHASE1:Hg19::chr4:26492048..26492059,-#_0507b0ec0e854eaef528a31e606f3b78 | p3@CCKAR |
| 2.93e-40 | FFCP PHASE2:Hg19::chr4:26492048..26492059,-#_0507b0ec0e854eaef528a31e606f3b78 | p3@CCKAR |
| 9.77e-40 | FFCP PHASE2:Hg19::chr8:57354119..57354137,+#_dd7bfbaf6cdd41b93577cce2efaf5612 | p@chr8:57354119..57354137, + |
| 9.77e-40 | FFCP PHASE1:Hg19::chr8:57354119..57354137,+#_dd7bfbaf6cdd41b93577cce2efaf5612 | p@chr8:57354119..57354137, + |
| 1.46e-39 | FFCP PHASE1:Hg19::chr19:18895742..18895757,-#_8c70fda5fc8656025d221f41f4fb5353 | p@chr19:18895742..18895757, - |
| 1.46e-39 | FFCP PHASE2:Hg19::chr19:18895742..18895757,-#_8c70fda5fc8656025d221f41f4fb5353 | p@chr19:18895742..18895757, - |
| 6.91e-39 | FFCP PHASE1:Hg19::chr7:15725581..15725587,-#_e89889d660f42bd01e7df95b2f05c48f | p13@MEOX2 |
| 6.91e-39 | FFCP PHASE2:Hg19::chr7:15725581..15725587,-#_e89889d660f42bd01e7df95b2f05c48f | p13@MEOX2 |
| 8.37e-39 | FFCP PHASE2:Hg19::chr1:203149809..203149816,-#_2b81e38930ee7aaef4048e8994c9716a | p@chr1:203149809..203149816, - |
| 8.37e-39 | FFCP PHASE1:Hg19::chr1:203149809..203149816,-#_2b81e38930ee7aaef4048e8994c9716a | p@chr1:203149809..203149816, - |
| 1.01e-38 | FFCP PHASE1:Hg19::chr1:203152872..203152879,-#_80fb77150358c8ee15754de601ba041e | p@chr1:203152872..203152879, - |
| 1.01e-38 | FFCP PHASE2:Hg19::chr1:203152872..203152879,-#_80fb77150358c8ee15754de601ba041e | p@chr1:203152872..203152879, - |
| 3.19e-38 | FFCP PHASE2:Hg19::chr18:61495529..61495546,+#_fed88615a90dd2f088a4e5b238e991d7 | p@chr18:61495529..61495546, + |
| 3.19e-38 | FFCP PHASE1:Hg19::chr18:61495529..61495546,+#_fed88615a90dd2f088a4e5b238e991d7 | p@chr18:61495529..61495546, + |
| 8.41e-38 | FFCP PHASE2:Hg19::chr8:110346720..110346722,-#_9c83f90156408743612b858b4e4097e5 | p5@NUDCD1 |
| 8.41e-38 | FFCP PHASE1:Hg19::chr8:110346720..110346722,-#_9c83f90156408743612b858b4e4097e5 | p5@NUDCD1 |
| 2.95e-37 | FFCP PHASE1:Hg19::chr10:28033776..28033788,+#_a3326c4b8a969ad09fbeae8d382a62f5 | p1@ENST00000419777 |
| 2.95e-37 | FFCP PHASE2:Hg19::chr10:28033776..28033788,+#_a3326c4b8a969ad09fbeae8d382a62f5 | p1@ENST00000419777 |
| 1.39e-34 | FFCP PHASE2:Hg19::chr1:203148394..203148401,-#_ef308ecd6e2916287b105c099cf5ef44 | p10@CHI3L1 |
| 1.39e-34 | FFCP PHASE1:Hg19::chr1:203148394..203148401,-#_ef308ecd6e2916287b105c099cf5ef44 | p10@CHI3L1 |
| 2.19e-34 | FFCP PHASE1:Hg19::chr12:91502776..91502785,-#_319824c01e95ce7618a9a71c01d3adc4 | p15@LUM |
| 2.19e-34 | FFCP PHASE1:Hg19::chr7:87906696..87906704,-#_319824c01e95ce7618a9a71c01d3adc4 | p@chr7:87906696..87906704, - |
| 2.19e-34 | FFCP PHASE2:Hg19::chr12:91502776..91502785,-#_319824c01e95ce7618a9a71c01d3adc4 | p15@LUM |
| 2.19e-34 | FFCP PHASE2:Hg19::chr7:87906696..87906704,-#_319824c01e95ce7618a9a71c01d3adc4 | p@chr7:87906696..87906704, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr1:203153416..203153419,-#_ffd50c68e3a0caff8722c56c367ad622 | p@chr1:203153416..203153419, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr1:203153416..203153419,-#_ffd50c68e3a0caff8722c56c367ad622 | p@chr1:203153416..203153419, - |
| 5.96e-34 | FFCP PHASE1:Hg19::chr10:127350469..127350475,-#_736d04ac07c2dcbb6247e146a8048342 | p@chr10:127350469..127350475, - |
| 5.96e-34 | FFCP PHASE2:Hg19::chr1:110471879..110471901,+#_736d04ac07c2dcbb6247e146a8048342 | p@chr1:110471879..110471901, + |
| 5.96e-34 | FFCP PHASE1:Hg19::chr1:110471879..110471901,+#_736d04ac07c2dcbb6247e146a8048342 | p@chr1:110471879..110471901, + |
| 5.96e-34 | FFCP PHASE2:Hg19::chr10:127350469..127350475,-#_736d04ac07c2dcbb6247e146a8048342 | p@chr10:127350469..127350475, - |
| 8.46e-34 | FFCP PHASE2:Hg19::chr1:56320708..56320728,-#_911570f7c69a3bf9a083cd641933b450 | p@chr1:56320708..56320728, - |
| 8.46e-34 | FFCP PHASE1:Hg19::chr1:56320708..56320728,-#_911570f7c69a3bf9a083cd641933b450 | p@chr1:56320708..56320728, - |
| 9.1e-34 | FFCP PHASE2:Hg19::chr8:57354463..57354473,+#_837eef7df5624f5933e186ecccae9a6e | p@chr8:57354463..57354473, + |
| 9.1e-34 | FFCP PHASE1:Hg19::chr8:57354463..57354473,+#_837eef7df5624f5933e186ecccae9a6e | p@chr8:57354463..57354473, + |
| 2.31e-33 | FFCP PHASE1:Hg19::chr18:43418712..43418734,+#_2563f96693fa3f02675c4160cd611647 | p7@SIGLEC15 |
| 2.31e-33 | FFCP PHASE2:Hg19::chr18:43418712..43418734,+#_2563f96693fa3f02675c4160cd611647 | p7@SIGLEC15 |
| 7.76e-32 | FFCP PHASE2:Hg19::chr19:18899448..18899459,-#_fc02ada22d0c4d54696b00662405de4b | p@chr19:18899448..18899459, - |
| 7.76e-32 | FFCP PHASE1:Hg19::chr19:18899448..18899459,-#_fc02ada22d0c4d54696b00662405de4b | p@chr19:18899448..18899459, - |
| 1.32e-31 | FFCP PHASE2:Hg19::chr3:100494130..100494141,-#_0a7567ab8097d5a01f89d31662c068fb | p@chr3:100494130..100494141, - |
| 1.32e-31 | FFCP PHASE1:Hg19::chr3:100494130..100494141,-#_0a7567ab8097d5a01f89d31662c068fb | p@chr3:100494130..100494141, - |
| 9.03e-31 | FFCP PHASE2:Hg19::chr19:18900031..18900054,+#_ee18da8cf9b1e54accaa639a4f9c0363 | p@chr19:18900031..18900054, + |
| 9.03e-31 | FFCP PHASE1:Hg19::chr19:18900031..18900054,+#_ee18da8cf9b1e54accaa639a4f9c0363 | p@chr19:18900031..18900054, + |
| 1.09e-30 | FFCP PHASE2:Hg19::chr1:161969956..161969963,-#_207b611b04c8f046f21810e828ec9aab | p@chr1:161969956..161969963, - |
| 1.09e-30 | FFCP PHASE1:Hg19::chr1:161969956..161969963,-#_207b611b04c8f046f21810e828ec9aab | p@chr1:161969956..161969963, - |
| 2.48e-30 | FFCP PHASE2:Hg19::chr19:18896512..18896527,-#_5a7dc5dd9de371b14178632cc296f035 | p@chr19:18896512..18896527, - |
| 2.48e-30 | FFCP PHASE1:Hg19::chr19:18896512..18896527,-#_5a7dc5dd9de371b14178632cc296f035 | p@chr19:18896512..18896527, - |
| 2.67e-30 | FFCP PHASE1:Hg19::chr5:79351765..79351792,+#_9f30a5fc3151643ca6822c88d509ce49 | p@chr5:79351765..79351792, + |
| 2.67e-30 | FFCP PHASE2:Hg19::chr5:79351765..79351792,+#_9f30a5fc3151643ca6822c88d509ce49 | p@chr5:79351765..79351792, + |
| 5.0e-30 | FFCP PHASE1:Hg19::chr20:48140767..48140776,-#_904332ac964d154527c2bd89a613bcaa | p@chr20:48140767..48140776, - |
| 5.0e-30 | FFCP PHASE2:Hg19::chr20:48140767..48140776,-#_904332ac964d154527c2bd89a613bcaa | p@chr20:48140767..48140776, - |
| 2.91e-29 | FFCP PHASE1:Hg19::chr19:18895812..18895830,-#_eb45e213cfdf331e06a1629ea590a0db | p@chr19:18895812..18895830, - |
| 2.91e-29 | FFCP PHASE2:Hg19::chr19:18895812..18895830,-#_eb45e213cfdf331e06a1629ea590a0db | p@chr19:18895812..18895830, - |
| 5.18e-29 | FFCP PHASE2:Hg19::chr15:81243109..81243120,+#_0e97b4a51c3ad5b78b02c14ef9cc6650 | p@chr15:81243109..81243120, + |
| 5.18e-29 | FFCP PHASE1:Hg19::chr15:81243109..81243120,+#_0e97b4a51c3ad5b78b02c14ef9cc6650 | p@chr15:81243109..81243120, + |
| 1.11e-28 | FFCP PHASE1:Hg19::chr19:18896642..18896656,-#_82b03a0db758942d1206555c22957b88 | p@chr19:18896642..18896656, - |
| 1.11e-28 | FFCP PHASE2:Hg19::chr19:18896642..18896656,-#_82b03a0db758942d1206555c22957b88 | p@chr19:18896642..18896656, - |
| 1.42e-28 | FFCP PHASE2:Hg19::chr1:56977818..56977827,-#_ebc63efa927d496147b8c3ece570bff9 | p@chr1:56977818..56977827, - |
| 1.42e-28 | FFCP PHASE1:Hg19::chr1:56977818..56977827,-#_ebc63efa927d496147b8c3ece570bff9 | p@chr1:56977818..56977827, - |
| 2.06e-28 | FFCP PHASE2:Hg19::chr17:38613300..38613311,-#_54170690f2959365375e211415324303 | p@chr17:38613300..38613311, - |
| 2.06e-28 | FFCP PHASE1:Hg19::chr17:38613300..38613311,-#_54170690f2959365375e211415324303 | p@chr17:38613300..38613311, - |
| 3.59e-28 | FFCP PHASE2:Hg19::chr1:203148495..203148505,-#_b2a0790885a6a8ccac93f93cd837e1a1 | p13@CHI3L1 |
| 3.59e-28 | FFCP PHASE2:Hg19::chr3:69154031..69154043,+#_b2a0790885a6a8ccac93f93cd837e1a1 | p@chr3:69154031..69154043, + |
| 3.59e-28 | FFCP PHASE1:Hg19::chr1:203148495..203148505,-#_b2a0790885a6a8ccac93f93cd837e1a1 | p13@CHI3L1 |
| 3.59e-28 | FFCP PHASE1:Hg19::chr3:69154031..69154043,+#_b2a0790885a6a8ccac93f93cd837e1a1 | p@chr3:69154031..69154043, + |
| 6.24e-28 | FFCP PHASE1:Hg19::chr8:57354275..57354292,-#_3f0dcba66afd581190b8793e7f26913f | p@chr8:57354275..57354292, - |
| 6.24e-28 | FFCP PHASE2:Hg19::chr8:57354275..57354292,-#_3f0dcba66afd581190b8793e7f26913f | p@chr8:57354275..57354292, - |
| 9.35e-28 | FFCP PHASE2:Hg19::chr4:26491909..26491918,-#_728d17655ad62a8e7933d007ea1f83c3 | p2@CCKAR |
| 9.35e-28 | FFCP PHASE1:Hg19::chr4:26491909..26491918,-#_728d17655ad62a8e7933d007ea1f83c3 | p2@CCKAR |
| 1.19e-27 | FFCP PHASE1:Hg19::chr3:86992689..86992700,-#_14801ba787fd788d8c897479460f65df | p@chr3:86992689..86992700, - |
| 1.19e-27 | FFCP PHASE2:Hg19::chr3:86992689..86992700,-#_14801ba787fd788d8c897479460f65df | p@chr3:86992689..86992700, - |
| 1.39e-27 | FFCP PHASE1:Hg19::chr21:39705323..39705334,-#_792f14fce1cd18af128076f7a137b5b6 | p2@ENST00000436845 |
| 1.39e-27 | FFCP PHASE2:Hg19::chr21:39705323..39705334,-#_792f14fce1cd18af128076f7a137b5b6 | p2@ENST00000436845 |
| 2.46e-27 | FFCP PHASE2:Hg19::chr19:18895892..18895911,-#_7c66d1e2fa9081adc69ec8d9fb9b8dd2 | p@chr19:18895892..18895911, - |
| 2.46e-27 | FFCP PHASE1:Hg19::chr19:18895892..18895911,-#_7c66d1e2fa9081adc69ec8d9fb9b8dd2 | p@chr19:18895892..18895911, - |
| 3.11e-27 | FFCP PHASE1:Hg19::chr3:29966392..29966406,+#_0e4c0b480cf3f7b95a1d79016c927225 | p22@RBMS3 |
| 3.11e-27 | FFCP PHASE2:Hg19::chr3:29966392..29966406,+#_0e4c0b480cf3f7b95a1d79016c927225 | p22@RBMS3 |
| 3.89e-27 | FFCP PHASE2:Hg19::chr1:203151934..203151947,-#_0ba6d9affa9949cf5665ba2ce94a173e | p7@CHI3L1 |
| 3.89e-27 | FFCP PHASE1:Hg19::chr1:203151934..203151947,-#_0ba6d9affa9949cf5665ba2ce94a173e | p7@CHI3L1 |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Dense regular connective tissue that connects muscle to bone.[VSAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
