Personal tools

UBERON:0001281: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
Line 13: Line 13:
|located_in=
|located_in=
|name=hepatic sinusoid
|name=hepatic sinusoid
|namespace=
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=UBERON:0002107;;UBERON:0004647;;UBERON:0006877
|part_of=UBERON:0002107;;UBERON:0004647;;UBERON:0006877

Latest revision as of 17:17, 12 September 2014

Name:hepatic sinusoid
Namespace:FANTOM
Definition:"Wide thin-walled blood vessels in the liver. In mammals they have neither veinous or arterial markers." [Wikipedia:Hepatic_sinusoid, ZFIN:curator]
Xrefs:
links:

EHDAA2:0000999
EHDAA:2199
EHDAA:3997
EHDAA:4003
EHDAA:6992
EHDAA:8084
EMAPA:17365
FMA:17543
MA:0000367
ncithesaurus:Hepatic_Sinusoid
SCTID:67435004
TAO:0005091
VHOG:0000708

ZFA:0005091
Synonyms: "hepatic sinusoids" RELATED []
"liver sinusoid" EXACT []
"liver sinusoidal blood vessel" EXACT [OBOL:automatic]
"sinusoid of liver" EXACT [OBOL:automatic]
"sinusoidal blood vessel of liver" EXACT [OBOL:automatic]
"vas capillare sinusoideum" EXACT []
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:0003275
UBERON:FMA_17543-MA_0000367-ZFA_0005091
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0003909(sinusoid),UBERON:0005911(endo-epithelium),UBERON:0015796(liver blood vessel)
part_of:UBERON:0002107(liver),UBERON:0004647(liver lobule),UBERON:0006877(vasculature of liver)



Children

is a:FF:13595-146E4 (liver sinusoidal endothelial cells, sham operation, biol_rep1),FF:13596-146E5 (liver sinusoidal endothelial cells, sham operation, biol_rep2),FF:13597-146E6 (liver sinusoidal endothelial cells, sham operation, biol_rep3),FF:13598-146E7 (liver sinusoidal endothelial cells, partial hepatectomy, 02hr, biol_rep1),FF:13599-146E8 (liver sinusoidal endothelial cells, partial hepatectomy, 02hr, biol_rep2),FF:13600-146E9 (liver sinusoidal endothelial cells, partial hepatectomy, 02hr, biol_rep3),FF:13601-146F1 (liver sinusoidal endothelial cells, partial hepatectomy, 30hr, biol_rep1),FF:13602-146F2 (liver sinusoidal endothelial cells, partial hepatectomy, 30hr, biol_rep2),FF:13603-146F3 (liver sinusoidal endothelial cells, partial hepatectomy, 30hr, biol_rep3),FF:13604-146F4 (liver sinusoidal endothelial cells, partial hepatectomy, 48hr, biol_rep1),FF:13605-146F5 (liver sinusoidal endothelial cells, partial hepatectomy, 48hr, biol_rep2),FF:13606-146F6 (liver sinusoidal endothelial cells, partial hepatectomy, 48hr, biol_rep3),FF:13607-146F7 (liver sinusoidal endothelial cells, partial hepatectomy, week01, biol_rep1),FF:13608-146F8 (liver sinusoidal endothelial cells, partial hepatectomy, week01, biol_rep2),FF:13609-146F9 (liver sinusoidal endothelial cells, partial hepatectomy, week01, biol_rep3)
derives from:FF:0000076 (hepatic sinusoidal endothelial cell sample)
part of:FF:0000076 (hepatic sinusoidal endothelial cell sample),CL:1000398 (endothelial cell of hepatic sinusoid)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

  • 11521-119H9 (Hepatic Sinusoidal Endothelial Cells, donor1)
  • 11601-120H8 (Hepatic Sinusoidal Endothelial Cells, donor2)
  • 11682-122H8 (Hepatic Sinusoidal Endothelial Cells, donor3)
  • 11830-124G3 (Mouse hepatic Sinusoidal Endothelial Cells, donor1)
  • 11831-124G4
  • 11832-124G5
  • 13595-146E4 (liver sinusoidal endothelial cells, sham operation, biol_rep1)
  • 13596-146E5 (liver sinusoidal endothelial cells, sham operation, biol_rep2)
  • 13597-146E6 (liver sinusoidal endothelial cells, sham operation, biol_rep3)
  • 13598-146E7 (liver sinusoidal endothelial cells, partial hepatectomy, 02hr, biol_rep1)

... further results Mouse (Mus musculus)

  • 11521-119H9 (Hepatic Sinusoidal Endothelial Cells, donor1)
  • 11601-120H8 (Hepatic Sinusoidal Endothelial Cells, donor2)
  • 11682-122H8 (Hepatic Sinusoidal Endothelial Cells, donor3)
  • 11830-124G3 (Mouse hepatic Sinusoidal Endothelial Cells, donor1)
  • 11831-124G4
  • 11832-124G5
  • 13595-146E4 (liver sinusoidal endothelial cells, sham operation, biol_rep1)
  • 13596-146E5 (liver sinusoidal endothelial cells, sham operation, biol_rep2)
  • 13597-146E6 (liver sinusoidal endothelial cells, sham operation, biol_rep3)
  • 13598-146E7 (liver sinusoidal endothelial cells, partial hepatectomy, 02hr, biol_rep1)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001281 (hepatic sinusoid), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
8.99e-131FFCP PHASE2:Hg19::chr7:158330204..158330217,+#_7f7f0c30fadbc3fe2909c5e93ffd97a2p2@ENST00000448698
8.99e-131FFCP PHASE1:Hg19::chr7:158330204..158330217,+#_7f7f0c30fadbc3fe2909c5e93ffd97a2p2@ENST00000448698
3.07e-86FFCP PHASE1:Mm9::chr12:85288471..85288502,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr12:85288471..85288502, +
3.07e-86FFCP PHASE1:Mm9::chr5:32912678..32912687,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr5:32912678..32912687, +
3.07e-86FFCP PHASE2:Mm9::chr4:141645056..141645068,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr4:141645056..141645068, +
3.07e-86FFCP PHASE1:Mm9::chr8:25530071..25530072,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr8:25530071..25530072, +
3.07e-86FFCP PHASE1:Mm9::chr4:100890388..100890423,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr4:100890388..100890423, +
3.07e-86FFCP PHASE2:Mm9::chr12:86691530..86691535,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr12:86691530..86691535, -
3.07e-86FFCP PHASE1:Mm9::chr9:42915185..42915192,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr9:42915185..42915192, -
3.07e-86FFCP PHASE1:Mm9::chr6:91441074..91441080,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr6:91441074..91441080, -
3.07e-86FFCP PHASE1:Mm9::chr17:35094068..35094092,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr17:35094068..35094092, -
3.07e-86FFCP PHASE2:Mm9::chr17:35093377..35093381,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr17:35093377..35093381, +
3.07e-86FFCP PHASE2:Mm9::chr2:129407463..129407468,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr2:129407463..129407468, -
3.07e-86FFCP PHASE1:Mm9::chr19:29573929..29573932,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr19:29573929..29573932, +
3.07e-86FFCP PHASE1:Mm9::chr4:141645056..141645068,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr4:141645056..141645068, +
3.07e-86FFCP PHASE2:Mm9::chr3:90270007..90270012,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr3:90270007..90270012, +
3.07e-86FFCP PHASE1:Mm9::chr1:132405466..132405470,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr1:132405466..132405470, +
3.07e-86FFCP PHASE1:Mm9::chr14:101778294..101778296,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr14:101778294..101778296, +
3.07e-86FFCP PHASE1:Mm9::chr12:87046930..87046933,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr12:87046930..87046933, +
3.07e-86FFCP PHASE1:Mm9::chr5:76329688..76329692,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr5:76329688..76329692, -
3.07e-86FFCP PHASE1:Mm9::chr13:113554186..113554192,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr13:113554186..113554192, +
3.07e-86FFCP PHASE1:Mm9::chr2:169549462..169549477,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr2:169549462..169549477, +
3.07e-86FFCP PHASE2:Mm9::chr1:186559285..186559288,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr1:186559285..186559288, +
3.07e-86FFCP PHASE2:Mm9::chr10:85585949..85585969,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr10:85585949..85585969, -
3.07e-86FFCP PHASE1:Mm9::chr8:114250006..114250039,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr8:114250006..114250039, -
3.07e-86FFCP PHASE1:Mm9::chr4:57687477..57687488,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr4:57687477..57687488, +
3.07e-86FFCP PHASE1:Mm9::chr15:97402708..97402712,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr15:97402708..97402712, +
3.07e-86FFCP PHASE1:Mm9::chr1:163794592..163794593,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr1:163794592..163794593, +
3.07e-86FFCP PHASE1:Mm9::chr18:65159026..65159034,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr18:65159026..65159034, -
3.07e-86FFCP PHASE1:Mm9::chr7:117101788..117101793,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr7:117101788..117101793, +
3.07e-86FFCP PHASE1:Mm9::chr1:186559285..186559288,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr1:186559285..186559288, +
3.07e-86FFCP PHASE1:Mm9::chr11:109223779..109223789,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr11:109223779..109223789, -
3.07e-86FFCP PHASE1:Mm9::chr4:43407825..43407830,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr4:43407825..43407830, +
3.07e-86FFCP PHASE2:Mm9::chr16:85801525..85801529,-#_6fce5d17c2d4fcdd0dfb645df56d5240p6@Adamts1
3.07e-86FFCP PHASE2:Mm9::chr9:42915220..42915225,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr9:42915220..42915225, -
3.07e-86FFCP PHASE1:Mm9::chr1:138241693..138241697,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr1:138241693..138241697, +
3.07e-86FFCP PHASE2:Mm9::chr1:66883923..66883955,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr1:66883923..66883955, -
3.07e-86FFCP PHASE1:Mm9::chr10:93895817..93895819,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr10:93895817..93895819, -
3.07e-86FFCP PHASE2:Mm9::chr13:100000226..100000230,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr13:100000226..100000230, +
3.07e-86FFCP PHASE1:Mm9::chr9:45920408..45920437,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr9:45920408..45920437, -
3.07e-86FFCP PHASE1:Mm9::chr2:133323630..133323631,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr2:133323630..133323631, +
3.07e-86FFCP PHASE1:Mm9::chr17:35106749..35106752,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr17:35106749..35106752, -
3.07e-86FFCP PHASE2:Mm9::chr18:35881716..35881727,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr18:35881716..35881727, -
3.07e-86FFCP PHASE1:Mm9::chr6:34549876..34549892,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr6:34549876..34549892, -
3.07e-86FFCP PHASE2:Mm9::chr2:84756280..84756286,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr2:84756280..84756286, +
3.07e-86FFCP PHASE1:Mm9::chr18:38831400..38831402,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr18:38831400..38831402, -
3.07e-86FFCP PHASE1:Mm9::chr10:85587155..85587188,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr10:85587155..85587188, +
3.07e-86FFCP PHASE2:Mm9::chr17:12388232..12388237,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr17:12388232..12388237, +
3.07e-86FFCP PHASE1:Mm9::chr17:34798597..34798606,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr17:34798597..34798606, +
3.07e-86FFCP PHASE1:Mm9::chr12:25364645..25364655,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr12:25364645..25364655, +
3.07e-86FFCP PHASE1:Mm9::chr11:68437375..68437378,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr11:68437375..68437378, +
3.07e-86FFCP PHASE2:Mm9::chr15:88669906..88669914,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr15:88669906..88669914, +
3.07e-86FFCP PHASE2:Mm9::chr15:59435855..59435878,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr15:59435855..59435878, -
3.07e-86FFCP PHASE2:Mm9::chr9:45920408..45920437,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr9:45920408..45920437, -
3.07e-86FFCP PHASE1:Mm9::chr11:117829935..117829959,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr11:117829935..117829959, -
3.07e-86FFCP PHASE1:Mm9::chr13:113542610..113542614,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr13:113542610..113542614, +
3.07e-86FFCP PHASE1:Mm9::chr8:89310639..89310641,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr8:89310639..89310641, -
3.07e-86FFCP PHASE1:Mm9::chr8:111108947..111108951,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr8:111108947..111108951, +
3.07e-86FFCP PHASE2:Mm9::chr11:109223779..109223789,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr11:109223779..109223789, -
3.07e-86FFCP PHASE2:Mm9::chr6:34549876..34549892,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr6:34549876..34549892, -
3.07e-86FFCP PHASE2:Mm9::chr11:68437375..68437378,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr11:68437375..68437378, +
3.07e-86FFCP PHASE2:Mm9::chr17:48822294..48822295,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr17:48822294..48822295, -
3.07e-86FFCP PHASE2:Mm9::chr17:28107053..28107062,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr17:28107053..28107062, -
3.07e-86FFCP PHASE1:Mm9::chr13:5840965..5840966,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr13:5840965..5840966, +
3.07e-86FFCP PHASE2:Mm9::chr2:133323630..133323631,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr2:133323630..133323631, +
3.07e-86FFCP PHASE1:Mm9::chr5:33088768..33088773,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr5:33088768..33088773, +
3.07e-86FFCP PHASE1:Mm9::chr18:44793802..44793835,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr18:44793802..44793835, +
3.07e-86FFCP PHASE2:Mm9::chr8:11183699..11183703,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr8:11183699..11183703, -
3.07e-86FFCP PHASE2:Mm9::chr12:86691575..86691580,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr12:86691575..86691580, -
3.07e-86FFCP PHASE2:Mm9::chr11:88890706..88890745,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr11:88890706..88890745, +
3.07e-86FFCP PHASE1:Mm9::chr9:42915220..42915225,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr9:42915220..42915225, -
3.07e-86FFCP PHASE1:Mm9::chr6:92938260..92938264,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr6:92938260..92938264, -
3.07e-86FFCP PHASE2:Mm9::chrX:166418658..166418683,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chrX:166418658..166418683, +
3.07e-86FFCP PHASE2:Mm9::chr18:39513150..39513152,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr18:39513150..39513152, +
3.07e-86FFCP PHASE2:Mm9::chr15:32178407..32178408,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr15:32178407..32178408, -
3.07e-86FFCP PHASE1:Mm9::chr9:62199266..62199267,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr9:62199266..62199267, +
3.07e-86FFCP PHASE2:Mm9::chr6:48398664..48398684,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr6:48398664..48398684, -
3.07e-86FFCP PHASE1:Mm9::chr11:118287827..118287833,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr11:118287827..118287833, -
3.07e-86FFCP PHASE1:Mm9::chr4:86335502..86335509,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr4:86335502..86335509, +
3.07e-86FFCP PHASE1:Mm9::chr10:8471698..8471701,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr10:8471698..8471701, +
3.07e-86FFCP PHASE2:Mm9::chr4:43407825..43407830,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr4:43407825..43407830, +
3.07e-86FFCP PHASE1:Mm9::chr2:84756280..84756286,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr2:84756280..84756286, +
3.07e-86FFCP PHASE2:Mm9::chr8:3311867..3311873,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr8:3311867..3311873, +
3.07e-86FFCP PHASE1:Mm9::chr1:173044327..173044331,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr1:173044327..173044331, +
3.07e-86FFCP PHASE1:Mm9::chr14:8928284..8928331,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr14:8928284..8928331, +
3.07e-86FFCP PHASE2:Mm9::chr18:47491114..47491123,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr18:47491114..47491123, +
3.07e-86FFCP PHASE2:Mm9::chr18:4336287..4336296,-#_6fce5d17c2d4fcdd0dfb645df56d5240p8@Map3k8
3.07e-86FFCP PHASE1:Mm9::chr15:32178407..32178408,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr15:32178407..32178408, -
3.07e-86FFCP PHASE1:Mm9::chr12:86691503..86691504,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr12:86691503..86691504, -
3.07e-86FFCP PHASE2:Mm9::chr15:82207617..82207621,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr15:82207617..82207621, +
3.07e-86FFCP PHASE1:Mm9::chr10:93942324..93942342,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr10:93942324..93942342, -
3.07e-86FFCP PHASE2:Mm9::chr17:35096519..35096524,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr17:35096519..35096524, +
3.07e-86FFCP PHASE2:Mm9::chr8:86713876..86713879,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr8:86713876..86713879, +
3.07e-86FFCP PHASE1:Mm9::chr17:24807620..24807650,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr17:24807620..24807650, -
3.07e-86FFCP PHASE1:Mm9::chr15:82193340..82193343,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr15:82193340..82193343, +
3.07e-86FFCP PHASE1:Mm9::chr18:39297570..39297573,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr18:39297570..39297573, -
3.07e-86FFCP PHASE1:Mm9::chr14:15179132..15179141,+#_6fce5d17c2d4fcdd0dfb645df56d5240p8@Il3ra
3.07e-86FFCP PHASE2:Mm9::chr8:111108947..111108951,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr8:111108947..111108951, +
3.07e-86FFCP PHASE1:Mm9::chr2:11935531..11935538,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr2:11935531..11935538, -
3.07e-86FFCP PHASE1:Mm9::chr17:35093377..35093381,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr17:35093377..35093381, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0001281&oldid=3277225"