UBERON:0005389: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 13: | Line 13: | ||
|located_in= | |located_in= | ||
|name=transparent eye structure | |name=transparent eye structure | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0000970 | |part_of=UBERON:0000970 | ||
Latest revision as of 17:53, 12 September 2014
| Name: | transparent eye structure |
|---|---|
| Namespace: | FANTOM |
| Synonyms: | "lens" NARROW [] |
| Comments: | transparent structure that is part of a visual sense organ, the function of which is to direct or focus light onto a photoreceptor array |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000064(organ part) |
|---|---|
| part_of: | UBERON:0000970(eye) |
Children
| is a: | UBERON:0000965 (lens of camera-type eye) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10647-109A8 (lens epithelial cell line:SRA 01/04)
- 11529-119I8 (Lens Epithelial Cells, donor1)
- 11609-120I7 (Lens Epithelial Cells, donor2)
- 11690-122I7 (Lens Epithelial Cells, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005389 (transparent eye structure), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.41e-88 | FFCP PHASE2:Hg19::chr22:25595823..25595826,+#_009498017eb9e7584adc36094588a63d | p1@CRYBB3 |
| 1.41e-88 | FFCP PHASE1:Hg19::chr22:25595823..25595826,+#_009498017eb9e7584adc36094588a63d | p1@CRYBB3 |
| 3.32e-74 | FFCP PHASE1:Hg19::chr22:25615600..25615611,+#_dc209207ee41e098c5a744d5bd1c5b29 | p1@CRYBB2 |
| 3.32e-74 | FFCP PHASE2:Hg19::chr22:25615600..25615611,+#_dc209207ee41e098c5a744d5bd1c5b29 | p1@CRYBB2 |
| 5.48e-74 | FFCP PHASE1:Hg19::chr19:51891222..51891233,-#_17d81f0564e13d7cbf92bacc4ce9883d | p1@LIM2 |
| 5.48e-74 | FFCP PHASE2:Hg19::chr19:51891222..51891233,-#_17d81f0564e13d7cbf92bacc4ce9883d | p1@LIM2 |
| 3.8e-56 | FFCP PHASE2:Hg19::chr22:27017921..27017928,+#_0cde5419ef31fa8b1f27b26d3b1703c0 | p1@CRYBA4 |
| 3.8e-56 | FFCP PHASE1:Hg19::chr22:27017921..27017928,+#_0cde5419ef31fa8b1f27b26d3b1703c0 | p1@CRYBA4 |
| 3.1e-50 | FFCP PHASE2:Hg19::chr13:104778247..104778293,+#_fac8ab668c965df8ff47b805fbdea2d2 | p@chr13:104778247..104778293, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr20:61204240..61204241,+#_fac8ab668c965df8ff47b805fbdea2d2 | p@chr20:61204240..61204241, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr20:61204240..61204241,+#_fac8ab668c965df8ff47b805fbdea2d2 | p@chr20:61204240..61204241, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr13:104778247..104778293,+#_fac8ab668c965df8ff47b805fbdea2d2 | p@chr13:104778247..104778293, + |
| 5.14e-50 | FFCP PHASE1:Hg19::chr14:37642016..37642022,-#_6ac540d941590918f0bacca88a090a10 | p7@SLC25A21 |
| 5.14e-50 | FFCP PHASE2:Hg19::chr14:37642016..37642022,-#_6ac540d941590918f0bacca88a090a10 | p7@SLC25A21 |
| 5.14e-50 | FFCP PHASE2:Hg19::chr21:44592820..44592840,-#_6ac540d941590918f0bacca88a090a10 | p2@CU686889 |
| 5.14e-50 | FFCP PHASE1:Hg19::chr21:44592820..44592840,-#_6ac540d941590918f0bacca88a090a10 | p2@CU686889 |
| 6.6e-50 | FFCP PHASE2:Hg19::chr21:44589339..44589372,-#_654233e55c20f2a7eb218844179c097c | p@chr21:44589339..44589372, - |
| 6.6e-50 | FFCP PHASE1:Hg19::chr21:44592842..44592867,-#_654233e55c20f2a7eb218844179c097c | p1@CU686889 |
| 6.6e-50 | FFCP PHASE1:Hg19::chr21:44589339..44589372,-#_654233e55c20f2a7eb218844179c097c | p@chr21:44589339..44589372, - |
| 6.6e-50 | FFCP PHASE2:Hg19::chr21:44592842..44592867,-#_654233e55c20f2a7eb218844179c097c | p1@CU686889 |
| 6.6e-50 | FFCP PHASE1:Hg19::chr12:132475501..132475504,+#_654233e55c20f2a7eb218844179c097c | p@chr12:132475501..132475504, + |
| 6.6e-50 | FFCP PHASE2:Hg19::chr12:132475501..132475504,+#_654233e55c20f2a7eb218844179c097c | p@chr12:132475501..132475504, + |
| 6.27e-44 | FFCP PHASE2:Hg19::chr11:31827535..31827565,-#_3020ef30965e700807ac94f9a73a194b | p11@PAX6 |
| 6.27e-44 | FFCP PHASE1:Hg19::chr11:31827535..31827565,-#_3020ef30965e700807ac94f9a73a194b | p11@PAX6 |
| 1.92e-41 | FFCP PHASE1:Hg19::chr3:186262166..186262170,-#_8aa1f6d305e294f707f7959f5dda380d | p1@CRYGS |
| 1.92e-41 | FFCP PHASE2:Hg19::chr3:186262166..186262170,-#_8aa1f6d305e294f707f7959f5dda380d | p1@CRYGS |
| 4.94e-40 | FFCP PHASE2:Hg19::chr5:112173525..112173532,+#_b629a5d0cff80ba40cf8443bb611be93 | p@chr5:112173525..112173532, + |
| 4.94e-40 | FFCP PHASE1:Hg19::chr5:112173525..112173532,+#_b629a5d0cff80ba40cf8443bb611be93 | p@chr5:112173525..112173532, + |
| 1.62e-37 | FFCP PHASE2:Hg19::chr1:29586692..29586705,+#_d3e601c784abd4045b54cebdb5b3aead | p7@PTPRU |
| 1.62e-37 | FFCP PHASE1:Hg19::chr1:29586692..29586705,+#_d3e601c784abd4045b54cebdb5b3aead | p7@PTPRU |
| 2.1e-35 | FFCP PHASE1:Hg19::chr14:60975644..60975673,+#_12f916bd4c3791075d80111819ac5599 | p3@SIX6 |
| 2.1e-35 | FFCP PHASE2:Hg19::chr14:60975644..60975673,+#_12f916bd4c3791075d80111819ac5599 | p3@SIX6 |
| 6.73e-35 | FFCP PHASE1:Hg19::chr14:60975871..60975880,+#_15238415c7addab4d7943f0902f6fa0b | p4@SIX6 |
| 6.73e-35 | FFCP PHASE2:Hg19::chr14:60975871..60975880,+#_15238415c7addab4d7943f0902f6fa0b | p4@SIX6 |
| 5.06e-34 | FFCP PHASE2:Hg19::chr11:31667372..31667383,-#_71621891bcaf7699352a98515ccaa543 | p@chr11:31667372..31667383, - |
| 5.06e-34 | FFCP PHASE1:Hg19::chr11:31667372..31667383,-#_71621891bcaf7699352a98515ccaa543 | p@chr11:31667372..31667383, - |
| 8.36e-34 | FFCP PHASE2:Hg19::chr19:1470631..1470648,-#_c5dc255406f7b4a1aa8a697fce2d96f8 | p@chr19:1470631..1470648, - |
| 8.36e-34 | FFCP PHASE1:Hg19::chr19:1470631..1470648,-#_c5dc255406f7b4a1aa8a697fce2d96f8 | p@chr19:1470631..1470648, - |
| 5.55e-33 | FFCP PHASE1:Hg19::chr21:44589135..44589151,+#_ff4c9a5c6637de08eee37cc3b8040155 | p1@CRYAA |
| 5.55e-33 | FFCP PHASE2:Hg19::chr21:44589135..44589151,+#_ff4c9a5c6637de08eee37cc3b8040155 | p1@CRYAA |
| 9.55e-33 | FFCP PHASE1:Hg19::chr17:27573875..27573878,+#_90e8e26c1811fed69b76b5e1ac47c7e0 | p1@CRYBA1 |
| 9.55e-33 | FFCP PHASE2:Hg19::chr17:27573875..27573878,+#_90e8e26c1811fed69b76b5e1ac47c7e0 | p1@CRYBA1 |
| 2.74e-29 | FFCP PHASE2:Hg19::chr2:45168589..45168601,-#_41b061f04fdf0efc64ded81d1e08121e | p2@ENST00000456467 |
| 2.74e-29 | FFCP PHASE1:Hg19::chr2:45168589..45168601,-#_41b061f04fdf0efc64ded81d1e08121e | p2@ENST00000456467 |
| 3.65e-29 | FFCP PHASE2:Hg19::chr7:107883678..107883689,-#_3a3d02e83746b3cf273e67e417020944 | p13@NRCAM |
| 3.65e-29 | FFCP PHASE1:Hg19::chr7:107883678..107883689,-#_3a3d02e83746b3cf273e67e417020944 | p13@NRCAM |
| 7.46e-29 | FFCP PHASE1:Hg19::chr13:114202163..114202178,+#_ffc5d084f70a4d7d71b9477288a325fe | p@chr13:114202163..114202178, + |
| 7.46e-29 | FFCP PHASE2:Hg19::chr13:114202163..114202178,+#_ffc5d084f70a4d7d71b9477288a325fe | p@chr13:114202163..114202178, + |
| 1.36e-28 | FFCP PHASE1:Hg19::chr3:173116225..173116242,+#_af5ee095dd1839916ec427a25e3467b5 | p10@NLGN1 |
| 1.36e-28 | FFCP PHASE2:Hg19::chr3:173116225..173116242,+#_af5ee095dd1839916ec427a25e3467b5 | p10@NLGN1 |
| 2.64e-27 | FFCP PHASE2:Hg19::chr2:45169233..45169244,+#_2c9a9b3d96a93e82667d27b650d70f15 | p10@SIX3 |
| 2.64e-27 | FFCP PHASE1:Hg19::chr2:45169233..45169244,+#_2c9a9b3d96a93e82667d27b650d70f15 | p10@SIX3 |
| 8.39e-27 | FFCP PHASE1:Hg19::chr14:60975858..60975869,+#_1b24db916ababe504ed826cd56db96cc | p2@SIX6 |
| 8.39e-27 | FFCP PHASE2:Hg19::chr14:60975858..60975869,+#_1b24db916ababe504ed826cd56db96cc | p2@SIX6 |
| 5.56e-26 | FFCP PHASE2:Hg19::chr1:147374915..147374932,+#_3ef4a025590bfb8c0fdd108220557e10 | p1@GJA8 |
| 5.56e-26 | FFCP PHASE1:Hg19::chr3:150690809..150690822,-#_3ef4a025590bfb8c0fdd108220557e10 | p3@CLRN1 |
| 5.56e-26 | FFCP PHASE2:Hg19::chr20:35861148..35861151,+#_3ef4a025590bfb8c0fdd108220557e10 | p@chr20:35861148..35861151, + |
| 5.56e-26 | FFCP PHASE1:Hg19::chrX:43587410..43587413,+#_3ef4a025590bfb8c0fdd108220557e10 | p@chrX:43587410..43587413, + |
| 5.56e-26 | FFCP PHASE2:Hg19::chr9:75848662..75848671,-#_3ef4a025590bfb8c0fdd108220557e10 | p@chr9:75848662..75848671, - |
| 5.56e-26 | FFCP PHASE1:Hg19::chr1:147374915..147374932,+#_3ef4a025590bfb8c0fdd108220557e10 | p1@GJA8 |
| 5.56e-26 | FFCP PHASE2:Hg19::chr19:40920692..40920700,-#_3ef4a025590bfb8c0fdd108220557e10 | p@chr19:40920692..40920700, - |
| 5.56e-26 | FFCP PHASE1:Hg19::chr20:35861148..35861151,+#_3ef4a025590bfb8c0fdd108220557e10 | p@chr20:35861148..35861151, + |
| 5.56e-26 | FFCP PHASE2:Hg19::chr3:150690809..150690822,-#_3ef4a025590bfb8c0fdd108220557e10 | p3@CLRN1 |
| 5.56e-26 | FFCP PHASE1:Hg19::chr9:75848662..75848671,-#_3ef4a025590bfb8c0fdd108220557e10 | p@chr9:75848662..75848671, - |
| 5.56e-26 | FFCP PHASE2:Hg19::chrX:43587410..43587413,+#_3ef4a025590bfb8c0fdd108220557e10 | p@chrX:43587410..43587413, + |
| 5.56e-26 | FFCP PHASE1:Hg19::chr19:40920692..40920700,-#_3ef4a025590bfb8c0fdd108220557e10 | p@chr19:40920692..40920700, - |
| 7.14e-26 | FFCP PHASE1:Hg19::chr8:94870047..94870056,+#_741cf461150fd901a575cdcd3da16f8f | p30@PDP1 |
| 7.14e-26 | FFCP PHASE1:Hg19::chr13:72440726..72440736,-#_741cf461150fd901a575cdcd3da16f8f | p19@DACH1 |
| 7.14e-26 | FFCP PHASE2:Hg19::chr9:100057272..100057276,+#_741cf461150fd901a575cdcd3da16f8f | p@chr9:100057272..100057276, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr19:17137781..17137792,-#_741cf461150fd901a575cdcd3da16f8f | p6@CPAMD8 |
| 7.14e-26 | FFCP PHASE1:Hg19::chr5:464155..464205,+#_741cf461150fd901a575cdcd3da16f8f | p@chr5:464155..464205, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr16:85617064..85617073,-#_741cf461150fd901a575cdcd3da16f8f | p@chr16:85617064..85617073, - |
| 7.14e-26 | FFCP PHASE2:Hg19::chr21:44592750..44592758,-#_741cf461150fd901a575cdcd3da16f8f | p4@CU686889 |
| 7.14e-26 | FFCP PHASE2:Hg19::chr4:140656282..140656285,-#_741cf461150fd901a575cdcd3da16f8f | p@chr4:140656282..140656285, - |
| 7.14e-26 | FFCP PHASE1:Hg19::chr21:44592512..44592521,+#_741cf461150fd901a575cdcd3da16f8f | p@chr21:44592512..44592521, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr21:36253916..36253918,-#_741cf461150fd901a575cdcd3da16f8f | p@chr21:36253916..36253918, - |
| 7.14e-26 | FFCP PHASE2:Hg19::chr13:72440726..72440736,-#_741cf461150fd901a575cdcd3da16f8f | p19@DACH1 |
| 7.14e-26 | FFCP PHASE1:Hg19::chr19:41727698..41727705,+#_741cf461150fd901a575cdcd3da16f8f | p@chr19:41727698..41727705, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr1:45769711..45769721,-#_741cf461150fd901a575cdcd3da16f8f | p@chr1:45769711..45769721, - |
| 7.14e-26 | FFCP PHASE2:Hg19::chr21:44592358..44592365,+#_741cf461150fd901a575cdcd3da16f8f | p@chr21:44592358..44592365, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr20:33903184..33903189,-#_741cf461150fd901a575cdcd3da16f8f | p11@UQCC |
| 7.14e-26 | FFCP PHASE2:Hg19::chr2:45154282..45154288,-#_741cf461150fd901a575cdcd3da16f8f | p@chr2:45154282..45154288, - |
| 7.14e-26 | FFCP PHASE1:Hg19::chr10:73406056..73406065,+#_741cf461150fd901a575cdcd3da16f8f | p@chr10:73406056..73406065, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr10:73406056..73406065,+#_741cf461150fd901a575cdcd3da16f8f | p@chr10:73406056..73406065, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr3:156322310..156322314,-#_741cf461150fd901a575cdcd3da16f8f | p@chr3:156322310..156322314, - |
| 7.14e-26 | FFCP PHASE2:Hg19::chr21:44592788..44592807,+#_741cf461150fd901a575cdcd3da16f8f | p@chr21:44592788..44592807, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr19:17137781..17137792,-#_741cf461150fd901a575cdcd3da16f8f | p6@CPAMD8 |
| 7.14e-26 | FFCP PHASE1:Hg19::chr9:100057272..100057276,+#_741cf461150fd901a575cdcd3da16f8f | p@chr9:100057272..100057276, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr7:123198284..123198329,-#_741cf461150fd901a575cdcd3da16f8f | p3@NDUFA5 |
| 7.14e-26 | FFCP PHASE1:Hg19::chr21:44592626..44592635,-#_741cf461150fd901a575cdcd3da16f8f | p5@CU686889 |
| 7.14e-26 | FFCP PHASE2:Hg19::chr1:86064794..86064797,+#_741cf461150fd901a575cdcd3da16f8f | p1@ENST00000426794 |
| 7.14e-26 | FFCP PHASE2:Hg19::chr1:115873480..115873484,+#_741cf461150fd901a575cdcd3da16f8f | p@chr1:115873480..115873484, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr5:124468141..124468176,-#_741cf461150fd901a575cdcd3da16f8f | p@chr5:124468141..124468176, - |
| 7.14e-26 | FFCP PHASE2:Hg19::chr5:45038620..45038622,+#_741cf461150fd901a575cdcd3da16f8f | p@chr5:45038620..45038622, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr2:693025..693036,+#_741cf461150fd901a575cdcd3da16f8f | p@chr2:693025..693036, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr2:10538258..10538282,+#_741cf461150fd901a575cdcd3da16f8f | p@chr2:10538258..10538282, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr4:140656282..140656285,-#_741cf461150fd901a575cdcd3da16f8f | p@chr4:140656282..140656285, - |
| 7.14e-26 | FFCP PHASE1:Hg19::chr12:56848437..56848442,-#_741cf461150fd901a575cdcd3da16f8f | p1@MIP |
| 7.14e-26 | FFCP PHASE1:Hg19::chr2:45154282..45154288,-#_741cf461150fd901a575cdcd3da16f8f | p@chr2:45154282..45154288, - |
| 7.14e-26 | FFCP PHASE1:Hg19::chr21:44592750..44592758,-#_741cf461150fd901a575cdcd3da16f8f | p4@CU686889 |
