FFCP PHASE2:Hg19::chr1:113249948..113250035,-: Difference between revisions
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(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:389 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding |HGNC=HGNC:669 |TSSclassif...") |
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| Line 2: | Line 2: | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=389 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=669 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=P08134 | ||
|association_with_transcript=0bp_to_ENST00000339083,NM_001042678,NM_175744,uc001ecq.1,uc001ecr.1,uc009wgk.1_5end | |association_with_transcript=0bp_to_ENST00000339083,NM_001042678,NM_175744,uc001ecq.1,uc001ecr.1,uc009wgk.1_5end | ||
|cluster_id=chr1:113249948..113250035,- | |cluster_id=chr1:113249948..113250035,- | ||
Latest revision as of 05:08, 16 September 2015
| Short description: | p4@RHOC |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_4_at_RHOC_5end |
| Coexpression cluster: | C843_Alveolar_Mesenchymal_Hepatic_Placental_Renal_Smooth_Fibroblast |
| Association with transcript: | 0bp_to_ENST00000339083, NM_001042678, NM_175744, uc001ecq.1, uc001ecr.1, uc009wgk.1_5end |
| EntrezGene: | RHOC |
| HGNC: | 669 |
| UniProt: | P08134 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p4@RHOC |
|---|
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| mesodermal cell | 4.56e-24 | 121 |
| embryonic cell | 9.36e-22 | 250 |
| muscle precursor cell | 1.41e-16 | 58 |
| myoblast | 1.41e-16 | 58 |
| multi-potent skeletal muscle stem cell | 1.41e-16 | 58 |
| muscle cell | 8.60e-16 | 55 |
| electrically responsive cell | 1.25e-13 | 61 |
| electrically active cell | 1.25e-13 | 61 |
| smooth muscle cell | 1.44e-13 | 43 |
| smooth muscle myoblast | 1.44e-13 | 43 |
Showing 1 to 10 of 18 entries
| Ontology term | p-value | n |
|---|---|---|
| vasculature | 1.38e-20 | 78 |
| vascular system | 1.38e-20 | 78 |
| splanchnic layer of lateral plate mesoderm | 2.93e-20 | 83 |
| epithelial vesicle | 3.55e-19 | 78 |
| epithelial tube | 5.36e-18 | 117 |
| mesenchyme | 1.38e-17 | 160 |
| entire embryonic mesenchyme | 1.38e-17 | 160 |
| cell layer | 2.68e-17 | 309 |
| vessel | 4.39e-17 | 68 |
| epithelial tube open at both ends | 7.05e-17 | 59 |
Showing 1 to 10 of 59 entries
