FFCP PHASE1:Mm9::chr7:52112679..52112724,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr7:52112679..52112724,+
|short_description=p1@Pnkp
|description=CAGE_peak_1_at_Pnkp_5end
|association_with_transcript=0bp_to_ENSMUST00000085410,ENSMUST0000009...") |
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(8 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=59047 | |EntrezGene=59047 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=3 | |||
|TSSclassifier=NA | |||
|UniProt=E9QML1,E9Q9A5 | |UniProt=E9QML1,E9Q9A5 | ||
|association_with_transcript=0bp_to_ENSMUST00000085410,ENSMUST00000098478,ENSMUST00000124168,ENSMUST00000139003,ENSMUST00000145850_5end | |||
|cluster_id=chr7:52112679..52112724,+ | |||
|description=CAGE_peak_1_at_Pnkp_5end | |||
|id=chr7:52112679..52112724,+ | |||
|ontology_enrichment_celltype=CL:0002371!2.31e-19!118;CL:0000548!1.87e-17!115;CL:0000004!1.87e-17!115;CL:0000255!1.87e-17!115;CL:0000144!2.40e-17!121;CL:0000012!2.40e-17!121;CL:0000219!5.41e-14!54;CL:0000063!1.69e-13!66;CL:0000723!1.21e-10!91;CL:0000048!1.21e-10!91;CL:0002320!5.06e-10!46;CL:0000134!5.06e-10!46;CL:0002031!1.45e-09!25;CL:0000034!1.91e-09!97;CL:0000988!1.49e-07!32;CL:0002032!1.49e-07!32;CL:0000037!1.49e-07!32;CL:0000566!1.49e-07!32;CL:0000837!1.49e-07!32;CL:0002321!6.56e-07!70;CL:0000220!6.56e-07!70;CL:0000839!9.64e-07!13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000219,5.41e-14,54;CL:0000723,1.21e-10,91;CL:0000048,1.21e-10,91;CL:0002320,5.06e-10,46;CL:0000134,5.06e-10,46;CL:0002031,1.45e-09,25;CL:0000034,1.91e-09,97;CL:0000988,1.49e-07,32;CL:0002032,1.49e-07,32;CL:0000037,1.49e-07,32;CL:0000837,1.49e-07,32;CL:0002321,6.56e-07,70;CL:0000839,9.64e-07,13 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002384!5.06e-10!46;UBERON:0002204!2.74e-08!32;UBERON:0002193!1.68e-07!48;UBERON:0002390!4.24e-07!45;UBERON:0003061!4.24e-07!45 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,5.06e-10,46;UBERON:0002204,2.74e-08,32;UBERON:0002193,1.68e-07,48;UBERON:0002405,1.68e-07,48;UBERON:0002390,4.24e-07,45;UBERON:0003061,4.24e-07,45 | |||
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| |phase1_expression=9.12848428497326,15.0059425284925,24.5699589270349,13.3084252975005,18.5331420080148,9.40123922706583,13.783145795136,22.7257049257174,6.75785866328,5.38348410540585,15.0671812038444,11.5669630543238,18.1472773727078,19.1450681297604,9.99329285446988,9.31386229993199,13.2916756844348,16.7194947639866,14.2599010949968,18.6731446791133,7.313722952992,15.0922245825346,16.4555867157529,14.2393256286132,13.0763290208287,17.8011908875656,14.2151458732495,17.2376986148711,14.251756459228,15.1218077855958,14.4124831925948,20.3209815507082,18.4519436275371,15.8481681015439,8.66554859253824,7.14808975041517,6.73758875665818,65.2909343949576,46.0987853269042,47.1171369576418,51.1761394586982,61.4740936462601,57.2902216576761,10.5753327099485,8.92116994731728,10.2786181210542,25.8189143634853,21.3664653252838,22.1883044561817,17.1098311185369,16.0984384869167,23.0004102983955,13.5903910906766,12.3311564141929,10.7550015725588,14.9210472900849,14.0401385569991,18.5641953219879,7.68802551266472,6.34789175126439,10.1413024560989,22.3637391165627,16.0073063300005,12.5985960419396,12.8552627133707,22.0248835633291,13.7816050838466,19.9793518767208,9.22837549545451,7.1553147315796,7.99234853135252,7.9982275633065,8.1721360152097,5.26710436624302,7.3801012684042,9.19218786610021,7.70811166995721,4.72443150915195,5.83704826373725,8.30883612700221,7.22752384459036,6.77187381723788,8.09630697104005,11.2552522006336,7.33431589328689,6.18720029494702,6.26435395516053,6.33758115806022,13.1006314466408,11.7891633766585,8.40607017234866,11.185510400758,5.439770669662,15.6513925574967,11.695975514058,11.2006721774334,9.97155382935438,7.15807354827843,7.79358013808606,7.77347063922748,11.5491604216878,7.69958864485907,2.54805239706646,0,23.3810324292111,17.7351905832569,22.7486000256652,7.65031994117702,6.73238497482646,9.64873903921361,8.84775166507293,8.52503339273995,8.99400439298628,10.7013074792362,6.34979018532806,11.5613264023301,7.91023896749996,3.7595832799177,7.07688441559899,6.14714029800155,8.61281921995535,7.27312879702833,13.0474232852686,6.73395833126558,8.3778682725382,8.43008282188352,5.99075622529601,9.59844369589452,6.73472203487243,4.34392854273986,5.94750783664214,6.28271760564322,7.47444576826789,9.46147192122223,6.2336413367868,7.78758062725237,7.73979165262404,7.96204611904595,6.82351447770922,7.99679052368601,6.76626303406059,7.58676944630461,5.04173963454978,5.72678307775717,5.30684693380357,6.66191345481219,7.96464658757695,4.13925393182425,4.52692785158969,6.99692496620931,7.2139960907219,7.01426343768239,10.2877482213471,3.48252166522167,5.35033554660653,6.36909653819178,7.02213187313235,9.52187256324446,9.09323198065896,5.17814431338755,3.98694301967864,5.94204802821349,5.20838418287463,6.49321964766433,5.09081472528348,5.8133486187602,5.633741429392,5.7215017759913,5.9241545968853,6.40253109908471,6.56657357321431,8.04099930839328,4.61055242111206,6.1734952629771,5.88811855979556,6.38008596751563,7.59963200862735,6.61126416658861,4.69234151177515,4.64473343720877,4.63922860759536,3.63030344322017,4.89231696458715,5.51654315726422,6.64340686162316,6.58795818896044,10.0534083520108,8.15721535368718,7.40863531052657,8.98819408654222,7.99710784536369,10.7536287557358,6.44870863240478,5.25543158004753,4.50830942692322,6.51684249105006,5.81857461502877,7.71494018793504,6.19718063817721,5.31396532726568,5.80895293013087,8.88459580236964,9.78293669387591,6.50695912292767,5.89676985339609,4.27238013531222,5.47722327748958,5.30589751455317,7.12952384987975,5.4662266115654,5.35046248357617,7.13859674289012,4.31304619582064,7.07067800570156,7.48890415474945,9.59799736199025,14.8899853223187,9.64887042726734,7.39012760666419,9.09558776498327,5.86673915191293,6.78980343100753,9.15291968325158,7.53778158488171,7.37935286746643,10.3420833364633,7.25121662888479,9.52298165489732,10.8429242687091,9.01248230936559,9.49767400262426,10.1254341007058,10.5553898757491,16.3171705145613,7.37646409528554,7.45029215022778,5.45872005958493,6.68106613575558,4.91804836130026,6.5642441073137,9.78075480190396,8.19921363022941,7.32439552291516,8.36390792833932,8.68914828921337,6.51076020814315,9.71545684019746,10.8134667427185,10.2774822266096,6.42642632843614,7.52282451603824,6.94455854302295,7.00413925220377,4.61916344323099,6.63725691699814,4.61283208694465,10.2790009368015,5.46954731292105,6.496641643377,6.14870295887855,8.78656196771952,6.18007340111759,8.55593708123331,4.74055136903724,6.32511651449993,7.21948802737308,8.85142974959849,7.56256594931503,8.14959707831353,8.14480733120051,9.75371285032505,8.02659679209317,8.39200005070817,9.13394847343798,6.33613611772018,9.95610733059955,7.27743713581374,6.76033637060068,4.03661066739764,6.57410881716899,10.1466492402666,9.52017218521355,6.99554007911642,4.82105785227325,9.22702756308404,9.49379592630823,10.0005044779644,7.53473828018764,7.79157098009843,8.23601423543482,3.39956859987711,5.03825228365169,5.2515990045681,7.63736494412091,6.32671987162271,6.506222948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| ||
|short_description=p1@Pnkp | |||
}} | }} |
Latest revision as of 20:23, 26 September 2015
Short description: | p1@Pnkp |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Pnkp_5end |
Coexpression cluster: | MCL_coexpression_mm9:3 |
Association with transcript: | 0bp_to_ENSMUST00000085410, ENSMUST00000098478, ENSMUST00000124168, ENSMUST00000139003, ENSMUST00000145850_5end |
EntrezGene: | Pnkp |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
motile cell | 5.41e-14 | 54 |
somatic stem cell | 1.21e-10 | 91 |
multi fate stem cell | 1.21e-10 | 91 |
connective tissue cell | 5.06e-10 | 46 |
mesenchymal cell | 5.06e-10 | 46 |
hematopoietic lineage restricted progenitor cell | 1.45e-09 | 25 |
stem cell | 1.91e-09 | 97 |
hematopoietic cell | 1.49e-07 | 32 |
hematopoietic oligopotent progenitor cell | 1.49e-07 | 32 |
hematopoietic stem cell | 1.49e-07 | 32 |
hematopoietic multipotent progenitor cell | 1.49e-07 | 32 |
embryonic cell | 6.56e-07 | 70 |
myeloid lineage restricted progenitor cell | 9.64e-07 | 13 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 5.06e-10 | 46 |
musculoskeletal system | 2.74e-08 | 32 |
hemolymphoid system | 1.68e-07 | 48 |
immune system | 1.68e-07 | 48 |
hematopoietic system | 4.24e-07 | 45 |
blood island | 4.24e-07 | 45 |