FFCP PHASE1:Mm9::chr9:56266431..56266488,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr9:56266431..56266488,+
|short_description=p2@Hmg20a
|description=CAGE_peak_2_at_Hmg20a_5end
|association_with_transcript=0bp_to_ENSMUST00000034879_5end
|Ent...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=66867 | |EntrezGene=66867 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=Q9DC33 | |UniProt=Q9DC33 | ||
|association_with_transcript=0bp_to_ENSMUST00000034879_5end | |||
|cluster_id=chr9:56266431..56266488,+ | |||
|description=CAGE_peak_2_at_Hmg20a_5end | |||
|id=chr9:56266431..56266488,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000153!2.21e-14!94;UBERON:0000955!1.49e-12!50;UBERON:0006238!1.49e-12!50;UBERON:0007811!2.04e-12!86;UBERON:0002616!3.39e-12!49;UBERON:0000033!3.66e-12!63;UBERON:0001049!3.53e-10!52;UBERON:0005068!3.53e-10!52;UBERON:0006241!3.53e-10!52;UBERON:0007135!3.53e-10!52;UBERON:0003080!7.91e-10!40;UBERON:0003056!1.43e-09!49;UBERON:0002780!2.86e-09!39;UBERON:0001890!2.86e-09!39;UBERON:0006240!2.86e-09!39;UBERON:0002791!1.13e-08!29;UBERON:0003528!1.13e-08!29;UBERON:0001893!1.13e-08!29;UBERON:0002346!1.30e-08!71;UBERON:0003075!1.30e-08!71;UBERON:0007284!1.30e-08!71;UBERON:0000477!1.90e-08!154;UBERON:0004111!6.85e-08!122;UBERON:0000475!1.03e-07!200;UBERON:0000025!1.21e-07!114;UBERON:0002020!1.37e-07!34;UBERON:0002021!2.02e-07!10;UBERON:0000411!2.02e-07!10;UBERON:0001950!2.02e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.13e-11,54;UBERON:0000955,5.82e-11,47;UBERON:0006238,5.82e-11,47;UBERON:0002616,1.29e-10,46;UBERON:0001049,3.53e-10,52;UBERON:0005068,3.53e-10,52;UBERON:0006241,3.53e-10,52;UBERON:0007135,3.53e-10,52;UBERON:0003080,7.91e-10,40;UBERON:0003056,1.43e-09,49;UBERON:0002780,2.86e-09,39;UBERON:0001890,2.86e-09,39;UBERON:0006240,2.86e-09,39;UBERON:0003528,1.13e-08,29;UBERON:0002791,1.13e-08,29;UBERON:0001893,1.13e-08,29;UBERON:0010314,1.21e-08,92;UBERON:0002346,2.38e-08,64;UBERON:0003075,2.38e-08,64;UBERON:0007284,2.38e-08,64;UBERON:0004111,6.85e-08,122;UBERON:0010371,7.02e-08,73;UBERON:0000025,1.21e-07,114;UBERON:0002020,1.37e-07,34;UBERON:0002021,2.02e-07,10;UBERON:0000411,2.02e-07,10;UBERON:0001950,2.02e-07,10 | |||
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| ||
|short_description=p2@Hmg20a | |||
}} | }} |
Latest revision as of 21:07, 26 September 2015
Short description: | p2@Hmg20a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Hmg20a_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000034879_5end |
EntrezGene: | Hmg20a |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 3.13e-11 | 54 |
brain | 5.82e-11 | 47 |
future brain | 5.82e-11 | 47 |
regional part of brain | 1.29e-10 | 46 |
neural tube | 3.53e-10 | 52 |
neural rod | 3.53e-10 | 52 |
future spinal cord | 3.53e-10 | 52 |
neural keel | 3.53e-10 | 52 |
anterior neural tube | 7.91e-10 | 40 |
pre-chordal neural plate | 1.43e-09 | 49 |
regional part of forebrain | 2.86e-09 | 39 |
forebrain | 2.86e-09 | 39 |
future forebrain | 2.86e-09 | 39 |
brain grey matter | 1.13e-08 | 29 |
regional part of telencephalon | 1.13e-08 | 29 |
telencephalon | 1.13e-08 | 29 |
structure with developmental contribution from neural crest | 1.21e-08 | 92 |
neurectoderm | 2.38e-08 | 64 |
neural plate | 2.38e-08 | 64 |
presumptive neural plate | 2.38e-08 | 64 |
anatomical conduit | 6.85e-08 | 122 |
ecto-epithelium | 7.02e-08 | 73 |
tube | 1.21e-07 | 114 |
gray matter | 1.37e-07 | 34 |
occipital lobe | 2.02e-07 | 10 |
visual cortex | 2.02e-07 | 10 |
neocortex | 2.02e-07 | 10 |