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{{UBERON
{{UBERON
|id=UBERON:0000072
|alt_id=
|name=segment of respiratory tract
|namespace=
|def="An organ segment that is part of a respiratory tract [Obol]." [OBOL:automatic]
|xref=MA:0000434
|is_a=UBERON:0000063;;UBERON:0004119
|synonym="respiratory tract" RELATED [MA:0000434]
|comment=Note that MA:0000434 has subclasses upper and lower, so it corresponds to a segment of the tract, rather than the tract as a whole
|comment=Note that MA:0000434 has subclasses upper and lower, so it corresponds to a segment of the tract, rather than the tract as a whole
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="An organ segment that is part of a respiratory tract [Obol]." [OBOL:automatic]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0000072
|is_a=UBERON:0000063 ;;UBERON:0004119
|is_obsolete=
|located_in=
|located_in=
|name=segment of respiratory tract
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000065
|part_of=UBERON:0000065
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=
|synonym="respiratory tract" RELATED [MA:0000434]
|union_of=
|xref=MA:0000434
}}
}}

Latest revision as of 17:05, 12 September 2014

Name:segment of respiratory tract
Namespace:FANTOM
Definition:"An organ segment that is part of a respiratory tract [Obol]." [OBOL:automatic]
Xrefs:
links:
MA:0000434
Synonyms: "respiratory tract" RELATED [MA:0000434]
Comments:Note that MA:0000434 has subclasses upper and lower, so it corresponds to a segment of the tract, rather than the tract as a whole

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000063(organ segment),UBERON:0004119(endoderm-derived structure)
part_of:UBERON:0000065(respiratory tract)



Children

is a:UBERON:0001557 (upper respiratory tract),UBERON:0001558 (lower respiratory tract),UBERON:0002186 (bronchiole)
part of:UBERON:0004802 (respiratory tract epithelium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000072 (segment of respiratory tract), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
6.59e-58FFCP PHASE1:Mm9::chr6:41483113..41483131,+#_5669da61545a854c3a0d12d74ce419c3p4@uc009bpa.1
6.59e-58FFCP PHASE2:Mm9::chr6:41483113..41483131,+#_5669da61545a854c3a0d12d74ce419c3p4@uc009bpa.1
4.47e-57FFCP PHASE1:Mm9::chr6:41483037..41483046,+#_5a405d23179773a8be9cdb73cbeb8831p8@uc009bpa.1
4.47e-57FFCP PHASE2:Mm9::chr6:41483037..41483046,+#_5a405d23179773a8be9cdb73cbeb8831p8@uc009bpa.1
1.73e-55FFCP PHASE2:Mm9::chr6:41485075..41485096,+#_efe78cfa36f93121935dd5deaa0af182p1@ENSMUST00000103288, p1@uc009bpl.1
1.73e-55FFCP PHASE1:Mm9::chr6:41485075..41485096,+#_efe78cfa36f93121935dd5deaa0af182p1@ENSMUST00000103288, p1@uc009bpl.1
1.82e-54FFCP PHASE1:Mm9::chr6:41491752..41491776,-#_fcf46c76edce8a88518945785d677c2fp@chr6:41491752..41491776, -
1.82e-54FFCP PHASE2:Mm9::chr6:41491752..41491776,-#_fcf46c76edce8a88518945785d677c2fp@chr6:41491752..41491776, -
1.82e-54FFCP PHASE1:Mm9::chr12:108361918..108361930,-#_fcf46c76edce8a88518945785d677c2fp@chr12:108361918..108361930, -
1.82e-54FFCP PHASE2:Mm9::chr12:108361918..108361930,-#_fcf46c76edce8a88518945785d677c2fp@chr12:108361918..108361930, -
2.68e-53FFCP PHASE1:Mm9::chr6:41483173..41483188,+#_b4c83541cfa3bae6d09d33e32ba86bf2p2@ENSMUST00000103283
2.68e-53FFCP PHASE2:Mm9::chr6:41483173..41483188,+#_b4c83541cfa3bae6d09d33e32ba86bf2p2@ENSMUST00000103283
3.26e-53FFCP PHASE1:Mm9::chr6:41484803..41484826,+#_aa81a274d688877b02964924f7d1d45ap1@ENSMUST00000103287, p1@uc009bpi.1, p1@uc009bpj.1
3.26e-53FFCP PHASE2:Mm9::chr6:41484803..41484826,+#_aa81a274d688877b02964924f7d1d45ap1@ENSMUST00000103287, p1@uc009bpi.1, p1@uc009bpj.1
3.39e-52FFCP PHASE1:Mm9::chr9:44807434..44807445,-#_18efd7303b8ff2fd249ab88e2529c37bp@chr9:44807434..44807445, -
3.39e-52FFCP PHASE2:Mm9::chr9:44807434..44807445,-#_18efd7303b8ff2fd249ab88e2529c37bp@chr9:44807434..44807445, -
3.7e-52FFCP PHASE1:Mm9::chr6:41494001..41494028,+#_759f4bd995e7d7fe5277120a3cb6c955p@chr6:41494001..41494028, +
3.7e-52FFCP PHASE2:Mm9::chr6:41494001..41494028,+#_759f4bd995e7d7fe5277120a3cb6c955p@chr6:41494001..41494028, +
8.3e-52FFCP PHASE2:Mm9::chr2:11093788..11093799,+#_c7b10129a875aeb77e16e4d941e9fcb3p11@Prkcq
8.3e-52FFCP PHASE1:Mm9::chr2:11093788..11093799,+#_c7b10129a875aeb77e16e4d941e9fcb3p11@Prkcq
8.95e-52FFCP PHASE1:Mm9::chr9:44809185..44809215,-#_6e1726dc5d6e5d6abd80d9d850ca4006p@chr9:44809185..44809215, -
8.95e-52FFCP PHASE2:Mm9::chr9:44809185..44809215,-#_6e1726dc5d6e5d6abd80d9d850ca4006p@chr9:44809185..44809215, -
1.93e-51FFCP PHASE1:Mm9::chr14:54791784..54791787,+#_11265b55649ac47443b59fe8c6713f8ep@chr14:54791784..54791787, +
1.93e-51FFCP PHASE2:Mm9::chr14:54791784..54791787,+#_11265b55649ac47443b59fe8c6713f8ep@chr14:54791784..54791787, +
3.14e-51FFCP PHASE1:Mm9::chr6:40997465..40997489,+#_48eddf473bd6825794d1a0e1fa59e069p1@ENSMUST00000103263
3.14e-51FFCP PHASE2:Mm9::chr6:40997465..40997489,+#_48eddf473bd6825794d1a0e1fa59e069p1@ENSMUST00000103263
6.04e-51FFCP PHASE1:Mm9::chr9:44793518..44793537,+#_f7f324a9c82132b285ffa061b3b0fae5p@chr9:44793518..44793537, +
6.04e-51FFCP PHASE2:Mm9::chr9:44793518..44793537,+#_f7f324a9c82132b285ffa061b3b0fae5p@chr9:44793518..44793537, +
6.18e-51FFCP PHASE2:Mm9::chr10:28388454..28388458,+#_f5fb80251d800a5272331523f344dc1cp5@Themis
6.18e-51FFCP PHASE1:Mm9::chr10:28388454..28388458,+#_f5fb80251d800a5272331523f344dc1cp5@Themis
7.06e-51FFCP PHASE1:Mm9::chr6:41482920..41482933,+#_e51e030da76eca5ac5cddf9927e8fad8p5@uc009bpa.1
7.06e-51FFCP PHASE2:Mm9::chr6:41482920..41482933,+#_e51e030da76eca5ac5cddf9927e8fad8p5@uc009bpa.1
7.52e-51FFCP PHASE2:Mm9::chr6:41071548..41071565,+#_408c46c282b0d6b80ccce60e98b15b2fp@chr6:41071548..41071565, +
7.52e-51FFCP PHASE1:Mm9::chr6:41071548..41071565,+#_408c46c282b0d6b80ccce60e98b15b2fp@chr6:41071548..41071565, +
1.56e-50FFCP PHASE1:Mm9::chr6:40997323..40997349,+#_21f81d16107905d27074f2b9d50d78ffp2@uc009bnp.1, p2@uc012eki.1
1.56e-50FFCP PHASE2:Mm9::chr6:40997323..40997349,+#_21f81d16107905d27074f2b9d50d78ffp2@uc009bnp.1, p2@uc012eki.1
8.48e-50FFCP PHASE2:Mm9::chr11:52095797..52095809,-#_c44e5d2b51538940984d6d0a25496991p5@Tcf7
8.48e-50FFCP PHASE1:Mm9::chr11:52095797..52095809,-#_c44e5d2b51538940984d6d0a25496991p5@Tcf7
2.7e-49FFCP PHASE2:Mm9::chr14:61328148..61328173,+#_39bf031cdd1fb91c484bcbda7f9b7741p@chr14:61328148..61328173, +
2.7e-49FFCP PHASE1:Mm9::chr14:61328148..61328173,+#_39bf031cdd1fb91c484bcbda7f9b7741p@chr14:61328148..61328173, +
4.69e-49FFCP PHASE2:Mm9::chr6:41483016..41483036,+#_b77f0179e46ff8c5141028037fb4e07ep2@uc009bpa.1
4.69e-49FFCP PHASE1:Mm9::chr6:41483016..41483036,+#_b77f0179e46ff8c5141028037fb4e07ep2@uc009bpa.1
5.29e-49FFCP PHASE2:Mm9::chrX:39855684..39855699,+#_6927434b0908a6ee766905b332821f23p2@Sh2d1a
5.29e-49FFCP PHASE1:Mm9::chrX:39855684..39855699,+#_6927434b0908a6ee766905b332821f23p2@Sh2d1a
6.55e-49FFCP PHASE2:Mm9::chr6:41128981..41128995,+#_9da35900742a31a2bff6a7915b0db52bp1@uc012ekr.1
6.55e-49FFCP PHASE1:Mm9::chr6:41128981..41128995,+#_9da35900742a31a2bff6a7915b0db52bp1@uc012ekr.1
8.0e-49FFCP PHASE2:Mm9::chr6:40841675..40841691,+#_3f53e9f298b45ade4dd161920a375ef1p2@1810009J06Rik
8.0e-49FFCP PHASE1:Mm9::chr6:40841675..40841691,+#_3f53e9f298b45ade4dd161920a375ef1p2@1810009J06Rik
1.12e-48FFCP PHASE2:Mm9::chr6:41066036..41066054,+#_ab5abc746789efa771f6e5a0c263a325p1@uc012ekk.1
1.12e-48FFCP PHASE1:Mm9::chr6:41066036..41066054,+#_ab5abc746789efa771f6e5a0c263a325p1@uc012ekk.1
1.27e-48FFCP PHASE1:Mm9::chr6:41009432..41009454,+#_fdedb34cd5f72a93b7e3e528d454675fp1@ENSMUST00000103265
1.27e-48FFCP PHASE2:Mm9::chr6:41491943..41491953,+#_fdedb34cd5f72a93b7e3e528d454675fp3@uc009bpo.1, p3@uc009bpp.1
1.27e-48FFCP PHASE2:Mm9::chr6:41009432..41009454,+#_fdedb34cd5f72a93b7e3e528d454675fp1@ENSMUST00000103265
1.27e-48FFCP PHASE1:Mm9::chr6:41491943..41491953,+#_fdedb34cd5f72a93b7e3e528d454675fp3@uc009bpo.1, p3@uc009bpp.1
2.25e-48FFCP PHASE2:Mm9::chr7:133512043..133512060,-#_2808e1f26efae3cb6fac2b2103c6088cp@chr7:133512043..133512060, -
2.25e-48FFCP PHASE1:Mm9::chr7:133512043..133512060,-#_2808e1f26efae3cb6fac2b2103c6088cp@chr7:133512043..133512060, -
3.02e-48FFCP PHASE2:Mm9::chr6:41128837..41128859,+#_3758c3433bb095111de1ee0fe9250216p2@Gm5409
3.02e-48FFCP PHASE1:Mm9::chr6:41128837..41128859,+#_3758c3433bb095111de1ee0fe9250216p2@Gm5409
3.92e-48FFCP PHASE1:Mm9::chr16:48772258..48772270,-#_6067b8630a3ad4cfb39050242233c50ap5@Trat1
3.92e-48FFCP PHASE2:Mm9::chr16:48772258..48772270,-#_6067b8630a3ad4cfb39050242233c50ap5@Trat1
4.8e-48FFCP PHASE1:Mm9::chr6:41489240..41489252,+#_c8c097b2e797f16f6cbaf677b32164b3p@chr6:41489240..41489252, +
4.8e-48FFCP PHASE2:Mm9::chr6:41489240..41489252,+#_c8c097b2e797f16f6cbaf677b32164b3p@chr6:41489240..41489252, +
5.53e-48FFCP PHASE2:Mm9::chr16:48772215..48772256,-#_44bc7f8e2ae27f0001fe0f03234d712dp4@Trat1
5.53e-48FFCP PHASE1:Mm9::chr16:48772215..48772256,-#_44bc7f8e2ae27f0001fe0f03234d712dp4@Trat1
7.84e-48FFCP PHASE1:Mm9::chr6:41231266..41231303,+#_f4b3a1cf828658ccc1caf1194e45f4d4p1@ENSMUST00000103282
7.84e-48FFCP PHASE2:Mm9::chr6:41494376..41494389,-#_f4b3a1cf828658ccc1caf1194e45f4d4p@chr6:41494376..41494389, -
7.84e-48FFCP PHASE2:Mm9::chr6:41231266..41231303,+#_f4b3a1cf828658ccc1caf1194e45f4d4p1@ENSMUST00000103282
7.84e-48FFCP PHASE1:Mm9::chr6:41494376..41494389,-#_f4b3a1cf828658ccc1caf1194e45f4d4p@chr6:41494376..41494389, -
8.51e-48FFCP PHASE1:Mm9::chr14:54794540..54794554,+#_eb3e27494570edbf46747b4ebe312150p@chr14:54794540..54794554, +
8.51e-48FFCP PHASE2:Mm9::chr14:54794540..54794554,+#_eb3e27494570edbf46747b4ebe312150p@chr14:54794540..54794554, +
9.15e-48FFCP PHASE2:Mm9::chr14:54496363..54496388,+#_ffb36df6b721a7f1f3f466cd092d750cp@chr14:54496363..54496388, +
9.15e-48FFCP PHASE1:Mm9::chr6:41491801..41491815,-#_ffb36df6b721a7f1f3f466cd092d750cp@chr6:41491801..41491815, -
9.15e-48FFCP PHASE2:Mm9::chr6:41491801..41491815,-#_ffb36df6b721a7f1f3f466cd092d750cp@chr6:41491801..41491815, -
9.15e-48FFCP PHASE1:Mm9::chr14:54496363..54496388,+#_ffb36df6b721a7f1f3f466cd092d750cp@chr14:54496363..54496388, +
1.12e-47FFCP PHASE1:Mm9::chr6:41484314..41484337,+#_5e75c5648f9cfaf8b9bc4e5889eb9652p1@ENSMUST00000103286, p1@uc009bpg.1, p1@uc009bph.1
1.12e-47FFCP PHASE2:Mm9::chr6:41484314..41484337,+#_5e75c5648f9cfaf8b9bc4e5889eb9652p1@ENSMUST00000103286, p1@uc009bpg.1, p1@uc009bph.1
1.14e-47FFCP PHASE2:Mm9::chr7:133512914..133512925,-#_113554b6854a5329924912782b9b109ep7@Lat
1.14e-47FFCP PHASE1:Mm9::chr7:133512914..133512925,-#_113554b6854a5329924912782b9b109ep7@Lat
1.19e-47FFCP PHASE1:Mm9::chr11:53448200..53448205,-#_56144a0bfb92d9e4870804a696dece2dp1@Il13
1.19e-47FFCP PHASE2:Mm9::chr11:53448200..53448205,-#_56144a0bfb92d9e4870804a696dece2dp1@Il13
1.22e-47FFCP PHASE2:Mm9::chr6:41138311..41138333,+#_0bc82459fb262abf2469c77364377734p@chr6:41138311..41138333, +
1.22e-47FFCP PHASE1:Mm9::chr6:41138311..41138333,+#_0bc82459fb262abf2469c77364377734p@chr6:41138311..41138333, +
1.42e-47FFCP PHASE2:Mm9::chr6:41493801..41493826,+#_d99f7af26d9a0c5bf80d4fcf89f18983p1@ENSMUST00000103298, p1@uc009bpy.1
1.42e-47FFCP PHASE1:Mm9::chr6:41493801..41493826,+#_d99f7af26d9a0c5bf80d4fcf89f18983p1@ENSMUST00000103298, p1@uc009bpy.1
1.49e-47FFCP PHASE1:Mm9::chr7:133512935..133512936,-#_0a802cd1389d808af7e5a94a5be398c9p8@Lat
1.49e-47FFCP PHASE2:Mm9::chr7:133512935..133512936,-#_0a802cd1389d808af7e5a94a5be398c9p8@Lat
1.49e-47FFCP PHASE2:Mm9::chr6:41483146..41483158,+#_0a802cd1389d808af7e5a94a5be398c9p6@uc009bpa.1
1.49e-47FFCP PHASE1:Mm9::chr6:41483146..41483158,+#_0a802cd1389d808af7e5a94a5be398c9p6@uc009bpa.1
1.49e-47FFCP PHASE1:Mm9::chr4:125978325..125978339,-#_0a802cd1389d808af7e5a94a5be398c9p@chr4:125978325..125978339, -
1.49e-47FFCP PHASE2:Mm9::chr4:125978325..125978339,-#_0a802cd1389d808af7e5a94a5be398c9p@chr4:125978325..125978339, -
1.52e-47FFCP PHASE1:Mm9::chr6:40996879..40996890,+#_c8fcb6c6b3fa4df9aae3a1972a80d46ep5@uc009bnp.1, p5@uc012eki.1
1.52e-47FFCP PHASE2:Mm9::chr6:40996879..40996890,+#_c8fcb6c6b3fa4df9aae3a1972a80d46ep5@uc009bnp.1, p5@uc012eki.1
1.6e-47FFCP PHASE1:Mm9::chr6:41492643..41492662,+#_1f27b30c87f148f4c3b6a8c143756d72p@chr6:41492643..41492662, +
1.6e-47FFCP PHASE2:Mm9::chr6:41492643..41492662,+#_1f27b30c87f148f4c3b6a8c143756d72p@chr6:41492643..41492662, +
1.9e-47FFCP PHASE2:Mm9::chr6:41492605..41492621,+#_9eed44d9ad8d66b99c33e54bec3d1764p@chr6:41492605..41492621, +
1.9e-47FFCP PHASE1:Mm9::chr6:41492605..41492621,+#_9eed44d9ad8d66b99c33e54bec3d1764p@chr6:41492605..41492621, +
1.49e-46FFCP PHASE1:Mm9::chr19:10904535..10904553,-#_d9ede8f053ec35dbbee23867683ba1cbp2@Cd6
1.49e-46FFCP PHASE2:Mm9::chr19:10904535..10904553,-#_d9ede8f053ec35dbbee23867683ba1cbp2@Cd6
1.59e-46FFCP PHASE1:Mm9::chr11:52075039..52075066,+#_5c17ebc8827aeb3893c6d24411a6eafdp@chr11:52075039..52075066, +
1.59e-46FFCP PHASE2:Mm9::chr11:52075039..52075066,+#_5c17ebc8827aeb3893c6d24411a6eafdp@chr11:52075039..52075066, +

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