UBERON:0002331: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0002331
|name=umbilical cord
|namespace=
|def="The connecting cord from the developing embryo or fetus to the placenta. During prenatal development, th...") |
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{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:FMA_85541-MIAA_0000280 | ||
|comment=This class was created automatically from a combination of ontologies | |comment=This class was created automatically from a combination of ontologies | ||
|created_by= | |created_by= | ||
| | |def="The connecting cord from the developing embryo or fetus to the placenta. During prenatal development, the umbilical cord comes from the same zygote as the fetus and (in humans) normally contains two arteries (the umbilical arteries) and one vein (the umbilical vein), buried within Wharton's jelly. The umbilical vein supplies the fetus with oxygenated, nutrient-rich blood from the placenta. Conversely, the umbilical arteries return the deoxygenated, nutrient-depleted blood[WP]." [Wikipedia:Umbilical_cord] | ||
|derives_from= | |derives_from= | ||
|develops_from=UBERON:0007806 | |develops_from=UBERON:0007806 | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0002331 | |||
|is_a=UBERON:0000478 ;;UBERON:0004120 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=umbilical cord | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|subset=uberon_slim | |||
|synonym="birth cord" RELATED [Wikipedia:Umbilical_cord];;"connecting stalk" RELATED [];;"funiculus umbilicalis" RELATED LATIN [Wikipedia:Umbilical_cord];;"yolk stalk" RELATED [BTO:0001415] | |||
|union_of= | |||
|xref=BTO:0001415;;EFO:0001415;;EHDAA2:0000312;;EHDAA:158;;EMAPA:26115;;EV:0100127;;FMA:85541;;GAID:517;;http://upload.wikimedia.org/wikipedia/commons/f/f3/Umbilicalcord.jpg;;MAT:0000280;;MESH:A.16.254.789;;MIAA:0000280;;ncithesaurus:Umbilical_Cord;;OpenCyc:Mx4rvyewDJwpEbGdrcN5Y29ycA;;SCTID:280644003 | |||
}} | }} | ||
Latest revision as of 17:29, 12 September 2014
| Name: | umbilical cord | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "The connecting cord from the developing embryo or fetus to the placenta. During prenatal development, the umbilical cord comes from the same zygote as the fetus and (in humans) normally contains two arteries (the umbilical arteries) and one vein (the umbilical vein), buried within Wharton's jelly. The umbilical vein supplies the fetus with oxygenated, nutrient-rich blood from the placenta. Conversely, the umbilical arteries return the deoxygenated, nutrient-depleted blood[WP]." [Wikipedia:Umbilical_cord] | ||
| Xrefs: |
| ||
| Synonyms: |
"birth cord" RELATED [Wikipedia:Umbilical_cord] "connecting stalk" RELATED [] "funiculus umbilicalis" RELATED LATIN [Wikipedia:Umbilical_cord] "yolk stalk" RELATED [BTO:0001415] | ||
| Comments: | This class was created automatically from a combination of ontologies | ||
| Alt_id: | UBERON:FMA_85541-MIAA_0000280 | ||
| Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000478(extraembryonic structure),UBERON:0004120(mesoderm-derived structure) |
|---|---|
| develops_from: | UBERON:0007806(connecting stalk) |
Children
| derives from: | FF:0010057 (human umbilical cord - fetal sample) |
|---|---|
| part of: | UBERON:0003422 (mesenchyme of umbilical cord),FF:0104053 (umbilical cord blood sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10057-101H3 (umbilical cord, fetal, donor1)
- 10449-106F8 (cord blood derived cell line:COBL-a untreated)
- 10452-106G2 (cord blood derived cell line:COBL-a 24h infection(-C))
- 10453-106G3 (cord blood derived cell line:COBL-a 24h infection)
- 11214-116A8 (Mesenchymal stem cells - umbilical, donor0)
- 11539-120A9 (Mesenchymal Stem Cells - umbilical, donor1)
- 11548-120B9 (Mesenchymal Stem Cells - Wharton's Jelly, donor1)
- 11549-120C1 (Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor1)
- 11619-122A8 (Mesenchymal Stem Cells - umbilical, donor2)
- 11628-122B8
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002331 (umbilical cord), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.79e-79 | FFCP PHASE1:Hg19::chr10:120921270..120921282,-#_b1f53b4104117419432a90bde3004659 | p@chr10:120921270..120921282, - |
| 5.79e-79 | FFCP PHASE1:Hg19::chr7:135931480..135931486,+#_b1f53b4104117419432a90bde3004659 | p@chr7:135931480..135931486, + |
| 5.79e-79 | FFCP PHASE2:Hg19::chr10:120921270..120921282,-#_b1f53b4104117419432a90bde3004659 | p@chr10:120921270..120921282, - |
| 5.79e-79 | FFCP PHASE2:Hg19::chr7:135931480..135931486,+#_b1f53b4104117419432a90bde3004659 | p@chr7:135931480..135931486, + |
| 2.16e-63 | FFCP PHASE1:Hg19::chr1:205744117..205744127,-#_6a61d131cb0e221659f34618ed5a25d9 | p8@RAB7L1 |
| 2.16e-63 | FFCP PHASE2:Hg19::chr1:205744117..205744127,-#_6a61d131cb0e221659f34618ed5a25d9 | p8@RAB7L1 |
| 1.1e-59 | FFCP PHASE1:Hg19::chr3:45926401..45926410,-#_382bd565ee725ff3582ffa4a19459ded | p@chr3:45926401..45926410, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr4:167951900..167951907,-#_382bd565ee725ff3582ffa4a19459ded | p@chr4:167951900..167951907, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr3:189266272..189266296,-#_382bd565ee725ff3582ffa4a19459ded | p@chr3:189266272..189266296, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr2:45063061..45063082,-#_382bd565ee725ff3582ffa4a19459ded | p@chr2:45063061..45063082, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr6:149464325..149464336,-#_382bd565ee725ff3582ffa4a19459ded | p@chr6:149464325..149464336, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr2:228216610..228216617,+#_382bd565ee725ff3582ffa4a19459ded | p18@MFF |
| 1.1e-59 | FFCP PHASE2:Hg19::chr1:146746588..146746604,+#_382bd565ee725ff3582ffa4a19459ded | p5@CHD1L |
| 1.1e-59 | FFCP PHASE1:Hg19::chr3:157301317..157301362,-#_382bd565ee725ff3582ffa4a19459ded | p@chr3:157301317..157301362, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr4:36393818..36393829,-#_382bd565ee725ff3582ffa4a19459ded | p2@ENST00000504344 |
| 1.1e-59 | FFCP PHASE2:Hg19::chr19:42682291..42682301,-#_382bd565ee725ff3582ffa4a19459ded | p@chr19:42682291..42682301, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr7:106397647..106397655,+#_382bd565ee725ff3582ffa4a19459ded | p@chr7:106397647..106397655, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr6:491208..491217,-#_382bd565ee725ff3582ffa4a19459ded | p@chr6:491208..491217, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr22:20105576..20105585,+#_382bd565ee725ff3582ffa4a19459ded | p11@RANBP1 |
| 1.1e-59 | FFCP PHASE1:Hg19::chr1:212870782..212870788,-#_382bd565ee725ff3582ffa4a19459ded | p@chr1:212870782..212870788, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr8:38216859..38216889,-#_382bd565ee725ff3582ffa4a19459ded | p@chr8:38216859..38216889, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr7:106363986..106363994,-#_382bd565ee725ff3582ffa4a19459ded | p@chr7:106363986..106363994, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr20:22771722..22771733,+#_382bd565ee725ff3582ffa4a19459ded | p@chr20:22771722..22771733, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr2:15633244..15633249,+#_382bd565ee725ff3582ffa4a19459ded | p@chr2:15633244..15633249, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr7:142250880..142250889,-#_382bd565ee725ff3582ffa4a19459ded | p4@AF430683, p4@AF430684, p4@AF430685 |
| 1.1e-59 | FFCP PHASE1:Hg19::chr4:167938808..167938815,-#_382bd565ee725ff3582ffa4a19459ded | p@chr4:167938808..167938815, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr2:148282641..148282654,+#_382bd565ee725ff3582ffa4a19459ded | p@chr2:148282641..148282654, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr14:76957775..76957781,+#_382bd565ee725ff3582ffa4a19459ded | p@chr14:76957775..76957781, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr3:180050773..180050786,+#_382bd565ee725ff3582ffa4a19459ded | p@chr3:180050773..180050786, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr21:18170731..18170736,-#_382bd565ee725ff3582ffa4a19459ded | p@chr21:18170731..18170736, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr11:128154946..128154955,+#_382bd565ee725ff3582ffa4a19459ded | p@chr11:128154946..128154955, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr2:228216642..228216661,+#_382bd565ee725ff3582ffa4a19459ded | p11@MFF |
| 1.1e-59 | FFCP PHASE1:Hg19::chr22:37484406..37484413,+#_382bd565ee725ff3582ffa4a19459ded | p@chr22:37484406..37484413, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr9:74986248..74986275,-#_382bd565ee725ff3582ffa4a19459ded | p@chr9:74986248..74986275, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr12:77198556..77198565,+#_382bd565ee725ff3582ffa4a19459ded | p@chr12:77198556..77198565, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr20:38442102..38442111,+#_382bd565ee725ff3582ffa4a19459ded | p@chr20:38442102..38442111, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr14:76957775..76957781,+#_382bd565ee725ff3582ffa4a19459ded | p@chr14:76957775..76957781, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr7:135735084..135735112,+#_382bd565ee725ff3582ffa4a19459ded | p@chr7:135735084..135735112, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr21:18180126..18180130,-#_382bd565ee725ff3582ffa4a19459ded | p@chr21:18180126..18180130, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr17:40021018..40021028,+#_382bd565ee725ff3582ffa4a19459ded | p@chr17:40021018..40021028, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr2:53245239..53245255,-#_382bd565ee725ff3582ffa4a19459ded | p@chr2:53245239..53245255, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr9:74997054..74997058,-#_382bd565ee725ff3582ffa4a19459ded | p@chr9:74997054..74997058, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr7:17543537..17543548,-#_382bd565ee725ff3582ffa4a19459ded | p@chr7:17543537..17543548, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr4:167983163..167983209,-#_382bd565ee725ff3582ffa4a19459ded | p@chr4:167983163..167983209, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr19:49488921..49488932,-#_382bd565ee725ff3582ffa4a19459ded | p@chr19:49488921..49488932, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr3:111319059..111319101,-#_382bd565ee725ff3582ffa4a19459ded | p@chr3:111319059..111319101, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr1:207617923..207617929,-#_382bd565ee725ff3582ffa4a19459ded | p@chr1:207617923..207617929, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr17:1985278..1985290,-#_382bd565ee725ff3582ffa4a19459ded | p@chr17:1985278..1985290, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr10:120921395..120921406,-#_382bd565ee725ff3582ffa4a19459ded | p@chr10:120921395..120921406, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr6:87324164..87324175,+#_382bd565ee725ff3582ffa4a19459ded | p@chr6:87324164..87324175, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr6:149490934..149490939,-#_382bd565ee725ff3582ffa4a19459ded | p@chr6:149490934..149490939, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr6:42362820..42362827,-#_382bd565ee725ff3582ffa4a19459ded | p@chr6:42362820..42362827, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr4:167932279..167932291,-#_382bd565ee725ff3582ffa4a19459ded | p@chr4:167932279..167932291, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr2:2930946..2930963,+#_382bd565ee725ff3582ffa4a19459ded | p@chr2:2930946..2930963, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr3:119281371..119281382,-#_382bd565ee725ff3582ffa4a19459ded | p@chr3:119281371..119281382, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr12:129054695..129054717,-#_382bd565ee725ff3582ffa4a19459ded | p@chr12:129054695..129054717, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr19:40074306..40074328,+#_382bd565ee725ff3582ffa4a19459ded | p@chr19:40074306..40074328, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr3:119279036..119279047,+#_382bd565ee725ff3582ffa4a19459ded | p@chr3:119279036..119279047, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr21:18180062..18180079,-#_382bd565ee725ff3582ffa4a19459ded | p@chr21:18180062..18180079, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr5:28145264..28145272,-#_382bd565ee725ff3582ffa4a19459ded | p@chr5:28145264..28145272, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr9:74996801..74996811,-#_382bd565ee725ff3582ffa4a19459ded | p@chr9:74996801..74996811, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr10:31996512..31996530,-#_382bd565ee725ff3582ffa4a19459ded | p5@ENST00000433770 |
| 1.1e-59 | FFCP PHASE1:Hg19::chr7:106363860..106363870,-#_382bd565ee725ff3582ffa4a19459ded | p@chr7:106363860..106363870, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr3:45926401..45926410,-#_382bd565ee725ff3582ffa4a19459ded | p@chr3:45926401..45926410, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr22:37484379..37484392,+#_382bd565ee725ff3582ffa4a19459ded | p@chr22:37484379..37484392, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr2:148293141..148293150,+#_382bd565ee725ff3582ffa4a19459ded | p@chr2:148293141..148293150, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr7:102945487..102945492,+#_382bd565ee725ff3582ffa4a19459ded | p@chr7:102945487..102945492, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr3:75655787..75655802,-#_382bd565ee725ff3582ffa4a19459ded | p@chr3:75655787..75655802, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr10:120924761..120924770,-#_382bd565ee725ff3582ffa4a19459ded | p10@SFXN4 |
| 1.1e-59 | FFCP PHASE2:Hg19::chr14:76017386..76017395,-#_382bd565ee725ff3582ffa4a19459ded | p@chr14:76017386..76017395, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr12:129054695..129054717,-#_382bd565ee725ff3582ffa4a19459ded | p@chr12:129054695..129054717, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr2:228216535..228216554,+#_382bd565ee725ff3582ffa4a19459ded | p14@MFF |
| 1.1e-59 | FFCP PHASE2:Hg19::chr6:138023078..138023089,-#_382bd565ee725ff3582ffa4a19459ded | p@chr6:138023078..138023089, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chrX:109653507..109653518,+#_382bd565ee725ff3582ffa4a19459ded | p@chrX:109653507..109653518, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr3:195306434..195306439,-#_382bd565ee725ff3582ffa4a19459ded | p10@APOD |
| 1.1e-59 | FFCP PHASE1:Hg19::chr19:53511711..53511720,-#_382bd565ee725ff3582ffa4a19459ded | p@chr19:53511711..53511720, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr14:76017386..76017395,-#_382bd565ee725ff3582ffa4a19459ded | p@chr14:76017386..76017395, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr7:135705366..135705371,+#_382bd565ee725ff3582ffa4a19459ded | p@chr7:135705366..135705371, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr21:18179708..18179733,-#_382bd565ee725ff3582ffa4a19459ded | p@chr21:18179708..18179733, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr2:11264766..11264775,-#_382bd565ee725ff3582ffa4a19459ded | p@chr2:11264766..11264775, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr19:49488905..49488920,-#_382bd565ee725ff3582ffa4a19459ded | p@chr19:49488905..49488920, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr9:74995216..74995247,-#_382bd565ee725ff3582ffa4a19459ded | p@chr9:74995216..74995247, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chrX:10129292..10129306,+#_382bd565ee725ff3582ffa4a19459ded | p@chrX:10129292..10129306, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr6:150322254..150322291,-#_382bd565ee725ff3582ffa4a19459ded | p@chr6:150322254..150322291, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr4:167957459..167957470,-#_382bd565ee725ff3582ffa4a19459ded | p@chr4:167957459..167957470, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr21:43934923..43934932,+#_382bd565ee725ff3582ffa4a19459ded | p@chr21:43934923..43934932, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr5:77713534..77713543,+#_382bd565ee725ff3582ffa4a19459ded | p@chr5:77713534..77713543, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr9:94933452..94933457,+#_382bd565ee725ff3582ffa4a19459ded | p@chr9:94933452..94933457, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr2:228216642..228216661,+#_382bd565ee725ff3582ffa4a19459ded | p11@MFF |
| 1.1e-59 | FFCP PHASE2:Hg19::chr20:38442102..38442111,+#_382bd565ee725ff3582ffa4a19459ded | p@chr20:38442102..38442111, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr14:76957782..76957792,+#_382bd565ee725ff3582ffa4a19459ded | p@chr14:76957782..76957792, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr4:167791926..167791930,-#_382bd565ee725ff3582ffa4a19459ded | p@chr4:167791926..167791930, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr8:59970765..59970787,-#_382bd565ee725ff3582ffa4a19459ded | p@chr8:59970765..59970787, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr7:106397597..106397610,+#_382bd565ee725ff3582ffa4a19459ded | p@chr7:106397597..106397610, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr6:31150998..31151005,-#_382bd565ee725ff3582ffa4a19459ded | p@chr6:31150998..31151005, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr3:153038353..153038371,+#_382bd565ee725ff3582ffa4a19459ded | p@chr3:153038353..153038371, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr11:117957610..117957619,-#_382bd565ee725ff3582ffa4a19459ded | p3@LOC100526771 |
| 1.1e-59 | FFCP PHASE1:Hg19::chr6:135486487..135486491,+#_382bd565ee725ff3582ffa4a19459ded | p@chr6:135486487..135486491, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr5:146717844..146717861,+#_382bd565ee725ff3582ffa4a19459ded | p@chr5:146717844..146717861, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr2:74682916..74682923,+#_382bd565ee725ff3582ffa4a19459ded | p@chr2:74682916..74682923, + |
