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{{UBERON
{{UBERON
|id=UBERON:0005910
|alt_id=
|name=transitional epithelium
|namespace=
|def="Multilaminar epithelium, which of consists of more than one layer of epithelial cells, in contact with a basement membrane, that can undergo distention and contraction without losing its integrity and consistency. Examples: urothelium.[FMA]" [FMA:63914, FMA:FMA, Wikipedia:Transitional_epithelium]
|xref=BTO:0003906;;FMA:63914;;MESH:A.10.272.850;;ncithesaurus:Transitional_Epithelium;;SCTID:30117005
|is_a=UBERON:0000486;;UBERON:0005911
|synonym="epithelium transitionale" EXACT [FMA:63914];;"urothelium" NARROW [EMAPA:28089, Wikipedia:Transitional_epithelium]
|comment=see comments for urothelium
|comment=see comments for urothelium
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Multilaminar epithelium, which of consists of more than one layer of epithelial cells, in contact with a basement membrane, that can undergo distention and contraction without losing its integrity and consistency. Examples: urothelium.[FMA]" [FMA:63914, FMA:FMA, Wikipedia:Transitional_epithelium]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0005910
|is_a=UBERON:0000486 ;;UBERON:0005911
|is_obsolete=
|located_in=
|located_in=
|name=transitional epithelium
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=
|synonym="epithelium transitionale" EXACT [FMA:63914];;"urothelium" NARROW [EMAPA:28089, Wikipedia:Transitional_epithelium]
|union_of=
|xref=BTO:0003906;;FMA:63914;;http://upload.wikimedia.org/wikipedia/commons/9/91/Harnblase_Urothel.png;;MESH:A.10.272.850;;ncithesaurus:Transitional_Epithelium;;SCTID:30117005
}}
}}

Latest revision as of 17:55, 12 September 2014

Name:transitional epithelium
Namespace:FANTOM
Definition:"Multilaminar epithelium, which of consists of more than one layer of epithelial cells, in contact with a basement membrane, that can undergo distention and contraction without losing its integrity and consistency. Examples: urothelium.[FMA]" [FMA:63914, FMA:FMA, Wikipedia:Transitional_epithelium]
Xrefs:
links:

BTO:0003906
FMA:63914
[ Harnblase_Urothel.png Harnblase_Urothel.png]
MESH:A.10.272.850
ncithesaurus:Transitional_Epithelium

SCTID:30117005
Synonyms: "epithelium transitionale" EXACT [FMA:63914]
"urothelium" NARROW [EMAPA:28089, Wikipedia:Transitional_epithelium]
Comments:see comments for urothelium

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000486(multilaminar epithelium),UBERON:0005911(endo-epithelium)



Children

is a:UBERON:0000365 (urothelium)
derives from:FF:0102869 (transitional cell carcinoma cell line sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005910 (transitional epithelium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.83e-66FFCP PHASE2:Hg19::chr21:39627877..39627884,+#_01ad9ec0a8eec2ec226dbdfe7e0955a3p@chr21:39627877..39627884, +
2.83e-66FFCP PHASE1:Hg19::chr21:39627877..39627884,+#_01ad9ec0a8eec2ec226dbdfe7e0955a3p@chr21:39627877..39627884, +
3.67e-66FFCP PHASE1:Hg19::chr10:124050511..124050520,+#_2763b8b41bc87f11248e7b553bcbd816p9@BTBD16
3.67e-66FFCP PHASE2:Hg19::chr10:124050511..124050520,+#_2763b8b41bc87f11248e7b553bcbd816p9@BTBD16
7.47e-59FFCP PHASE2:Hg19::chr10:124050568..124050578,+#_3d9dd84f2537054f03afbd5b94600b71p6@BTBD16
7.47e-59FFCP PHASE1:Hg19::chr10:124050568..124050578,+#_3d9dd84f2537054f03afbd5b94600b71p6@BTBD16
1.58e-53FFCP PHASE1:Hg19::chr12:28125967..28125978,-#_59edf439d4301f8892d16514bde0eb99p16@PTHLH
1.58e-53FFCP PHASE2:Hg19::chr12:28125967..28125978,-#_59edf439d4301f8892d16514bde0eb99p16@PTHLH
2.36e-53FFCP PHASE1:Hg19::chr5:61213179..61213189,-#_380f96b132224e9774047783ea8500f2p@chr5:61213179..61213189, -
2.36e-53FFCP PHASE2:Hg19::chr5:61213179..61213189,-#_380f96b132224e9774047783ea8500f2p@chr5:61213179..61213189, -
7.51e-50FFCP PHASE1:Hg19::chrX:102977640..102977644,-#_0da0bf1df99cfe391a2fa4fb3a6f2a73p@chrX:102977640..102977644, -
7.51e-50FFCP PHASE2:Hg19::chrX:102977640..102977644,-#_0da0bf1df99cfe391a2fa4fb3a6f2a73p@chrX:102977640..102977644, -
8.88e-50FFCP PHASE1:Hg19::chr9:27524417..27524425,+#_54e2a6dd0ca490a86cc2f243dd9c8067p4@IFNK
8.88e-50FFCP PHASE2:Hg19::chr9:27524417..27524425,+#_54e2a6dd0ca490a86cc2f243dd9c8067p4@IFNK
1.77e-48FFCP PHASE2:Hg19::chr1:40492754..40492762,+#_42c3e9ef45ae9dbf5158c29d68e34732p@chr1:40492754..40492762, +
1.77e-48FFCP PHASE1:Hg19::chr1:40492754..40492762,+#_42c3e9ef45ae9dbf5158c29d68e34732p@chr1:40492754..40492762, +
1.99e-48FFCP PHASE1:Hg19::chr10:3954276..3954287,+#_0cceaadcd152156757984ed70c0f9027p@chr10:3954276..3954287, +
1.99e-48FFCP PHASE2:Hg19::chr10:3954276..3954287,+#_0cceaadcd152156757984ed70c0f9027p@chr10:3954276..3954287, +
5.31e-45FFCP PHASE2:Hg19::chr12:28125953..28125964,-#_2ca69fbf0e628be76ce7053ea92239cep17@PTHLH
5.31e-45FFCP PHASE1:Hg19::chr12:28125953..28125964,-#_2ca69fbf0e628be76ce7053ea92239cep17@PTHLH
9.76e-45FFCP PHASE2:Hg19::chr8:141728731..141728740,-#_eeabb5ee59e516e43dfb19b396a3c16dp38@PTK2
9.76e-45FFCP PHASE1:Hg19::chr8:141728731..141728740,-#_eeabb5ee59e516e43dfb19b396a3c16dp38@PTK2
3.16e-43FFCP PHASE2:Hg19::chr5:61213127..61213133,-#_cc69465382fa13123aa14452b8331689p@chr5:61213127..61213133, -
3.16e-43FFCP PHASE1:Hg19::chr5:61213127..61213133,-#_cc69465382fa13123aa14452b8331689p@chr5:61213127..61213133, -
6.48e-43FFCP PHASE2:Hg19::chr21:44168074..44168079,+#_7aa9a0c967e8e291d4deef2631f669fdp@chr21:44168074..44168079, +
6.48e-43FFCP PHASE1:Hg19::chr21:44168074..44168079,+#_7aa9a0c967e8e291d4deef2631f669fdp@chr21:44168074..44168079, +
8.63e-43FFCP PHASE1:Hg19::chr4:125341514..125341526,-#_75012e214b7229c0b2d09aa8ed576d4fp@chr4:125341514..125341526, -
8.63e-43FFCP PHASE2:Hg19::chr4:125341514..125341526,-#_75012e214b7229c0b2d09aa8ed576d4fp@chr4:125341514..125341526, -
3.35e-41FFCP PHASE1:Hg19::chr10:127763979..127763984,+#_8fe53dbd37ca33c32d1adcb212566e9ep@chr10:127763979..127763984, +
3.35e-41FFCP PHASE2:Hg19::chr10:127763979..127763984,+#_8fe53dbd37ca33c32d1adcb212566e9ep@chr10:127763979..127763984, +
5.48e-38FFCP PHASE1:Hg19::chr11:127965855..127965866,+#_f9abf6040821467b6ed5f90406a06382p@chr11:127965855..127965866, +
5.48e-38FFCP PHASE2:Hg19::chr11:127965855..127965866,+#_f9abf6040821467b6ed5f90406a06382p@chr11:127965855..127965866, +
7.3e-38FFCP PHASE2:Hg19::chr19:15065111..15065171,-#_fa0fb38e1f5f683932915b8d0060f5a4p@chr19:15065111..15065171, -
7.3e-38FFCP PHASE1:Hg19::chr19:15065111..15065171,-#_fa0fb38e1f5f683932915b8d0060f5a4p@chr19:15065111..15065171, -
2.99e-36FFCP PHASE1:Hg19::chr10:124050535..124050566,+#_7010605380b2aad8d0cdfb13b12bd729p3@BTBD16
2.99e-36FFCP PHASE2:Hg19::chr10:124050535..124050566,+#_7010605380b2aad8d0cdfb13b12bd729p3@BTBD16
8.03e-36FFCP PHASE2:Hg19::chr6:151358048..151358060,+#_c8889e736d843a715b4c0f062a275f88p13@MTHFD1L
8.03e-36FFCP PHASE1:Hg19::chr6:151358048..151358060,+#_c8889e736d843a715b4c0f062a275f88p13@MTHFD1L
2.14e-35FFCP PHASE1:Hg19::chr7:2019948..2019961,-#_c4d7c1d142308803fab3040160968170p@chr7:2019948..2019961, -
2.14e-35FFCP PHASE2:Hg19::chr7:2019948..2019961,-#_c4d7c1d142308803fab3040160968170p@chr7:2019948..2019961, -
4.27e-34FFCP PHASE1:Hg19::chr10:5660248..5660254,-#_d4e6e2239bd229570b4cb5c7f42bb9bcp2@ENST00000427341
4.27e-34FFCP PHASE2:Hg19::chr19:6246612..6246613,+#_d4e6e2239bd229570b4cb5c7f42bb9bcp@chr19:6246612..6246613, +
4.27e-34FFCP PHASE2:Hg19::chr10:5660248..5660254,-#_d4e6e2239bd229570b4cb5c7f42bb9bcp2@ENST00000427341
4.27e-34FFCP PHASE2:Hg19::chr15:101282110..101282113,+#_d4e6e2239bd229570b4cb5c7f42bb9bcp@chr15:101282110..101282113, +
4.27e-34FFCP PHASE1:Hg19::chr15:101282110..101282113,+#_d4e6e2239bd229570b4cb5c7f42bb9bcp@chr15:101282110..101282113, +
4.27e-34FFCP PHASE1:Hg19::chr19:6246612..6246613,+#_d4e6e2239bd229570b4cb5c7f42bb9bcp@chr19:6246612..6246613, +
5.8e-34FFCP PHASE1:Hg19::chr7:150813498..150813509,+#_64b07ba9a04d27435c94fd771a6bde2dp30@AGAP3
5.8e-34FFCP PHASE2:Hg19::chr7:150813498..150813509,+#_64b07ba9a04d27435c94fd771a6bde2dp30@AGAP3
6.31e-34FFCP PHASE1:Hg19::chr2:31560793..31560814,-#_087a746d89085ea0f0e8df8af69c34dep@chr2:31560793..31560814, -
6.31e-34FFCP PHASE2:Hg19::chr2:31560793..31560814,-#_087a746d89085ea0f0e8df8af69c34dep@chr2:31560793..31560814, -
6.72e-34FFCP PHASE2:Hg19::chr13:20934450..20934456,+#_2c1349644b5d9419e9048bbd81ba846dp@chr13:20934450..20934456, +
6.72e-34FFCP PHASE1:Hg19::chr13:20934450..20934456,+#_2c1349644b5d9419e9048bbd81ba846dp@chr13:20934450..20934456, +
8.35e-34FFCP PHASE2:Hg19::chr14:85935018..85935023,-#_1e487aa7d994a605b81a358e83779637p@chr14:85935018..85935023, -
8.35e-34FFCP PHASE1:Hg19::chr14:85935018..85935023,-#_1e487aa7d994a605b81a358e83779637p@chr14:85935018..85935023, -
9.87e-34FFCP PHASE1:Hg19::chr9:113802868..113802878,-#_47c8243cce891059ec2be54d101de20bp@chr9:113802868..113802878, -
9.87e-34FFCP PHASE1:Hg19::chr9:21564382..21564387,-#_47c8243cce891059ec2be54d101de20bp@chr9:21564382..21564387, -
9.87e-34FFCP PHASE2:Hg19::chr9:113802868..113802878,-#_47c8243cce891059ec2be54d101de20bp@chr9:113802868..113802878, -
9.87e-34FFCP PHASE2:Hg19::chr9:21564382..21564387,-#_47c8243cce891059ec2be54d101de20bp@chr9:21564382..21564387, -
1.17e-33FFCP PHASE2:Hg19::chr19:43965689..43965700,-#_80e26c9c8b2635fabe5d57fd84d5043fp@chr19:43965689..43965700, -
1.17e-33FFCP PHASE1:Hg19::chr19:43965689..43965700,-#_80e26c9c8b2635fabe5d57fd84d5043fp@chr19:43965689..43965700, -
2.29e-33FFCP PHASE1:Hg19::chr14:51956090..51956101,+#_22de4483056ddaaf7b5f7207eb1d0cb5p32@FRMD6
2.29e-33FFCP PHASE2:Hg19::chr14:51956090..51956101,+#_22de4483056ddaaf7b5f7207eb1d0cb5p32@FRMD6
6.02e-33FFCP PHASE2:Hg19::chr12:47472684..47472703,-#_b9ffca5c03ed64dc84071ef4781a0823p12@AMIGO2
6.02e-33FFCP PHASE1:Hg19::chr12:47472684..47472703,-#_b9ffca5c03ed64dc84071ef4781a0823p12@AMIGO2
3.76e-32FFCP PHASE1:Hg19::chr21:45020721..45020728,-#_e3f8c60baa109a4e2d5a2d49bfe6e64ep@chr21:45020721..45020728, -
3.76e-32FFCP PHASE2:Hg19::chr21:45020721..45020728,-#_e3f8c60baa109a4e2d5a2d49bfe6e64ep@chr21:45020721..45020728, -
5.17e-32FFCP PHASE1:Hg19::chr8:143814087..143814102,-#_5c7ef8103e7fb58391e185e9dfe1c06fp@chr8:143814087..143814102, -
5.17e-32FFCP PHASE2:Hg19::chr8:143814087..143814102,-#_5c7ef8103e7fb58391e185e9dfe1c06fp@chr8:143814087..143814102, -
1.05e-30FFCP PHASE1:Hg19::chr9:21564331..21564360,-#_827caf6465f005dc9a382e555935021ap@chr9:21564331..21564360, -
1.05e-30FFCP PHASE2:Hg19::chr9:21564331..21564360,-#_827caf6465f005dc9a382e555935021ap@chr9:21564331..21564360, -
1.69e-30FFCP PHASE2:Hg19::chr1:183192299..183192310,+#_92c47b7f012813d034b7a50701d26c10p@chr1:183192299..183192310, +
1.69e-30FFCP PHASE1:Hg19::chr1:183192299..183192310,+#_92c47b7f012813d034b7a50701d26c10p@chr1:183192299..183192310, +
1.86e-30FFCP PHASE2:Hg19::chr2:20402306..20402318,-#_d7d572eb32009ba8930414e672f7a213p@chr2:20402306..20402318, -
1.86e-30FFCP PHASE2:Hg19::chr4:125341479..125341498,-#_d7d572eb32009ba8930414e672f7a213p@chr4:125341479..125341498, -
1.86e-30FFCP PHASE1:Hg19::chr4:125341479..125341498,-#_d7d572eb32009ba8930414e672f7a213p@chr4:125341479..125341498, -
1.86e-30FFCP PHASE1:Hg19::chr2:20402306..20402318,-#_d7d572eb32009ba8930414e672f7a213p@chr2:20402306..20402318, -
2.52e-30FFCP PHASE1:Hg19::chr9:27524537..27524559,+#_61d6ec3230db6f5c8d4bde3c386286fap1@IFNK
2.52e-30FFCP PHASE2:Hg19::chr9:27524537..27524559,+#_61d6ec3230db6f5c8d4bde3c386286fap1@IFNK
2.78e-30FFCP PHASE2:Hg19::chr1:99387558..99387571,-#_900c804e4016522403f9d5b701ddc5e1p@chr1:99387558..99387571, -
2.78e-30FFCP PHASE1:Hg19::chr1:99387558..99387571,-#_900c804e4016522403f9d5b701ddc5e1p@chr1:99387558..99387571, -
2.78e-30FFCP PHASE2:Hg19::chr13:20805611..20805619,-#_900c804e4016522403f9d5b701ddc5e1p6@GJB6
2.78e-30FFCP PHASE1:Hg19::chr13:20805611..20805619,-#_900c804e4016522403f9d5b701ddc5e1p6@GJB6
2.37e-29FFCP PHASE2:Hg19::chr20:56273255..56273292,-#_dd15e7ecbdb5e7d8dd63ba993cf8367cp@chr20:56273255..56273292, -
2.37e-29FFCP PHASE1:Hg19::chr20:56273255..56273292,-#_dd15e7ecbdb5e7d8dd63ba993cf8367cp@chr20:56273255..56273292, -
3.69e-29FFCP PHASE1:Hg19::chr10:124050485..124050505,+#_a2dce45daf2df3817eff58379aaad884p2@BTBD16
3.69e-29FFCP PHASE2:Hg19::chr10:124050485..124050505,+#_a2dce45daf2df3817eff58379aaad884p2@BTBD16
4.92e-28FFCP PHASE2:Hg19::chr1:183212642..183212654,+#_38efc53c629716dca201ca80317f209fp@chr1:183212642..183212654, +
4.92e-28FFCP PHASE1:Hg19::chr1:183212642..183212654,+#_38efc53c629716dca201ca80317f209fp@chr1:183212642..183212654, +
7.78e-28FFCP PHASE1:Hg19::chr5:149877396..149877405,+#_ecaf4c5be99d301d9090309bae6ddf44p19@NDST1
7.78e-28FFCP PHASE2:Hg19::chr5:149877396..149877405,+#_ecaf4c5be99d301d9090309bae6ddf44p19@NDST1
7.78e-28FFCP PHASE1:Hg19::chr6:44096519..44096530,-#_ecaf4c5be99d301d9090309bae6ddf44p@chr6:44096519..44096530, -
7.78e-28FFCP PHASE2:Hg19::chr6:44096519..44096530,-#_ecaf4c5be99d301d9090309bae6ddf44p@chr6:44096519..44096530, -
1.19e-27FFCP PHASE2:Hg19::chr13:20762566..20762577,-#_0f3a09a81b679800d55f084156e50466p@chr13:20762566..20762577, -
1.19e-27FFCP PHASE1:Hg19::chr13:20762566..20762577,-#_0f3a09a81b679800d55f084156e50466p@chr13:20762566..20762577, -
1.67e-27FFCP PHASE1:Hg19::chr3:13921498..13921503,-#_0773149d976b8bb3ee249861a9c66becp6@WNT7A
1.67e-27FFCP PHASE2:Hg19::chr3:13921498..13921503,-#_0773149d976b8bb3ee249861a9c66becp6@WNT7A
2.08e-27FFCP PHASE2:Hg19::chr21:39628993..39628998,+#_9cafdfc6754af5f46254a8ba9ba7f2d9p25@KCNJ15
2.08e-27FFCP PHASE1:Hg19::chr21:39628993..39628998,+#_9cafdfc6754af5f46254a8ba9ba7f2d9p25@KCNJ15
2.34e-27FFCP PHASE1:Hg19::chr5:146263947..146263959,-#_fa86d221ba53578cab9b86a46af71fbdp@chr5:146263947..146263959, -
2.34e-27FFCP PHASE2:Hg19::chr5:146263947..146263959,-#_fa86d221ba53578cab9b86a46af71fbdp@chr5:146263947..146263959, -

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