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{{UBERON
{{UBERON
|id=UBERON:0007625
|alt_id=
|name=pigment epithelium of eye
|namespace=
|def=" epithelial layer of the retina, ciliary body, or iris composed of cells containing pigment granules." [MP:0005200]
|xref=GAID:907;;MESH:A.09.371.670
|is_a=UBERON:0000483
|synonym="eye pigment epithelium" RELATED [MESH:A.09.371.670]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=" epithelial layer of the retina, ciliary body, or iris composed of cells containing pigment granules." [MP:0005200]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0007625
|is_a=UBERON:0000483
|is_obsolete=
|located_in=
|located_in=
|name=pigment epithelium of eye
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000970
|part_of=UBERON:0000970
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=
|synonym="eye pigment epithelium" RELATED [MESH:A.09.371.670]
|union_of=
|xref=GAID:907;;MESH:A.09.371.670
}}
}}

Latest revision as of 18:02, 12 September 2014

Name:pigment epithelium of eye
Namespace:FANTOM
Definition:" epithelial layer of the retina, ciliary body, or iris composed of cells containing pigment granules." [MP:0005200]
Xrefs:
links:

GAID:907

MESH:A.09.371.670
Synonyms: "eye pigment epithelium" RELATED [MESH:A.09.371.670]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000483(epithelium)
part_of:UBERON:0000970(eye)



Children

is a:UBERON:0015808 (eye epithelium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0007625 (pigment epithelium of eye), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.31e-124FFCP PHASE1:Hg19::chr8:53853672..53853682,-#_30b137114a43fc58d50d8212c2f9ae1fp1@BC033145
1.31e-124FFCP PHASE2:Hg19::chr8:53853672..53853682,-#_30b137114a43fc58d50d8212c2f9ae1fp1@BC033145
1.99e-105FFCP PHASE2:Hg19::chr2:45169233..45169244,+#_c1237a000550d9af10f98ceb7f294116p10@SIX3
1.99e-105FFCP PHASE1:Hg19::chr2:45169233..45169244,+#_c1237a000550d9af10f98ceb7f294116p10@SIX3
1.78e-95FFCP PHASE2:Hg19::chr1:29586692..29586705,+#_f7b16951de1ca1168631bf291c670320p7@PTPRU
1.78e-95FFCP PHASE1:Hg19::chr1:29586692..29586705,+#_f7b16951de1ca1168631bf291c670320p7@PTPRU
2.25e-81FFCP PHASE2:Hg19::chr2:45169172..45169177,+#_9db165546a758235d935db0ee2cd3af0p11@SIX3
2.25e-81FFCP PHASE1:Hg19::chr2:45169172..45169177,+#_9db165546a758235d935db0ee2cd3af0p11@SIX3
1.51e-79FFCP PHASE1:Hg19::chr14:87636652..87636657,-#_56e0b1d650e6bbfb20ed565c948dea7dp@chr14:87636652..87636657, -
1.51e-79FFCP PHASE2:Hg19::chr14:87636652..87636657,-#_56e0b1d650e6bbfb20ed565c948dea7dp@chr14:87636652..87636657, -
1.7e-79FFCP PHASE2:Hg19::chr2:45168617..45168631,-#_3cd0dd6caa1c25128ce947876e65eb57p1@ENST00000456467
1.7e-79FFCP PHASE1:Hg19::chr2:45168617..45168631,-#_3cd0dd6caa1c25128ce947876e65eb57p1@ENST00000456467
3.36e-76FFCP PHASE1:Hg19::chr2:45162900..45162914,-#_4ddf84e1b4134ac5a288a3167588c3bdp1@ENST00000432125
3.36e-76FFCP PHASE2:Hg19::chr2:45162900..45162914,-#_4ddf84e1b4134ac5a288a3167588c3bdp1@ENST00000432125
6.65e-72FFCP PHASE1:Hg19::chr8:53853688..53853698,-#_d83340f2c922aa3e2f7b2071abd5990bp3@BC033145
6.65e-72FFCP PHASE2:Hg19::chr7:115723897..115723915,-#_d83340f2c922aa3e2f7b2071abd5990bp@chr7:115723897..115723915, -
6.65e-72FFCP PHASE1:Hg19::chr7:115723897..115723915,-#_d83340f2c922aa3e2f7b2071abd5990bp@chr7:115723897..115723915, -
6.65e-72FFCP PHASE2:Hg19::chr8:53853688..53853698,-#_d83340f2c922aa3e2f7b2071abd5990bp3@BC033145
9.51e-68FFCP PHASE2:Hg19::chr14:60975644..60975673,+#_dc95c88b2f3cade27eec238a391745dfp3@SIX6
9.51e-68FFCP PHASE1:Hg19::chr14:60975644..60975673,+#_dc95c88b2f3cade27eec238a391745dfp3@SIX6
2.26e-64FFCP PHASE2:Hg19::chr2:45165994..45166012,-#_b5253d3c7514b2ed72d0b3dc53516826p1@ENST00000444871
2.26e-64FFCP PHASE1:Hg19::chr2:45165994..45166012,-#_b5253d3c7514b2ed72d0b3dc53516826p1@ENST00000444871
1.48e-63FFCP PHASE2:Hg19::chr11:31827535..31827565,-#_20bab20fc241b39ff1faadbe8090228fp11@PAX6
1.48e-63FFCP PHASE1:Hg19::chr11:31827535..31827565,-#_20bab20fc241b39ff1faadbe8090228fp11@PAX6
2.73e-63FFCP PHASE1:Hg19::chr2:45166504..45166533,-#_4813cbc17d6f7ccb48ec99ba5b7a126bp2@ENST00000437916
2.73e-63FFCP PHASE2:Hg19::chr2:45166504..45166533,-#_4813cbc17d6f7ccb48ec99ba5b7a126bp2@ENST00000437916
2.95e-63FFCP PHASE1:Hg19::chr2:45169179..45169190,+#_a94890275b051a9a03c32c0421cfd041p8@SIX3
2.95e-63FFCP PHASE2:Hg19::chr2:45169179..45169190,+#_a94890275b051a9a03c32c0421cfd041p8@SIX3
4.81e-60FFCP PHASE1:Hg19::chr18:56940663..56940691,-#_482c747471452ca7b07363cb12deaa06p2@RAX
4.81e-60FFCP PHASE2:Hg19::chr18:56940663..56940691,-#_482c747471452ca7b07363cb12deaa06p2@RAX
6.09e-59FFCP PHASE2:Hg19::chr8:99076582..99076599,+#_2b1df5e20e62e5077cf799ddd159016cp6@C8orf47
6.09e-59FFCP PHASE1:Hg19::chr8:99076582..99076599,+#_2b1df5e20e62e5077cf799ddd159016cp6@C8orf47
7.25e-58FFCP PHASE2:Hg19::chr9:73483992..73484003,-#_84291644ea7cf5a08fb5cfdf63b5eaf7p6@TRPM3
7.25e-58FFCP PHASE1:Hg19::chr9:73483992..73484003,-#_84291644ea7cf5a08fb5cfdf63b5eaf7p6@TRPM3
8.62e-58FFCP PHASE2:Hg19::chr2:35680607..35680613,-#_799b0acbe4dcec928588c02895e40f9bp@chr2:35680607..35680613, -
8.62e-58FFCP PHASE1:Hg19::chr2:35680607..35680613,-#_799b0acbe4dcec928588c02895e40f9bp@chr2:35680607..35680613, -
9.98e-58FFCP PHASE2:Hg19::chr7:115723925..115723935,-#_ccd3af0403193705182689d2793f6975p@chr7:115723925..115723935, -
9.98e-58FFCP PHASE1:Hg19::chr7:115723925..115723935,-#_ccd3af0403193705182689d2793f6975p@chr7:115723925..115723935, -
1.15e-57FFCP PHASE1:Hg19::chr7:131803806..131803815,+#_cab760611cb3f40d001e76c018fed369p@chr7:131803806..131803815, +
1.15e-57FFCP PHASE2:Hg19::chr7:131803806..131803815,+#_cab760611cb3f40d001e76c018fed369p@chr7:131803806..131803815, +
1.34e-57FFCP PHASE2:Hg19::chr13:36052762..36052767,-#_75df5f1a34e410ee4fa824e1b0cb0c8dp@chr13:36052762..36052767, -
1.34e-57FFCP PHASE1:Hg19::chr13:36052762..36052767,-#_75df5f1a34e410ee4fa824e1b0cb0c8dp@chr13:36052762..36052767, -
1.55e-57FFCP PHASE1:Hg19::chrX:106198807..106198826,-#_6b1518917e649035690aa9b9d50a5ce6p@chrX:106198807..106198826, -
1.55e-57FFCP PHASE1:Hg19::chr16:58896129..58896134,-#_6b1518917e649035690aa9b9d50a5ce6p@chr16:58896129..58896134, -
1.55e-57FFCP PHASE2:Hg19::chr16:58896129..58896134,-#_6b1518917e649035690aa9b9d50a5ce6p@chr16:58896129..58896134, -
1.55e-57FFCP PHASE2:Hg19::chrX:106198807..106198826,-#_6b1518917e649035690aa9b9d50a5ce6p@chrX:106198807..106198826, -
6.65e-56FFCP PHASE2:Hg19::chr16:82068585..82068600,+#_392512a387a027915dae4c19922a8f17p8@HSD17B2
6.65e-56FFCP PHASE1:Hg19::chr16:82068585..82068600,+#_392512a387a027915dae4c19922a8f17p8@HSD17B2
2.82e-55FFCP PHASE2:Hg19::chr3:173116225..173116242,+#_d2e8bf00606f020fe908ae321b789605p10@NLGN1
2.82e-55FFCP PHASE1:Hg19::chr3:173116225..173116242,+#_d2e8bf00606f020fe908ae321b789605p10@NLGN1
2.16e-54FFCP PHASE2:Hg19::chr1:147150847..147150854,-#_02198aa74088270121f1a76ff5bd6c42p@chr1:147150847..147150854, -
2.16e-54FFCP PHASE1:Hg19::chr13:36052713..36052724,-#_02198aa74088270121f1a76ff5bd6c42p@chr13:36052713..36052724, -
2.16e-54FFCP PHASE1:Hg19::chr1:147150847..147150854,-#_02198aa74088270121f1a76ff5bd6c42p@chr1:147150847..147150854, -
2.16e-54FFCP PHASE2:Hg19::chr13:36052713..36052724,-#_02198aa74088270121f1a76ff5bd6c42p@chr13:36052713..36052724, -
5.8e-53FFCP PHASE2:Hg19::chr3:98705008..98705016,-#_67715885075c016fd1c87342345b0162p@chr3:98705008..98705016, -
5.8e-53FFCP PHASE1:Hg19::chr3:98705008..98705016,-#_67715885075c016fd1c87342345b0162p@chr3:98705008..98705016, -
7.64e-52FFCP PHASE1:Hg19::chr2:45168856..45168867,+#_dba597131999353cb1b8e12eed95e730p7@SIX3
7.64e-52FFCP PHASE2:Hg19::chr2:45168856..45168867,+#_dba597131999353cb1b8e12eed95e730p7@SIX3
2.04e-51FFCP PHASE1:Hg19::chr14:60975858..60975869,+#_9ee255ad4303d7d45677bddc3ccc0814p2@SIX6
2.04e-51FFCP PHASE2:Hg19::chr14:60975858..60975869,+#_9ee255ad4303d7d45677bddc3ccc0814p2@SIX6
9.76e-50FFCP PHASE1:Hg19::chr14:60975871..60975880,+#_cd33120e457715e22b1626e78e9dd54ap4@SIX6
9.76e-50FFCP PHASE2:Hg19::chr14:60975871..60975880,+#_cd33120e457715e22b1626e78e9dd54ap4@SIX6
1.16e-49FFCP PHASE2:Hg19::chr1:203463245..203463294,+#_6da8b0ce17df5216bfa75292704d5295p1@OPTC
1.16e-49FFCP PHASE1:Hg19::chr1:203463245..203463294,+#_6da8b0ce17df5216bfa75292704d5295p1@OPTC
1.92e-49FFCP PHASE1:Hg19::chr13:36050976..36050990,+#_dcbfbaca5dccf1c2d015f57791327a62p8@NBEA
1.92e-49FFCP PHASE2:Hg19::chr13:36050976..36050990,+#_dcbfbaca5dccf1c2d015f57791327a62p8@NBEA
1.39e-48FFCP PHASE1:Hg19::chr5:149682332..149682346,-#_40309fed21af0ecb04c4adb1823c25a4p3@ARSI
1.39e-48FFCP PHASE2:Hg19::chr5:149682332..149682346,-#_40309fed21af0ecb04c4adb1823c25a4p3@ARSI
2.24e-48FFCP PHASE2:Hg19::chr11:31667372..31667383,-#_d57f17294f5c2c12c7d69931292c0ae6p@chr11:31667372..31667383, -
2.24e-48FFCP PHASE1:Hg19::chr11:31667372..31667383,-#_d57f17294f5c2c12c7d69931292c0ae6p@chr11:31667372..31667383, -
3.65e-48FFCP PHASE2:Hg19::chrX:106146585..106146594,-#_bcc6c3e20b6af4eb738e9720d2a60404p2@RIPPLY1
3.65e-48FFCP PHASE1:Hg19::chrX:106146585..106146594,-#_bcc6c3e20b6af4eb738e9720d2a60404p2@RIPPLY1
1.87e-47FFCP PHASE2:Hg19::chr16:82068905..82068918,+#_9a677a04c72286311abb02f603f554ecp7@HSD17B2
1.87e-47FFCP PHASE1:Hg19::chr16:82068905..82068918,+#_9a677a04c72286311abb02f603f554ecp7@HSD17B2
2.36e-46FFCP PHASE2:Hg19::chr14:60975883..60975911,+#_c5e6975bc09c5c63dd5bf1e9487f451ap1@SIX6
2.36e-46FFCP PHASE1:Hg19::chr14:60975883..60975911,+#_c5e6975bc09c5c63dd5bf1e9487f451ap1@SIX6
9.38e-46FFCP PHASE2:Hg19::chr1:26498321..26498327,-#_297c3b05773690bb127d24c3960379abp1@ENST00000448923
9.38e-46FFCP PHASE1:Hg19::chr1:26498321..26498327,-#_297c3b05773690bb127d24c3960379abp1@ENST00000448923
5.37e-45FFCP PHASE1:Hg19::chr3:150690508..150690520,-#_1e4ce5ffc8f69f4350e827e76b0532a6p1@CLRN1
5.37e-45FFCP PHASE2:Hg19::chr3:150690508..150690520,-#_1e4ce5ffc8f69f4350e827e76b0532a6p1@CLRN1
1.33e-44FFCP PHASE2:Hg19::chr8:124692287..124692298,+#_744d236b52cd610813672e1931c84b06p@chr8:124692287..124692298, +
1.33e-44FFCP PHASE1:Hg19::chr8:124692287..124692298,+#_744d236b52cd610813672e1931c84b06p@chr8:124692287..124692298, +
2.68e-44FFCP PHASE1:Hg19::chr22:31536360..31536389,-#_8073b7d351a87be27034560b5c59b99bp4@PLA2G3
2.68e-44FFCP PHASE2:Hg19::chr22:31536360..31536389,-#_8073b7d351a87be27034560b5c59b99bp4@PLA2G3
3.45e-43FFCP PHASE2:Hg19::chr16:68301840..68301845,+#_9398ad822741385b851cb77011337798p@chr16:68301840..68301845, +
3.45e-43FFCP PHASE1:Hg19::chr16:68301840..68301845,+#_9398ad822741385b851cb77011337798p@chr16:68301840..68301845, +
5.76e-43FFCP PHASE2:Hg19::chr13:24190079..24190098,+#_fae4156928245704834f9da0a2415194p@chr13:24190079..24190098, +
5.76e-43FFCP PHASE1:Hg19::chr13:24190079..24190098,+#_fae4156928245704834f9da0a2415194p@chr13:24190079..24190098, +
6.19e-43FFCP PHASE2:Hg19::chr4:77356957..77356973,+#_4d40fe57abadd1259ce8405bb9c29948p20@SHROOM3
6.19e-43FFCP PHASE1:Hg19::chr4:77356957..77356973,+#_4d40fe57abadd1259ce8405bb9c29948p20@SHROOM3
1.77e-42FFCP PHASE1:Hg19::chr7:111032939..111032959,-#_d649c64a540295a7f98f2256ad59505dp3@IMMP2L
1.77e-42FFCP PHASE2:Hg19::chr7:111032939..111032959,-#_d649c64a540295a7f98f2256ad59505dp3@IMMP2L
4.43e-42FFCP PHASE2:Hg19::chr2:45166354..45166379,-#_5dc9873f536fc0048f0e6e243d9119b3p1@ENST00000437916
4.43e-42FFCP PHASE1:Hg19::chr2:45166354..45166379,-#_5dc9873f536fc0048f0e6e243d9119b3p1@ENST00000437916
6.82e-42FFCP PHASE2:Hg19::chr18:56940611..56940660,-#_30e8cda2de1e38f2e2b640541ebc8c95p1@RAX
6.82e-42FFCP PHASE1:Hg19::chr18:56940611..56940660,-#_30e8cda2de1e38f2e2b640541ebc8c95p1@RAX
9.59e-42FFCP PHASE2:Hg19::chr2:45171888..45171968,+#_47a279036b929685f93160ccd582a619p@chr2:45171888..45171968, +
9.59e-42FFCP PHASE1:Hg19::chr2:45171888..45171968,+#_47a279036b929685f93160ccd582a619p@chr2:45171888..45171968, +
1.08e-41FFCP PHASE2:Hg19::chrX:106163626..106163638,+#_f7a54dacba7e2c8763bf64c7208e189ap2@CLDN2
1.08e-41FFCP PHASE1:Hg19::chrX:106163626..106163638,+#_f7a54dacba7e2c8763bf64c7208e189ap2@CLDN2

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