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{{Loading|loadingimage=sprites.gif}}<html><script language="javascript" type="text/javascript" src="/resource_browser/rb_js/flot/jquery.flot.js"></script><script language="javascript" type="text/javascript" src="/resource_browser/rb_js/flot/jquery.flot.axislabels.js"></script>
{{Loading|loadingimage=sprites.gif}}<html><script type="text/javascript" src="/5/sstar/rb_js/jquery-1.7.1.min.js"></script>
<script type="text/javascript" src="/resource_browser/rb_js/custom/convert.js"></script></html>
<script language="javascript" type="text/javascript" src="/5/sstar/rb_js/flot/jquery.flot.js"></script><script language="javascript" type="text/javascript" src="/5/sstar/rb_js/flot/jquery.flot.axislabels.js"></script>
<script type="text/javascript" src="/5/sstar/rb_js/custom/convert.js"></script></html>
<table>
<table>
<tr><th scope="row" align="right" valign="top">[[Property:Symbol|Symbol]]:</th><td>{{#if:{{{Symbol}}}|[[Symbol::{{{Symbol}}}]]|NA}}</td></tr>
<tr><th scope="row" align="right" valign="top">[[Property:Symbol|Symbol]]:</th><td>{{#if:{{{Symbol}}}|[[Symbol::{{{Symbol}}}]]|NA}}</td></tr>
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<div id="ucsc_snap_view" style="width:750px; height:30px; border-style:solid; border-width:1px; border-color:#aaaaaa;  overflow:auto;">
<div id="ucsc_snap_view" style="width:750px; height:30px; border-style:solid; border-width:1px; border-color:#aaaaaa;  overflow:auto;">
Mouse over to see Genome browser image, Click image to go to Genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
{{#ucsc_gb_link:{{#replace:{{#ask:[[Category:FFCP]][[Short description::p1@{{{Symbol}}}]][[FFCP PHASE1:+]]|link=none|headers=hide|limit=1|searchlabel=}}|FFCP_PHASE1:|}}}}
{{#ucsc_gb_link:{{#replace:{{#ask:[[Category:FFCP]][[Short description::p1@{{{Symbol}}}]][[FFCP PHASE1:+]]|link=none|headers=hide|limit=1|searchlabel=}}|FFCP PHASE1:|}}}}
</div><br>
</div><br>
{{Fontsize|3|TSS expression}}
{{Fontsize|3|TSS expression}}
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<html>
<html>
<script type="text/javascript" src="/5/sstar/rb_js/html5button/datatables.min.js"></script>
<script type="text/javascript" src="/5/sstar/rb_js/html5button/datatables.min.js"></script>
<script type="text/javascript" language="javascript" src="/resource_browser/rb_js/datatables/extras/TableTools/media/js/TableTools.min.js"></script>
<script type="text/javascript" language="javascript" src="/5/sstar/rb_js/flot/jquery.flot.min.js"></script>
<script type="text/javascript" language="javascript" src="//cdn.datatables.net/buttons/1.2.1/js/buttons.print.min.js"></script>
<script type="text/javascript" language="javascript" src="/resource_browser/rb_js/flot/jquery.flot.min.js"></script>
<style type="text/css" title="currentStyle">
<style type="text/css" title="currentStyle">
@import "/5/sstar/rb_js/html5button/datatables.css";
@import "/5/sstar/rb_js/html5button/datatables.css";
@import "/resource_browser/rb_js/datatables/extras/TableTools/media/css/TableTools.css";
</style>
</style>


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<script type="text/javascript">
<script type="text/javascript">
$(document).ready(function() {
$(document).ready(function() {
    var orderArr;
    if($('#gene_exptable')[0].rows[1].cells.length>1){
        orderArr = [[1,'desc']];
    } else {
        orderArr = [[0,'asc']];
    }
     var oTable =  $('#gene_exptable').DataTable({
     var oTable =  $('#gene_exptable').DataTable({
        dom: 'Blfrti',
                dom: 'Bfrti',
scrollY: "300px",
scrollY: "300px",
scrollCollapse: true,
scrollCollapse: true,
pageLength: -1,
order: orderArr,
order: [[1,'desc']],
                paging: false,
buttons: ['copyHtml5', 'excelHtml5', 'csvHtml5', 'pdfHtml5'],
buttons: ['copyHtml5', 'excelHtml5', 'csvHtml5', 'pdfHtml5'],
columnDefs: [{ orderSequence: [ "asc", "desc" ], type: "html", targets: [ 0 ] }, { orderSequence: [ "desc", "asc" ], targets: [ "_all" ] } ]
columnDefs: [{ orderSequence: [ "asc", "desc" ], type: "html", targets: [ 0 ] }, { orderSequence: [ "desc", "asc" ], targets: [ "_all" ] } ]
});
});
$('#gene_exptable_wrapper .dataTables_scrollHead th').css("height", "100px").css("vertical-align", "bottom");
$('#gene_exptable_wrapper .dataTables_scrollHead th').css("height", "100px").css("vertical-align", "bottom");


var data = [];
var data = [];
var plotdata = [];
var plotdata = [];
var slist = [];
var slist = [];
// chart checkbox
// chart checkbox
for (var i2=1; i2<oTable.settings().columns.length; i2++){
for (var i2=1; i2<$('#gene_exptable thead th').length; i2++){
key2 = i2-1;
key2 = i2-1;
         $("#gene_exptable_chart_chkbox").append('<input type="checkbox" name="' + key2 +
         $("#gene_exptable_chart_chkbox").append('<input type="checkbox" name="' + key2 +
                               '" checked="checked" id="id' + key2 + '"><label for="id' + key2 + '">'
                               '" checked="checked" id="id' + key2 + '"><label for="id' + key2 + '">'
                                 + $(oTable.settings().columns[i2].title).text() + '</label><br/>');
                                 + $('#gene_exptable thead th:nth-child('+(i2+1)+')').text() + '</label><br/>');
}
}
 
$(oTable.settings().column(i2).title).text()
function collectdata(){
function collectdata(){
data = [];
data = [];
for (i2=1, len2=oTable.settings().columns.length; i2<len2; i2++){
// for (i2=1, len2=oTable.settings().columns.length; i2<len2; i2++){
for (i2=1, len2=$('#gene_exptable thead th').length; i2<len2; i2++){
 
var plots = [];
var plots = [];
for (i1=2, len1=$('#gene_exptable tr').length; i1<len1; i1++) {
for (i1=2, len1=$('#gene_exptable tr').length; i1<len1; i1++) {
     plots.push([i1,$("#gene_exptable tr")[i1].cells[i2].innerHTML]);
     plots.push([i1,$("#gene_exptable tr")[i1].cells[i2].innerHTML]);
}
}
data.push({"label": $(oTable.settings().columns[i2].title).text(), "data": plots});
data.push({"label": $('#gene_exptable thead th:nth-child('+(i2+1)+')').text(), "data": plots});
}
}
slist = [];
slist = [];
Line 144: Line 148:


collectdata();
collectdata();
drawchart();
if($('#gene_exptable')[0].rows[1].cells.length>1){
    drawchart();
}


// re-draw chart event
// re-draw chart event
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     var oTable2 =  $('#tf_chipseq_enrich').DataTable({
     var oTable2 =  $('#tf_chipseq_enrich').DataTable({
         dom: 'Blfrtip',
         dom: 'Blfrtip',
        buttons: ['copyHtml5', 'excelHtml5', 'csvHtml5', 'pdfHtml5'],
scrollY: "300px",
scrollY: "300px",
scrollCollapse: true,
scrollCollapse: true,
Line 244: Line 251:
order: [[4,'asc']],
order: [[4,'asc']],
columnDefs: [{type: "numeric", targets: [2,3,4],
columnDefs: [{type: "numeric", targets: [2,3,4],
        buttons: ['copyHtml5', 'excelHtml5', 'csvHtml5', 'pdfHtml5'],
         render: function ( data, type, row, meta ) {
         render: function ( data, type, row, meta ) {
                   var num =data;               
                   var num =data;               
Line 252: Line 258:
});
});
</script>
</script>
</html>{{#ask:[[tf_chipseq_enrich_entregeneid::{{{GeneID}}}]]|?Tf_chipseq_enrich_values|intro=<div style="width:100%; float:left;"><table id="tf_chipseq_enrich"><html><thead></html><tr><th>Coexpression cluster</th><th>#promoters</th><th>Enrichment</th><th>p-value</th><th>q-value</th></tr><html></thead><tbody></html>|outro=<html></tbody></html></table></div>|link=none|format=template|template=Tf_chipseq_enrichlist_in_entregene|limit=5000|searchlabel=}}
</html>{{#ask:[[tf_chipseq_enrich_entregeneid::{{{GeneID}}}]]|?Tf_chipseq_enrich_values|intro=<div style="width:100%; float:left;"><table id="tf_chipseq_enrich" class="stripe cell-border order-column compact"><html><thead></html><tr><th>Coexpression cluster</th><th>#promoters</th><th>Enrichment</th><th>p-value</th><th>q-value</th></tr><html></thead><tbody></html>|outro=<html></tbody></html></table></div>|link=none|format=template|template=Tf_chipseq_enrichlist_in_entregene|limit=5000|searchlabel=}}
|No analysis results for this cluster
|No analysis results for this cluster
}}
}}

Latest revision as of 14:57, 14 November 2019

Symbol:{{{Symbol}}}
Description:{{{description}}}
Synonyms:
Species:NA
Xrefs:
EntrezGene:{{{GeneID}}}
{{{dbXrefs}}}:[NA ]
Associated motifs:NA
Transcripton Factor?: No

TSS regions



View on UCSC genome browser

Mouse over to see Genome browser image, Click image to go to Genome browser


TSS expression









  • Click each plot point to find sample in table

ENCODE TF ChIP-seq peak enrichment analysis Analyst: Erik Arner <br>Summary: For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><br><br>link to source dataset.<br>data

No analysis results for this cluster

Details<b>Summary:</b>It includes sequences from the international sequence collaboration, Swiss-Prot, and RefSeq. The RefSeq subset of this file is also available as gene2refseq.<br><br>links to source dataset.<br>human <br>mouse

GeneID:{{{GeneID}}}
LocusTag:{{{LocusTag}}}
chromosome:{{{chromosome}}}
map location:
type of gene:{{{type_of_gene}}}
Symbol from
nomenclature authority:		{{{Symbol_from_nomenclature_authority}}}
Full name from
nomenclature authority:		{{{Full_name_from_nomenclature_authority}}}
Nomenclature status:{{{Nomenclature_status}}}
Other designations:
Modification date:Error: Invalid time.







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