FFCP PHASE1:Hg19::chr12:12419905..12419989,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr12:12419905..12419989,- to FFCP PHASE1:Hg19::chr12:12419905..12419989,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4040 | |EntrezGene=4040 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6698 | |HGNC=6698 | ||
|TSSclassifier=strong | |||
|UniProt=F5H0Z3 | |UniProt=F5H0Z3 | ||
|association_with_transcript=0bp_to_ENST00000535731_5end | |||
|cluster_id=chr12:12419905..12419989,- | |||
|description=CAGE_peak_1_at_LRP6_5end | |||
|id=chr12:12419905..12419989,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0003104;9.65e-10;31!UBERON:0001041;3.32e-08;30 | |||
|ontology_enrichment_disease=DOID:0050687!1.48e-19!143;DOID:305!7.14e-13!106;DOID:162!3.38e-11!235;DOID:14566!8.30e-11!239;DOID:3095!2.22e-10!22;DOID:2994!2.22e-10!22 | |||
|ontology_enrichment_disease_v019=DOID:3095;2.91e-10;22!DOID:2994;2.91e-10;22 | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,1.38e-19,143;DOID:305,6.83e-13,106;DOID:162,2.11e-11,235;DOID:14566,5.25e-11,239;DOID:3095,2.15e-10,22;DOID:2994,2.15e-10,22 | |||
|ontology_enrichment_uberon=UBERON:0000481!5.46e-14!347;UBERON:0000475!1.09e-13!365;UBERON:0001007!2.38e-10!155;UBERON:0001555!2.38e-10!155;UBERON:0007026!2.38e-10!155;UBERON:0004921!3.44e-09!129;UBERON:0004185!3.44e-09!129;UBERON:0004119!5.87e-09!169;UBERON:0000925!5.87e-09!169;UBERON:0006595!5.87e-09!169;UBERON:0000468!1.59e-08!659;UBERON:0000483!3.13e-08!309;UBERON:0000924!3.95e-08!173;UBERON:0006601!3.95e-08!173;UBERON:0005409!4.73e-08!35;UBERON:0000119!4.84e-08!312;UBERON:0000073!5.20e-08!94;UBERON:0001016!5.20e-08!94;UBERON:0000466!7.45e-08!126;UBERON:0004111!7.82e-08!241;UBERON:0004121!1.10e-07!169;UBERON:0000160!2.08e-07!27;UBERON:0000077!2.19e-07!130;UBERON:0003104!2.50e-07!238;UBERON:0009142!2.50e-07!238;UBERON:0000477!3.06e-07!286;UBERON:0005156!3.70e-07!59;UBERON:0000990!3.70e-07!59;UBERON:0001017!4.15e-07!82;UBERON:0000062!4.17e-07!511;UBERON:0002100!4.32e-07!216;UBERON:0002323!5.30e-07!46;UBERON:0004458!6.26e-07!49 | |||
|ontology_enrichment_uberon_v019=UBERON:0000922;6.70e-10;49!UBERON:0005409;9.52e-08;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0011216,3.18e-17,223;UBERON:0001007,2.00e-09,145;UBERON:0001555,2.00e-09,145;UBERON:0007026,2.00e-09,145;UBERON:0001016,1.07e-08,89;UBERON:0004921,3.48e-08,118;UBERON:0004119,3.78e-08,160;UBERON:0000925,3.78e-08,160;UBERON:0006595,3.78e-08,160;UBERON:0004111,6.05e-08,240;UBERON:0000483,6.29e-08,306;UBERON:0004121,8.43e-08,171;UBERON:0000924,8.43e-08,171;UBERON:0006601,8.43e-08,171;UBERON:0000119,9.65e-08,309;UBERON:0001017,2.82e-07,81;UBERON:0005156,3.62e-07,59;UBERON:0000990,3.62e-07,59;UBERON:0002323,5.19e-07,46;UBERON:0004458,6.13e-07,49;UBERON:0005409,8.39e-07,25;UBERON:0002553,9.32e-07,61 | |||
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| ||
|short_description=p1@LRP6 | |||
}} | }} |
Latest revision as of 02:52, 17 September 2015
Short description: | p1@LRP6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LRP6_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000535731_5end |
EntrezGene: | LRP6 |
HGNC: | 6698 |
UniProt: | F5H0Z3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
organ system subdivision | 3.18e-17 | 223 |
digestive system | 2.00e-09 | 145 |
digestive tract | 2.00e-09 | 145 |
primitive gut | 2.00e-09 | 145 |
nervous system | 1.07e-08 | 89 |
subdivision of digestive tract | 3.48e-08 | 118 |
endoderm-derived structure | 3.78e-08 | 160 |
endoderm | 3.78e-08 | 160 |
presumptive endoderm | 3.78e-08 | 160 |
anatomical conduit | 6.05e-08 | 240 |
epithelium | 6.29e-08 | 306 |
ectoderm-derived structure | 8.43e-08 | 171 |
ectoderm | 8.43e-08 | 171 |
presumptive ectoderm | 8.43e-08 | 171 |
cell layer | 9.65e-08 | 309 |
central nervous system | 2.82e-07 | 81 |
reproductive structure | 3.62e-07 | 59 |
reproductive system | 3.62e-07 | 59 |
body cavity | 5.19e-07 | 46 |
body cavity or lining | 6.13e-07 | 49 |
gastrointestinal system | 8.39e-07 | 25 |
anatomical cavity | 9.32e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 1.38e-19 | 143 |
carcinoma | 6.83e-13 | 106 |
cancer | 2.11e-11 | 235 |
disease of cellular proliferation | 5.25e-11 | 239 |
germ cell and embryonal cancer | 2.15e-10 | 22 |
germ cell cancer | 2.15e-10 | 22 |