FFCP PHASE1:Hg19::chr17:41622834..41622883,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr17:41622834..41622883,- to FFCP PHASE1:Hg19::chr17:41622834..41622883,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2118 | |EntrezGene=2118 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3493 | |HGNC=3493 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-80bp_to_uc002idy.1_5end | |||
|cluster_id=chr17:41622834..41622883,- | |||
|coexpression_cluster_id=C3633 | |||
|description=CAGE_peak_6_at_ETV4_5end | |||
|id=chr17:41622834..41622883,- | |||
|ontology_enrichment_celltype=CL:0000066!1.79e-32!254;CL:0002321!2.39e-21!248;CL:0000220!1.41e-20!246;CL:0000548!1.62e-13!679;CL:0000004!1.62e-13!679;CL:0000255!1.62e-13!679;CL:0000012!7.12e-13!682;CL:0000076!6.97e-10!62;CL:0000222!1.78e-08!119;CL:0000071!2.48e-08!18;CL:0002546!2.48e-08!18;CL:0000223!7.01e-08!59;CL:0000003!5.15e-07!722;CL:0002078!6.41e-07!44;CL:0002139!8.56e-07!24 | |||
|ontology_enrichment_celltype_v019=CL:0000071;7.40e-10;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,3.07e-24,253;CL:0002321,3.83e-10,250;CL:0000071,8.89e-10,18;CL:0002546,8.89e-10,18;CL:0002078,5.84e-07,45;CL:0000076,6.14e-07,63 | |||
|ontology_enrichment_development_v019=CL:0002546;7.40e-10;18 | |||
|ontology_enrichment_disease=DOID:305!6.25e-12!106;DOID:0050687!2.96e-11!143;DOID:162!1.86e-10!235;DOID:14566!2.38e-10!239 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,1.29e-11,143;DOID:305,1.51e-10,106;DOID:162,1.12e-09,235;DOID:14566,1.21e-09,239 | |||
|ontology_enrichment_uberon=UBERON:0003914!1.64e-13!118;UBERON:0003104!1.37e-12!238;UBERON:0009142!1.37e-12!238;UBERON:0000490!4.20e-12!138;UBERON:0000119!6.26e-12!312;UBERON:0000483!3.10e-11!309;UBERON:0004119!7.00e-11!169;UBERON:0000925!7.00e-11!169;UBERON:0006595!7.00e-11!169;UBERON:0000481!5.25e-10!347;UBERON:0001048!2.08e-09!168;UBERON:0002100!2.28e-09!216;UBERON:0000466!2.40e-09!126;UBERON:0002049!3.45e-09!79;UBERON:0007798!3.45e-09!79;UBERON:0005256!4.23e-09!143;UBERON:0001007!7.31e-09!155;UBERON:0001555!7.31e-09!155;UBERON:0007026!7.31e-09!155;UBERON:0000055!1.19e-08!69;UBERON:0000077!1.80e-08!130;UBERON:0001986!2.48e-08!18;UBERON:0004638!2.48e-08!18;UBERON:0004852!2.48e-08!18;UBERON:0001981!2.75e-08!60;UBERON:0007500!2.75e-08!60;UBERON:0004537!2.75e-08!60;UBERON:0006965!2.75e-08!60;UBERON:0000487!3.22e-08!22;UBERON:0005911!6.55e-08!82;UBERON:0000464!1.09e-07!104;UBERON:0005177!1.59e-07!107;UBERON:0000477!1.99e-07!286;UBERON:0004111!2.55e-07!241;UBERON:0006914!2.80e-07!25;UBERON:0004872!5.20e-07!84;UBERON:0001637!7.05e-07!42;UBERON:0003509!7.05e-07!42;UBERON:0004572!7.05e-07!42 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;7.40e-10;18!UBERON:0001986;7.40e-10;18!UBERON:0004852;7.40e-10;18!UBERON:0000487;2.29e-09;22!UBERON:0006914;8.28e-09;25!UBERON:0000490;1.04e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004638,8.89e-10,18;UBERON:0001986,8.89e-10,18;UBERON:0004852,8.89e-10,18;UBERON:0000487,2.41e-09,22;UBERON:0003914,3.57e-09,117;UBERON:0006914,8.37e-09,25;UBERON:0000490,1.64e-07,148;UBERON:0000119,7.30e-07,309 | |||
|phase1_expression=0,0,0,0,0,1.74467704820074,0,0,0,1.47440361900905,2.79120467188971,2.62129646556207,3.4289707169699,0.247532705920093,0,2.01697543935533,1.80808358407193,2.92124036154949,2.92759679274304,0.861847406537515,1.42800483870977,0,0.572471974262113,0.684372125364421,1.25542639594803,1.45185470921107,1.39571002064908,0.472264687882075,0,0,0,0.919421224478927,0.90361775633475,5.17655614233503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.01210257911091,0.895037932904712,0.361439152384566,0,0,0,0.486634870302636,0.850813354476611,0.665188192387692,0.175669571386252,0,3.64295288292542,3.33705998505986,0,0,0,0,0,0,2.38514888840046,0.860234595106124,4.85996702250632,2.26123176769604,2.09749718104953,4.12677062910101,2.50793959844173,0.516833518338658,0.35576626268671,0,1.20848795132744,3.04108842287405,0.24406205754817,2.20597848207521,3.24056779152704,1.69669483739752,3.14341121676638,1.91439516821648,3.06633274931766,6.6448596169769,4.76324534219059,0,0,0.436094052142534,0,0.506522046658319,0.264818361626438,0,1.06400514659507,0,1.06748995729705,0.98667019366864,0.933633106199299,1.34710672069688,0.980771418680752,1.36221684880438,0.576175924479999,7.26396438684769,0.936480230490962,1.71141546463335,0.896692083310806,2.58355897016283,3.0755859429945,2.52811452064047,2.04154171254893,2.94802361548243,1.54988671763648,0,0.247266929278557,10.0117749813183,2.87447256726495,2.18836948140286,3.1279629967991,1.38532057742091,0.877955241761676,0.30648779579902,0.300476117813194,1.58805056424029,0,0.213557388818567,0,0,0.515262646192195,0,0,0.168776332241266,0.194874010322397,0,0.276149695926898,0.323292113637624,0,0.10075209822764,0,1.73934767846967,1.63647672354501,2.00763216772303,5.12289565744301,1.85541675650079,2.32387885739037,4.14644220061482,5.04641701751257,0,0,0,1.38134921352481,0,0,0,0.337169380156203,0.241011029883482,0.110293972732394,0.217879444092406,0.949082476444386,0,0,1.92373578473195,0,2.80483547606892,0.4115740113314,2.94017422771084,0,0,0,0,0.860919069801795,1.54411029268673,2.74375713521564,4.49607013030478,2.21163739305588,1.29623823221941,2.28065813717227,1.03993478527958,2.88662684050547,1.04337364477569,0.469634776943287,0.144366447761074,0.925971025153221,0.190254152234598,0,0,0,0,0,1.87467667973554,1.00789276919316,1.27597587518148,2.32852159027406,3.19697332365358,4.98397482914775,0,0,0,0,0,0.317489471460845,0.381988425558278,0,1.71072446022705,0.205654985406647,0.600686115687835,0.571652865261156,2.69114602428866,1.74384027533312,1.466765716419,1.29271715757778,0,0,0.26593811658487,0,0.257207374262142,0,1.8649552531127,0.428933980974443,0,1.64648067356154,1.62868092146868,0,0.791951872933429,0.602878754119172,0,1.09970290300263,0,0,0,0,0,0,0.289562613335158,0.205476322550383,0.179060963239896,0.112085143993527,0,0,0,2.54094624222463,1.30139853857622,0,0.502548796003046,0,0,0,0,0,0.500170521059677,0.813795071099207,0.207970861530807,0,0,0.585707074963566,1.20378439891088,0,0,0,0.368738337083406,1.47702144595741,1.17480694477644,0,0,0,0,0.606255142892519,0,1.81434175997808,0,0,0,0,0,0,0,2.00472601943452,0.887808626565635,0.739144404124282,1.55776328755086,0.929683027679674,2.05461064305758,0.601519410909855,0.920809889358963,0.803701137152247,0.728364672026868,0.262248829918848,5.86559496779635,0.616122696835318,7.84349769176855,4.38417673959782,1.47772280450026,0,0.850468526382578,0.215915916102139,1.54227252690289,0.270946437543853,0.501689773854853,2.29388645740534,4.98645605357235,2.68649705666614,0,0,1.02580050046556,0,0,1.03041011647722,0.0915694648183434,0,2.87132768998086,2.60024098414608,0,1.25671933779759,0,0.460511024178389,1.24052915236078,0.322260734604821,0.145016693914229,0.852266274161009,0.356128142586949,1.32227932288782,1.92190067365106,0.638063562472921,0.50578890427775,1.85938219718914,0.94443704049192,0.6970372701606,0.924100740528266,0.532306030317022,0,1.66791797193528,0.143124886741991,0,0,0.190630193923825,1.27948895655667,0.42793898803392,1.59101623962968,1.56989728039846,0.179872457583315,0.823611089208164,0,0.606547444719948,0,0,0,0.731140468893853,3.16950440270266,0.818999468447914,0.989838023675989,2.26016233240486,1.65409603063837,0.66343897524122,0.876901770507525,1.15755106853338,0.655894752046633,0.405820753925408,1.8589409885985,2.81695602532241,1.29070216983646,0.589494246078727,0.35667105148125,1.06428319221179,0,0,9.10735617037716,13.9973888097993,2.4055528181378,3.35151137767894,2.17781969722645,1.03558180854457,1.29151611801369,3.36942951335251,0.886860307073351,2.06751060186264,0,0,0,0,0,0,0,0,1.49553699578462,4.81239927631679,0.490080431962063,1.11481905075431,0,0,0,0.798317485731266,0,1.69338866179106,0,0,0,1.56679895773023,0,0.50787533340481,0.1605880751037,0,0,1.37402137902306,0,0,0,0.781552381608161,1.67043704337145,0,1.08182271390393,0,0,1.49712432326576,0,2.30584991324076,0.11144338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| ||
|short_description=p6@ETV4 | |||
}} | }} |
Latest revision as of 18:26, 24 September 2015
Short description: | p6@ETV4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_ETV4_5end |
Coexpression cluster: | C3633_testicular_large_melanoma_papillary_osteosarcoma_Trabecular_gastric |
Association with transcript: | -80bp_to_uc002idy.1_5end |
EntrezGene: | ETV4 |
HGNC: | 3493 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 3.07e-24 | 253 |
embryonic cell | 3.83e-10 | 250 |
blood vessel endothelial cell | 8.89e-10 | 18 |
embryonic blood vessel endothelial progenitor cell | 8.89e-10 | 18 |
meso-epithelial cell | 5.84e-07 | 45 |
squamous epithelial cell | 6.14e-07 | 63 |
Ontology term | p-value | n |
---|---|---|
blood vessel endothelium | 8.89e-10 | 18 |
endothelium | 8.89e-10 | 18 |
cardiovascular system endothelium | 8.89e-10 | 18 |
simple squamous epithelium | 2.41e-09 | 22 |
epithelial tube | 3.57e-09 | 117 |
squamous epithelium | 8.37e-09 | 25 |
unilaminar epithelium | 1.64e-07 | 148 |
cell layer | 7.30e-07 | 309 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 1.29e-11 | 143 |
carcinoma | 1.51e-10 | 106 |
cancer | 1.12e-09 | 235 |
disease of cellular proliferation | 1.21e-09 | 239 |