FFCP PHASE1:Hg19::chr1:164528942..164528964,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:164528942..164528964,+ to FFCP PHASE1:Hg19::chr1:164528942..164528964,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5087 | |EntrezGene=5087 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8632 | |HGNC=8632 | ||
|TSSclassifier=strong | |||
|UniProt=P40424 | |UniProt=P40424 | ||
|association_with_transcript=70bp_to_ENST00000420696_5end | |||
|cluster_id=chr1:164528942..164528964,+ | |||
|coexpression_cluster_id=C2537 | |||
|description=CAGE_peak_11_at_PBX1_5end | |||
|id=chr1:164528942..164528964,+ | |||
|ontology_enrichment_celltype=CL:0000133!7.27e-08!59;CL:0002319!4.23e-07!25 | |||
|ontology_enrichment_celltype_v019=CL:0002322;3.01e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,8.23e-08,5;CL:0000047,3.51e-07,8 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.92e-21!82;UBERON:0005743!2.02e-21!86;UBERON:0000073!2.87e-21!94;UBERON:0001016!2.87e-21!94;UBERON:0002346!1.94e-19!90;UBERON:0003075!3.87e-18!86;UBERON:0007284!3.87e-18!86;UBERON:0007023!1.16e-17!115;UBERON:0000924!2.13e-17!173;UBERON:0006601!2.13e-17!173;UBERON:0004121!3.00e-16!169;UBERON:0000955!1.61e-15!69;UBERON:0006238!1.61e-15!69;UBERON:0001049!2.65e-14!57;UBERON:0005068!2.65e-14!57;UBERON:0006241!2.65e-14!57;UBERON:0007135!2.65e-14!57;UBERON:0003056!2.38e-13!61;UBERON:0002616!3.00e-13!59;UBERON:0000153!5.64e-13!129;UBERON:0007811!5.64e-13!129;UBERON:0000033!1.21e-12!123;UBERON:0001893!4.34e-12!34;UBERON:0001869!5.58e-12!32;UBERON:0000481!1.12e-11!347;UBERON:0003080!1.48e-11!42;UBERON:0002791!1.53e-11!33;UBERON:0000475!2.58e-11!365;UBERON:0002780!2.91e-11!41;UBERON:0001890!2.91e-11!41;UBERON:0006240!2.91e-11!41;UBERON:0000468!3.15e-11!659;UBERON:0002020!6.14e-11!34;UBERON:0003528!6.14e-11!34;UBERON:0000064!1.78e-10!219;UBERON:0000956!3.21e-10!25;UBERON:0000203!3.21e-10!25;UBERON:0000062!2.76e-09!511;UBERON:0002619!7.93e-09!22;UBERON:0000477!8.34e-09!286;UBERON:0000119!8.77e-09!312;UBERON:0000483!9.25e-09!309;UBERON:0000922!3.53e-08!612;UBERON:0001950!5.45e-08!20;UBERON:0000025!3.84e-07!194 | |||
|ontology_enrichment_uberon_v019=UBERON:0000922;5.99e-12;49!UBERON:0001869;1.93e-08;32!UBERON:0001893;1.12e-07;34!UBERON:0002791;1.57e-07;32!UBERON:0000956;2.44e-07;25!UBERON:0000203;2.44e-07;25!UBERON:0000160;4.36e-07;17!UBERON:0003528;9.32e-07;34!UBERON:0002020;9.32e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0011216,5.61e-10,223;UBERON:0001016,2.05e-09,89;UBERON:0001869,3.06e-09,32;UBERON:0001017,5.87e-09,81;UBERON:0002346,7.24e-09,86;UBERON:0004121,1.18e-08,171;UBERON:0000924,1.18e-08,171;UBERON:0006601,1.18e-08,171;UBERON:0001893,1.84e-08,34;UBERON:0003075,4.34e-08,82;UBERON:0007284,4.34e-08,82;UBERON:0002791,4.96e-08,32;UBERON:0003056,1.34e-07,61;UBERON:0010314,2.01e-07,132;UBERON:0003528,2.40e-07,34;UBERON:0002020,2.40e-07,34;UBERON:0000956,2.51e-07,25;UBERON:0000203,2.51e-07,25;UBERON:0000160,6.23e-07,17;UBERON:0007023,9.14e-07,114 | |||
|phase1_expression=0.181678379270557,0.214100523890983,0.140954404095971,0,0.446961094427288,0,0,0,0.261185628199839,0,0,0.436882744260345,0.527533956456907,0.247532705920093,0,0,0,0,0,0.861847406537515,0.612002073732759,2.19418305034661,2.86235987131057,0.684372125364421,1.25542639594803,0,0,0,0,0,0.309632246632152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.87613732627923,6.70700859703636,0.767175371061182,0.361439152384566,0,0.579386075843295,0.795285947051099,0.486634870302636,1.79616152611729,0.886917589850256,2.3715392137144,4.38779902917337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0,0,0,0,0,0,0,0.0892997282840798,0,0,0,0,0,0,0,0,0,0.886413581652058,0.132409180813219,1.14734648299525,0.709336764396714,5.04609840128076,0,0.24666754841716,3.7345324247972,0.269421344139376,0.490385709340376,0.302714855289863,0,0.937285727335186,0,0,0.298897361103602,0.117434498643765,0,0,0,0,0.206651562351531,0,0,0,0,0,0.500474079487857,0,0,0,0,0.113432183160021,0,0.213557388818567,0.211931901159562,0,0.515262646192195,0,0.744467425326359,0,0.68205903612839,0.757301322732344,0.552299391853796,1.77810662500693,0,0.403008392910561,0.169560592310488,0,0,0,1.58565817968474,1.98794652482228,1.39432731443422,1.96956004529204,2.27088765788066,0.36497735907583,0,0.643240938192885,0,0,0,0.354920400119532,0.168584690078102,0,0.220587945464788,0.217879444092406,0.237270619111097,0.134831308160164,0.196221465125346,0,0,0,2.4694440679884,0,0,0,0,0,0.491953754172454,1.02940686179115,0,0,0,0.0925884451585296,0.325808305310325,1.03993478527958,0,0.927443239800615,0.939269553886573,0,0,0,1.58040879591855,0.858486162094873,0,0,0,0,0,0,0,0,0,7.8826118063351,0.176096868026452,0,0.144119953416961,0.12624243342638,0.063497894292169,0,0,0,0,0,0,0,0.43596006883328,0.1466765716419,0.129271715757778,0,0,1.06375246633948,0,0,0,0,1.00084595560703,0,0.823240336780769,0.65147236858747,1.77695974371273,0,0.904318131178758,0,0.499864955910285,0,0,0,0,0,0,0,0,0.179060963239896,0,0,0,0,2.03275699377971,2.60279707715243,3.09315525111078,2.68026024534958,5.74144876487847,0,0,0,1.10422342547226,0,0,0.623912584592421,0.356857977594324,0.473107245101804,0.117141414992713,0,0,0,0,0,1.39013783148933,0.391602314925481,0,0,0,0,0.303127571446259,1.66435439510497,0.30239029332968,0.248107807818777,0.460385919864187,0.561320188866147,0.256278298511402,1.53512174720011,0.160853921143607,0,0,0.355123450626254,0.164254312027618,0,0.116210378459959,0.725156697549733,0,0,0.918515585316854,0.182091168006717,0.262248829918848,0,0,0,0,0,0,0.340187410553031,0.431831832204279,0,0,0,0,0,0,0,0,0,0.328014645699706,0.325378394664303,0.309123034943167,0.27470839445503,0.165018999841176,0,0,0,0.193341436584244,0,0,0.137836572484531,0.214840489736547,0.435050081742686,0,0.356128142586949,0,0,0,0,0.464845549297286,0,0,0.924100740528266,1.06461206063404,0.869932992075073,0.55597265731176,0.572499546967965,0.372158369359667,0.632758849437452,0.571890581771475,0,1.71175595213568,0.95460974377781,0,0.359744915166629,1.09814811894422,2.12062324222236,0.808729926293264,0,0,0.48763373908959,0.243713489631284,0,0.682499557039929,2.68670320712054,1.13008116620243,0,0,0,0,1.31178950409327,0,0,0.281695602532241,0.286822704408103,0.0982490410131212,0,0.354761064070598,0.422215270595328,0.658589785919804,1.13841952129715,3.84928192269481,0,0,0,0.564862804660675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.540911356951966,0.33307196799782,0,0,0.73254089635947,0,0,0,0,1.48482340416319,0,0.994147647766298,0.703347082052564,0,0,0.63337622438398,0.796991953004279,1.10513566212459,0,0.409074730008619,0,0.311039587661807,0.179736702294654,0.895105873378046,0,2.76201535783414,0,0,0.969332746095218,1.39152147242777,1.99613798001194,3.38556089410803,0.699679999969566,0.724999575434793,0.1137934482855,0,0.472775363535873,0,0.291604613383254,1.56262495439963,0.885741385813839,1.92954301800653,0,0.221158519862449,0.886642856860642,0.438770794307945,0.435753854075961,0.139423744278603,16.0826040272936,1.13942055847001,0,0,0.434589487688032,0,0.183195186803725,0.533034776018635,0,0,0.332423363800313,0,0,0,0,0.158936578980379,0,0,0.141353071433941,0.216388639742091,0,0.707660516026713,3.05515072466813,0,0,0,0.606610196826093,0.802577647298789,0.702793337176017,0,0.391329237864179,0,1.18375320854817,0,3.67287313956588,2.52746318513952,0,0.518440956986236,0,0,0,0,0.569219092059585,0,0,0,0,2.27144668714639,1.0319161948297,0.0967563312890851,0.146178634172371,0,0.872901148395775,0,1.58186518546373,0,0,1.01297273529406,3.51992488922645,0,4.69596588426576,0.39961921916426,0.144090417154106,0.114536596165916,0.171594997861965,0,0,0,0.271808412147228,0.104602846312333,0.305994652908965,3.75635766871975,0,0.410716136675979,0,0,0,2.51354161145029,1.14580212005842,0.717873024576814,0.599037001496973,0.8584520962731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| 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| ||
|short_description=p11@PBX1 | |||
}} | }} |
Latest revision as of 09:12, 18 September 2015
Short description: | p11@PBX1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_11_at_PBX1_5end |
Coexpression cluster: | C2537_uterus_occipital_cervix_rectum_mesothelioma_Cardiac_parietal |
Association with transcript: | 70bp_to_ENST00000420696_5end |
EntrezGene: | PBX1 |
HGNC: | 8632 |
UniProt: | P40424 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 8.23e-08 | 5 |
neuronal stem cell | 3.51e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
organ system subdivision | 5.61e-10 | 223 |
nervous system | 2.05e-09 | 89 |
cerebral hemisphere | 3.06e-09 | 32 |
central nervous system | 5.87e-09 | 81 |
neurectoderm | 7.24e-09 | 86 |
ectoderm-derived structure | 1.18e-08 | 171 |
ectoderm | 1.18e-08 | 171 |
presumptive ectoderm | 1.18e-08 | 171 |
telencephalon | 1.84e-08 | 34 |
neural plate | 4.34e-08 | 82 |
presumptive neural plate | 4.34e-08 | 82 |
regional part of telencephalon | 4.96e-08 | 32 |
pre-chordal neural plate | 1.34e-07 | 61 |
structure with developmental contribution from neural crest | 2.01e-07 | 132 |
brain grey matter | 2.40e-07 | 34 |
gray matter | 2.40e-07 | 34 |
cerebral cortex | 2.51e-07 | 25 |
pallium | 2.51e-07 | 25 |
intestine | 6.23e-07 | 17 |
adult organism | 9.14e-07 | 114 |