FFCP PHASE1:Hg19::chr2:216237349..216237362,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr2:216237349..216237362,- to FFCP PHASE1:Hg19::chr2:216237349..216237362,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2335 | |EntrezGene=2335 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3778 | |HGNC=3778 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-144bp_to_ENST00000461974_5end | |||
|cluster_id=chr2:216237349..216237362,- | |||
|coexpression_cluster_id=C79 | |||
|description=CAGE_peak_67_at_FN1_5end | |||
|id=chr2:216237349..216237362,- | |||
|ontology_enrichment_celltype=CL:0000057!7.84e-21!75;CL:0000055!1.41e-16!180;CL:0002620!4.97e-12!23;CL:0002334!5.56e-11!12;CL:0002371!1.18e-10!591;CL:0000144!2.55e-10!625;CL:0000048!3.75e-10!430;CL:0000723!7.67e-10!436;CL:0000034!2.39e-09!444;CL:0000548!9.46e-09!679;CL:0000004!9.46e-09!679;CL:0000255!9.46e-09!679;CL:0000012!1.75e-08!682;CL:0002320!4.63e-07!365;CL:0000134!4.83e-07!358 | |||
|ontology_enrichment_celltype_v019=CL:0000680;1.71e-11;7!CL:0002541;4.55e-11;3!CL:0000034;1.56e-10;69!CL:0000594;2.86e-10;3!CL:0000723;3.12e-10;61!CL:0002570;9.35e-10;8!CL:0000134;2.13e-09;55!CL:0000048;4.90e-08;58 | |||
|ontology_enrichment_celltype_v019_2=CL:0002541,6.19e-11,3;CL:0000594,2.48e-10,3;CL:0002570,1.13e-09,8;CL:0000057,1.27e-07,76;CL:0000048,9.12e-07,427 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!3.06e-09!14 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002097!1.30e-08!40;UBERON:0002199!1.73e-08!45;UBERON:0002416!1.73e-08!45;UBERON:0003102!2.45e-08!95;UBERON:0002384!2.12e-07!375;UBERON:0003688!5.16e-07!6;UBERON:0002358!5.16e-07!6;UBERON:0003684!5.16e-07!6;UBERON:0001178!5.16e-07!6 | |||
|ontology_enrichment_uberon_v019=UBERON:0003124;4.55e-11;3!UBERON:0000920;4.55e-11;3!UBERON:0001013;2.36e-10;14!UBERON:0003688;3.44e-09;6!UBERON:0002358;3.44e-09;6!UBERON:0003684;3.44e-09;6!UBERON:0001178;3.44e-09;6!UBERON:0005406;1.23e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000920,6.19e-11,3;UBERON:0001013,2.50e-10,14;UBERON:0003688,4.19e-09,6;UBERON:0002358,4.19e-09,6;UBERON:0003684,4.19e-09,6;UBERON:0001178,4.19e-09,6;UBERON:0005406,1.01e-07,2;UBERON:0002384,6.57e-07,371 | |||
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|phase1_expression=0.908391896352783,0.642301571672949,1.40954404095971,2.00146596706261,0.446961094427288,3.48935409640147,0,0,0,0,0,0,0.527533956456907,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0.376627918784408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,0,0.361439152384566,0,0,1.5905718941022,6.32625331393427,0.189069634328136,1.10864698731282,1.40535657109002,0,0,0,0,0,0,0,0,0,0,0,0,0,0.838998872419812,0,0,0.258416759169329,0,0,0,0,0,0,0.81014194788176,0,0,0,0,0,0.183201743930407,0,0,0,2.98183171017191,0.633152558322899,6.3556406790345,5.73673241497627,0,0,0,0.49333509683432,0,0.538842688278752,1.14423332179421,0.151357427644931,0.576175924479999,0,0.312160076830321,0,0.896692083310806,0.23486899728753,0.161872944368132,0,0.408308342509787,0.122834317311768,0.206651562351531,0,0,0,0,0.336672227908132,0.250237039743928,0,0,0.919463387397059,0.300476117813194,0.340296549480063,2.87023417102179,0.85422955527427,1.05965950579781,3.90118424909723,0.721367704669072,4.12224864073007,0.558350568994769,4.38818463827292,0.292311015483596,5.3011092591264,0.644349290496095,0,4.26011511019937,0.201504196455281,0.339121184620975,0.193260853163297,0.818238361772504,0,0,0,0.116193942869518,0,0,0,0,1.28648187638577,0,0.928735856063958,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,1.26755034821831,0.982827216677626,0,0,0.122988438543114,0.171567810298526,0,0,0,0.0925884451585296,0,0,0,0,0.117408694235822,0,0.462985512576611,0,0,0,0,0,0,0,0.503946384596579,0.283550194484773,0.0895585227028483,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0.112131084345361,0.43596006883328,0,1.16344544182,0,0.845302752556,0,0,0.257207374262142,1.41849132023278,0.266422179016099,0,0,0,0.65147236858747,0,0,0.301439377059586,0,0.099972991182057,0,0,0,0.718874566474748,0,0,1.15825045334063,3.08214483825575,0.895304816199478,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0.500170521059677,0.271265023699736,2.49565033836969,2.49800584316026,0.473107245101804,1.40569697991256,0,0,0,0,0.184369168541703,0.347534457872331,0,0,0,0,0,0,0,0.30239029332968,0.992431231275107,5.83155498494637,0.841980283299221,0.640695746278505,2.04682899626681,3.05622450172854,1.48418066444991,0.616838775210622,0.355123450626254,0.164254312027618,0.519254429183621,0.348631135379878,0.120859449591622,0.601519410909855,0,0.114814448164607,0.182091168006717,0.262248829918848,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6068392984416,0,0.616194468458578,0.767518373630648,0.551346289938122,1.93356440762893,2.0302337147992,1.27839941124151,0,0.165284915360978,0,3.06270509987002,0,0,5.03699754929024,0,0,0,0.869932992075073,0,0.429374660225974,0,0.632758849437452,0.762520775695299,0,0,0,0,0.719489830333259,0.823611089208164,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0,0,0.578775534266688,0.655894752046633,0,0,0,0.286822704408103,0.0982490410131212,0,0.354761064070598,0.211107635297664,0.658589785919804,0,0,0,0,0,0,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111443384277478,0.284136146806413,0,0,0.614321404198464,0,0,2.44879151050393,0,0,0.19924798825107,0,0,0,0,9.02014804219242,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227884111694002,0,0,0.108647371922008,3.82801391678303,1.09917112082235,15.4580085045404,0,0,0,0,0,0,0,0,0.210998064528027,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394584402849391,0,0,0,0,0,0,0,0,0,0,0,0,0,0.174118413160805,0,0,0,0,0,0,0,0,0.137041924646751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.429765441419957,0,0,0,0,0,0,0,0.134366944973453,1.08089965062721,0,0.0787831823072236,0,0.337017719270924,0.196854963029498,0,0,0,0,0,0,0,0,0,0,0,0.104909176269996,0,0.179287339332845,0,0,0,0,0,0,0.326587360109409,0,0,3.57814845749386,0,0.146552233678082,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151649117541648,0.285465333544967,0,0,0,1.34329322598187,2.10341978862502,1.66441758450784,1.51522404220071,1.50940741051545,0,0.228840068396924,2.11723293268535,0.777186002913902,0.443565449968902,0.955780602982214,0.449803112163605,0.931577741257556,0.829412415681711,2.92425886013794,4.69570555630561,0.150257608997218,0.380805212168795,0,1.45478927362048,0.644463342254931,1.39210127963548,1.99047944349308,0,1.37358282073117,1.01024846629776,0,0,0,0,0,0,0,0.179088841081487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184105950251841,0,0,0,0,2.20172318598255,0,0.33946505990805,0.850299680406731,0.247871528518004,0,0.954013051960256,0,0,0.352675943690684,0.3062454773532,0,0,0,0,0,0,0,0,0,0,0,0,0.762764190934334,0,0,0,1.81534561833168,0,0,0.49131575253029,0,0,0,0,0,0,0,0,1.05522746615772,0,0,0,0,0,0.177404740325278,0,0.342976018874837,0.0679697329768317,0,0.118193840883968,0.111231401892069,0,0.157115589916002,0,0,0,0,0,0,0,0,0,0.414432328326074,0,0,0,0.118332000730565,0.0852134047591577,0,0.22910686854405,0,0.9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|short_description=p67@FN1 | |||
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Latest revision as of 02:02, 20 September 2015
Short description: | p67@FN1 |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_67_at_FN1_5end |
Coexpression cluster: | C79_chorionic_Chondrocyte_Cardiac_Smooth_Fibroblast_Preadipocyte_Mesenchymal |
Association with transcript: | -144bp_to_ENST00000461974_5end |
EntrezGene: | FN1 |
HGNC: | 3778 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chorionic membrane mesenchymal stem cell | 6.19e-11 | 3 |
skeletal muscle satellite cell | 2.48e-10 | 3 |
mesenchymal stem cell of adipose | 1.13e-09 | 8 |
fibroblast | 1.27e-07 | 76 |
multi fate stem cell | 9.12e-07 | 427 |
Ontology term | p-value | n |
---|---|---|
egg chorion | 6.19e-11 | 3 |
adipose tissue | 2.50e-10 | 14 |
omentum | 4.19e-09 | 6 |
peritoneum | 4.19e-09 | 6 |
abdominal cavity | 4.19e-09 | 6 |
visceral peritoneum | 4.19e-09 | 6 |
perirenal fat | 1.01e-07 | 2 |
connective tissue | 6.57e-07 | 371 |