FFCP PHASE1:Hg19::chr3:50306572..50306675,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr3:50306572..50306675,+ to FFCP PHASE1:Hg19::chr3:50306572..50306675,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7869 | |EntrezGene=7869 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=10724 | |HGNC=10724 | ||
|TSSclassifier=strong | |||
|UniProt=F5H6N7 | |UniProt=F5H6N7 | ||
|association_with_transcript=0bp_to_ENST00000414456,ENST00000426144,ENST00000454314,uc010hli.2_5end | |||
|cluster_id=chr3:50306572..50306675,+ | |||
|coexpression_cluster_id=C34 | |||
|description=CAGE_peak_1_at_SEMA3B_5end | |||
|id=chr3:50306572..50306675,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.36e-15!254 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,5.89e-15,253 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!8.65e-15!106;DOID:0050687!5.59e-10!143;DOID:299!7.31e-07!25 | |||
|ontology_enrichment_disease_v019=DOID:299;9.36e-07;25 | |||
|ontology_enrichment_disease_v019_2=DOID:305,8.75e-13,106;DOID:0050687,6.85e-08,143;DOID:299,8.59e-07,25 | |||
|ontology_enrichment_uberon=UBERON:0000062!2.18e-21!511;UBERON:0000481!1.56e-19!347;UBERON:0004119!8.64e-19!169;UBERON:0000925!8.64e-19!169;UBERON:0006595!8.64e-19!169;UBERON:0001007!1.75e-16!155;UBERON:0001555!1.75e-16!155;UBERON:0007026!1.75e-16!155;UBERON:0000064!6.63e-15!219;UBERON:0000475!1.55e-14!365;UBERON:0004921!2.30e-12!129;UBERON:0004185!2.30e-12!129;UBERON:0000468!4.36e-12!659;UBERON:0000077!8.66e-12!130;UBERON:0000467!1.33e-10!625;UBERON:0000480!2.24e-10!626;UBERON:0003104!2.21e-09!238;UBERON:0009142!2.21e-09!238;UBERON:0005177!1.14e-08!107;UBERON:0000922!5.03e-08!612;UBERON:0000466!7.01e-08!126;UBERON:0000063!1.13e-07!97;UBERON:0007023!1.22e-07!115;UBERON:0002050!2.71e-07!605;UBERON:0005423!2.71e-07!605;UBERON:0000033!2.76e-07!123;UBERON:0001048!3.19e-07!168;UBERON:0005156!3.52e-07!59;UBERON:0000990!3.52e-07!59;UBERON:0000923!3.95e-07!604;UBERON:0005291!3.95e-07!604;UBERON:0006598!3.95e-07!604;UBERON:0002532!3.95e-07!604;UBERON:0001737!5.64e-07!9;UBERON:0001004!6.49e-07!72;UBERON:0000477!7.22e-07!286;UBERON:0004121!7.72e-07!169;UBERON:0000464!9.17e-07!104 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;2.95e-07;9!UBERON:0001557;2.95e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,2.09e-18,160;UBERON:0000925,2.09e-18,160;UBERON:0006595,2.09e-18,160;UBERON:0001007,7.47e-16,145;UBERON:0001555,7.47e-16,145;UBERON:0007026,7.47e-16,145;UBERON:0011216,1.13e-13,223;UBERON:0004921,1.10e-11,118;UBERON:0007023,1.25e-07,114;UBERON:0001008,1.29e-07,48;UBERON:0005177,1.50e-07,101;UBERON:0006554,1.75e-07,47;UBERON:0001737,3.07e-07,9;UBERON:0001004,5.02e-07,74 | |||
|phase1_expression=0.181678379270557,0,0.422863212287913,1.0007329835313,1.34088328328186,2.61701557230111,0,0,0,6.38908234903923,53.0328887659045,5.89791704751465,4.22027165165526,27.1048312982502,24.1920084281379,0,0,0,0,3.93987385845721,10.8120366359454,8.14982275843028,4.29353980696585,3.55873505189499,4.5195350254129,0,0,0,0,0,2.16742572642506,6.43594857135249,1.204823675113,6.65557218300218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.42159801053347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.79007586580942,27.1079364288425,8.02140657017423,43.0194161313646,1.5905718941022,19.9520296824081,6.80650683581289,7.09534071880205,6.93894806975696,29.9942082889762,18.2147644146271,17.4268688108682,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,17.0076680335588,5.4666914686485,1.13967460498122,3.17782033951725,33.2730480068624,2.83734705758686,5.60677600142307,1.06748995729705,7.4000264525148,0.622422070799533,0.134710672069688,0.163461903113459,0.605429710579726,0,1.64025002283658,0.312160076830321,0,0.597794722207204,0.117434498643765,0.323745888736263,0,5.71631679513701,7.24722472139431,6.61284999524899,21.384051431077,22.9958244229058,4.55080680969013,2.15585442544872,5.21841953257605,3.25308151667107,3.3247693858102,14.4862614890677,9.50112166976961,19.0802334811378,0.226864366320042,27.6260038960847,34.8098543774265,8.26534414522291,22.5068322063302,8.96557004374418,69.0476647322286,54.5322389051558,23.2911338492947,8.37958244386308,29.5347515865614,16.2007821610447,77.5901072730297,55.7365060251085,10.3774661174469,10.8518779078712,7.73043412653187,8.72787585890671,4.01526433544605,4.75697453905422,2.25300606146525,7.32021840077966,5.90868013587612,6.81266297364197,1.09493207722749,1.56449532329816,5.78916844373597,0,3.71494342425583,8.66255378003503,62.7026040211173,61.364827188429,58.5656802616861,68.9337329577462,62.5314004545206,56.2331367293299,58.6516190496715,59.0626610027292,55.0188434433338,0,0,26.3407367252096,22.0513067078313,0,0,10.0434284135839,0,32.8379130910113,5.83330555014987,1.42675371031213,1.1240175325762,0.804231779293047,7.22189872236531,3.58389135841357,0,5.77325368101093,8.81071077810584,3.63966952131047,0,0,0,33.1885847142896,24.0376125386564,0,0,0,1.87467667973554,14.4464630251019,6.37987937590739,3.85101647622248,4.06887513919547,4.60059214998253,0,0,0.207328115540772,0,0,0.253991577168676,1.14596527667483,0,1.71072446022705,2.36503233217644,54.662436527593,0.285826432630578,0.336393253036082,0,0.2933531432838,1.55126058909333,10.7296933755565,0,11.4353390131494,14.5610411675913,6.94459910507784,7.09245660116391,5.59486575933809,9.57952557509589,6.51145926469732,3.29296134712308,0,8.88479871856365,0,18.0863626235752,3.48613383440118,32.4912221341685,0,0,0,2.15662369942424,13.7834323000937,4.27910715122155,1.01346914667305,8.42452922456572,1.61154866915906,0.112085143993527,0,0,0,1.01637849688985,1.30139853857622,1.54657762555539,0.167516265334349,1.91381625495949,0,0,0,18.403723757871,21.5073324055661,4.6115054028955,19.7572318454267,39.0759485465784,32.0135902518887,47.3251316570561,2.10662269809403,0,3.10419213877515,6.64225598535437,5.34670588770939,20.1569985565952,7.63624514104688,1.37257369524342,0,0,0,8.79069957194152,28.2940247167845,19.3529787730995,1.98486246255021,0.61384789315225,0.280660094433074,4.22859192543813,4.60536524160033,1.44768529029247,14.8418066444991,0,0.710246901252508,0.657017248110473,0,0.232420756919918,32.632051389738,2.80709058424599,21.4548704220638,20.3221573251354,6.00900854422166,25.962634161966,41.9615640003893,44.2068034979341,28.2365916903668,17.5367069583913,15.0938829316812,0,0,0,0,32.5135725052623,53.1791160286145,40.270451141116,116.350641250021,17.4622308683299,0,0,69.7544340316579,57.4025629974485,25.0541363891513,387.22812177214,75.0869611510416,68.4003754341674,2.87132768998086,0.650060246036521,3.21367859688319,0.48335359146061,0.770243085573222,0.767518373630648,0.551346289938122,1.82614416276065,3.48040065394148,0.681813019328807,0.890320356467374,3.30569830721956,1.92190067365106,21.0560975616064,4.6532579193553,1.85938219718914,30.2219852957414,4.1822236209636,1.23213432070436,0,4.34966496037536,0.74129687641568,0.286249773483982,0.744316738719335,2.53103539774981,3.8126038784765,21.495414470152,10.698474700848,3.18203247925937,0,9.53324025191568,9.05972198128981,4.83030849617314,0.606547444719948,0,0.421258456238981,12.1908434772398,0.487426979262569,2.11300293513511,6.55199574758332,5.79762271010222,1.13008116620243,1.65409603063837,1.32687795048244,0,7.52408194546694,7.21484227251296,0.405820753925408,0.30982349809975,0.281695602532241,2.00775893085672,6.18968958382663,0.7133421029625,5.67617702512956,58.8990302480483,45.4426952284665,1.13841952129715,1.39973888097993,3.65644028356946,4.69211592875051,11.9780083347455,383.918419567705,6.45758059006845,8.42357378338128,5.32116184244011,3.905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|phase1_expression=0.181678379270557,0,0.422863212287913,1.0007329835313,1.34088328328186,2.61701557230111,0,0,0,6.38908234903923,53.0328887659045,5.89791704751465,4.22027165165526,27.1048312982502,24.1920084281379,0,0,0,0,3.93987385845721,10.8120366359454,8.14982275843028,4.29353980696585,3.55873505189499,4.5195350254129,0,0,0,0,0,2.16742572642506,6.43594857135249,1.204823675113,6.65557218300218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.42159801053347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.79007586580942,27.1079364288425,8.02140657017423,43.0194161313646,1.5905718941022,19.9520296824081,6.80650683581289,7.09534071880205,6.93894806975696,29.9942082889762,18.2147644146271,17.4268688108682,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,17.0076680335588,5.4666914686485,1.13967460498122,3.17782033951725,33.2730480068624,2.83734705758686,5.60677600142307,1.06748995729705,7.4000264525148,0.622422070799533,0.134710672069688,0.163461903113459,0.605429710579726,0,1.64025002283658,0.312160076830321,0,0.597794722207204,0.117434498643765,0.323745888736263,0,5.71631679513701,7.24722472139431,6.61284999524899,21.384051431077,22.9958244229058,4.55080680969013,2.15585442544872,5.21841953257605,3.25308151667107,3.3247693858102,14.4862614890677,9.50112166976961,19.0802334811378,0.226864366320042,27.6260038960847,34.8098543774265,8.26534414522291,22.5068322063302,8.96557004374418,69.0476647322286,54.5322389051558,23.2911338492947,8.37958244386308,29.5347515865614,16.2007821610447,77.5901072730297,55.7365060251085,10.3774661174469,10.8518779078712,7.73043412653187,8.72787585890671,4.01526433544605,4.75697453905422,2.25300606146525,7.32021840077966,5.90868013587612,6.81266297364197,1.09493207722749,1.56449532329816,5.78916844373597,0,3.71494342425583,8.66255378003503,62.7026040211173,61.364827188429,58.5656802616861,68.9337329577462,62.5314004545206,56.2331367293299,58.6516190496715,59.0626610027292,55.0188434433338,0,0,26.3407367252096,22.0513067078313,0,0,10.0434284135839,0,32.8379130910113,5.83330555014987,1.42675371031213,1.1240175325762,0.804231779293047,7.22189872236531,3.58389135841357,0,5.77325368101093,8.81071077810584,3.63966952131047,0,0,0,33.1885847142896,24.0376125386564,0,0,0,1.87467667973554,14.4464630251019,6.37987937590739,3.85101647622248,4.06887513919547,4.60059214998253,0,0,0.207328115540772,0,0,0.253991577168676,1.14596527667483,0,1.71072446022705,2.36503233217644,54.662436527593,0.285826432630578,0.336393253036082,0,0.2933531432838,1.55126058909333,10.7296933755565,0,11.4353390131494,14.5610411675913,6.94459910507784,7.09245660116391,5.59486575933809,9.57952557509589,6.51145926469732,3.29296134712308,0,8.88479871856365,0,18.0863626235752,3.48613383440118,32.4912221341685,0,0,0,2.15662369942424,13.7834323000937,4.27910715122155,1.01346914667305,8.42452922456572,1.61154866915906,0.112085143993527,0,0,0,1.01637849688985,1.30139853857622,1.54657762555539,0.167516265334349,1.91381625495949,0,0,0,18.403723757871,21.5073324055661,4.6115054028955,19.7572318454267,39.0759485465784,32.0135902518887,47.3251316570561,2.10662269809403,0,3.10419213877515,6.64225598535437,5.34670588770939,20.1569985565952,7.63624514104688,1.37257369524342,0,0,0,8.79069957194152,28.2940247167845,19.3529787730995,1.98486246255021,0.61384789315225,0.280660094433074,4.22859192543813,4.60536524160033,1.44768529029247,14.8418066444991,0,0.710246901252508,0.657017248110473,0,0.232420756919918,32.632051389738,2.80709058424599,21.4548704220638,20.3221573251354,6.00900854422166,25.962634161966,41.9615640003893,44.2068034979341,28.2365916903668,17.5367069583913,15.0938829316812,0,0,0,0,32.5135725052623,53.1791160286145,40.270451141116,116.350641250021,17.4622308683299,0,0,69.7544340316579,57.4025629974485,25.0541363891513,387.22812177214,75.0869611510416,68.4003754341674,2.87132768998086,0.650060246036521,3.21367859688319,0.48335359146061,0.770243085573222,0.767518373630648,0.551346289938122,1.82614416276065,3.48040065394148,0.681813019328807,0.890320356467374,3.30569830721956,1.92190067365106,21.0560975616064,4.6532579193553,1.85938219718914,30.2219852957414,4.1822236209636,1.23213432070436,0,4.34966496037536,0.74129687641568,0.286249773483982,0.744316738719335,2.53103539774981,3.8126038784765,21.495414470152,10.698474700848,3.18203247925937,0,9.53324025191568,9.05972198128981,4.83030849617314,0.606547444719948,0,0.421258456238981,12.1908434772398,0.487426979262569,2.11300293513511,6.55199574758332,5.79762271010222,1.13008116620243,1.65409603063837,1.32687795048244,0,7.52408194546694,7.21484227251296,0.405820753925408,0.30982349809975,0.281695602532241,2.00775893085672,6.18968958382663,0.7133421029625,5.67617702512956,58.8990302480483,45.4426952284665,1.13841952129715,1.39973888097993,3.65644028356946,4.69211592875051,11.9780083347455,383.918419567705,6.45758059006845,8.42357378338128,5.32116184244011,3.905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| ||
|short_description=p1@SEMA3B | |||
}} | }} |
Latest revision as of 19:20, 18 September 2015
Short description: | p1@SEMA3B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SEMA3B_5end |
Coexpression cluster: | C34_placenta_chorionic_choriocarcinoma_mesothelioma_Wilms_Smooth_bile |
Association with transcript: | 0bp_to_ENST00000414456, ENST00000426144, ENST00000454314, uc010hli.2_5end |
EntrezGene: | SEMA3B |
HGNC: | 10724 |
UniProt: | F5H6N7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 5.89e-15 | 253 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 2.09e-18 | 160 |
endoderm | 2.09e-18 | 160 |
presumptive endoderm | 2.09e-18 | 160 |
digestive system | 7.47e-16 | 145 |
digestive tract | 7.47e-16 | 145 |
primitive gut | 7.47e-16 | 145 |
organ system subdivision | 1.13e-13 | 223 |
subdivision of digestive tract | 1.10e-11 | 118 |
adult organism | 1.25e-07 | 114 |
renal system | 1.29e-07 | 48 |
trunk region element | 1.50e-07 | 101 |
urinary system structure | 1.75e-07 | 47 |
larynx | 3.07e-07 | 9 |
respiratory system | 5.02e-07 | 74 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 8.75e-13 | 106 |
cell type cancer | 6.85e-08 | 143 |
adenocarcinoma | 8.59e-07 | 25 |