Personal tools

FFCP PHASE1:Hg19::chr4:21699357..21699368,-: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
 
(10 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{FFCP
{{FFCP
|id=chr4:21699357..21699368,-
|DHSsupport=supported 
|short_description=p18@KCNIP4
|DPIdataset=robust
|description=CAGE_peak_18_at_KCNIP4_5end
|association_with_transcript=28bp_to_ENST00000382148_5end
|EntrezGene=80333
|EntrezGene=80333
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding
|HGNC=30083
|HGNC=30083
|TSSclassifier=strong
|UniProt=Q3YAB9
|UniProt=Q3YAB9
|association_with_transcript=28bp_to_ENST00000382148_5end
|cluster_id=chr4:21699357..21699368,-
|coexpression_cluster_id=C135
|description=CAGE_peak_18_at_KCNIP4_5end
|id=chr4:21699357..21699368,-
|ontology_enrichment_celltype=
|ontology_enrichment_celltype_v019=CL:0000123;9.07e-18;2!CL:0000242;9.07e-18;2!CL:0002253;1.17e-17;2!CL:0002563;1.63e-09;4!CL:0000333;5.35e-08;5!CL:0000312;6.55e-08;5!CL:0000240;8.48e-07;6!CL:0000311;8.48e-07;6!CL:0000079;8.48e-07;6!CL:0000237;8.48e-07;6
|ontology_enrichment_celltype_v019_2=CL:0000242,9.07e-18,2;CL:0002253,1.07e-17,2;CL:0002563,1.57e-09,4;CL:0000312,6.55e-08,5;CL:0000240,8.48e-07,6;CL:0000311,8.48e-07,6;CL:0000079,8.48e-07,6;CL:0000237,8.48e-07,6;CL:0000036,8.48e-07,6;CL:0000357,8.48e-07,6;CL:0000114,8.48e-07,6
|ontology_enrichment_development_v019=UBERON:0006215;2.07e-12;3!CL:0000357;8.48e-07;6!CL:0000114;8.48e-07;6
|ontology_enrichment_disease=
|ontology_enrichment_disease_v019=DOID:169;7.17e-07;6
|ontology_enrichment_disease_v019_2=DOID:169,7.17e-07,6
|ontology_enrichment_uberon=UBERON:0003076!3.55e-37!15;UBERON:0003057!3.55e-37!15;UBERON:0001049!1.11e-31!57;UBERON:0005068!1.11e-31!57;UBERON:0006241!1.11e-31!57;UBERON:0007135!1.11e-31!57;UBERON:0004733!9.09e-25!12;UBERON:0002028!9.09e-25!12;UBERON:0007277!9.09e-25!12;UBERON:0005743!1.37e-23!86;UBERON:0000073!3.88e-23!94;UBERON:0001016!3.88e-23!94;UBERON:0004732!9.10e-23!13;UBERON:0001017!1.41e-22!82;UBERON:0002616!9.97e-22!59;UBERON:0003075!1.11e-21!86;UBERON:0007284!1.11e-21!86;UBERON:0002346!1.67e-20!90;UBERON:0007023!3.36e-20!115;UBERON:0002680!3.73e-19!9;UBERON:0001895!3.73e-19!9;UBERON:0010092!3.73e-19!9;UBERON:0000955!1.00e-17!69;UBERON:0006238!1.00e-17!69;UBERON:0002240!1.96e-15!3;UBERON:0000988!5.98e-15!3;UBERON:0002298!9.69e-15!8;UBERON:0004121!3.88e-13!169;UBERON:0000924!1.04e-12!173;UBERON:0006601!1.04e-12!173;UBERON:0002020!1.06e-11!34;UBERON:0003528!1.06e-11!34;UBERON:0000033!9.31e-11!123;UBERON:0002148!1.61e-10!2;UBERON:0009662!1.61e-10!2;UBERON:0000153!4.59e-10!129;UBERON:0007811!4.59e-10!129;UBERON:0002791!1.10e-09!33;UBERON:0001871!1.31e-09!7;UBERON:0002780!1.85e-09!41;UBERON:0001890!1.85e-09!41;UBERON:0006240!1.85e-09!41;UBERON:0005174!1.89e-09!5;UBERON:0001137!1.89e-09!5;UBERON:0001893!2.29e-09!34;UBERON:0003080!3.37e-09!42;UBERON:0002308!1.52e-08!9;UBERON:0000125!1.52e-08!9;UBERON:0002037!3.84e-08!6;UBERON:0006215!3.84e-08!6;UBERON:0001869!5.42e-08!32;UBERON:0000025!7.89e-08!194;UBERON:0004111!1.58e-07!241;UBERON:0000483!2.02e-07!309;UBERON:0000119!2.73e-07!312;UBERON:0006331!2.74e-07!3;UBERON:0001896!2.83e-07!3;UBERON:0005290!2.83e-07!3;UBERON:0010096!2.83e-07!3;UBERON:0003056!3.66e-07!61;UBERON:0002619!6.14e-07!22
|ontology_enrichment_uberon_v019=UBERON:0001052;1.07e-33;4!UBERON:0004907;3.32e-27;5!UBERON:0000007;1.17e-17;2!UBERON:0000059;5.58e-13;11!UBERON:0001242;1.63e-09;4!UBERON:0003296;1.63e-09;4!UBERON:0010133;1.63e-09;4!UBERON:0001262;1.63e-09;4!UBERON:0004786;1.63e-09;4!UBERON:0004808;1.63e-09;4!UBERON:0001277;1.63e-09;4!UBERON:0000160;2.56e-08;17!UBERON:0000013;5.35e-08;5!UBERON:0002410;5.35e-08;5!UBERON:0002037;7.58e-07;6
|ontology_enrichment_uberon_v019_2=UBERON:0001052,9.88e-34,4;UBERON:0004907,3.11e-27,5;UBERON:0000007,1.27e-17,2;UBERON:0000059,5.42e-13,11;UBERON:0001242,1.57e-09,4;UBERON:0001262,1.57e-09,4;UBERON:0004786,1.57e-09,4;UBERON:0004808,1.57e-09,4;UBERON:0001277,1.57e-09,4;UBERON:0003296,1.70e-09,4;UBERON:0010133,1.70e-09,4;UBERON:0000160,2.51e-08,17;UBERON:0000013,5.35e-08,5;UBERON:0002410,5.35e-08,5;UBERON:0001046,6.15e-08,19;UBERON:0002037,7.58e-07,6;UBERON:0006215,7.58e-07,6
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560677600142307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0.211125408127993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,6.10326945268333,0.331737779793674,0.591095237907095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.29833183845255,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0.61214552326098,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795229689809303,0,0.160753148465019,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0.26446520348538,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0.110929051536852,0.372578417648301,0,0,0.303298235083296,0,0,0,3.91286777249228,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.19072286440104,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206686796501184,0,0,0,0,0,0,0,0,0,1.13831095675649,0,0,0,0.203909198930495,0,0,0.111231401892069,0.078493092850514,0,0,4.56579360254748,0,0,0.357382720883282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118920090777569,0,0,0,0,0.874238242015829,0,0.980593287015622,0,0.196308467114945,0.594092800654172,0.4226557275834,0,0,0,0,0,0,0,0.730336388246517,0,0,0,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0717222053926763,0,0.0814032686109745,0,0,0,0,0,0,0,0,0
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560677600142307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0.211125408127993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,6.10326945268333,0.331737779793674,0.591095237907095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.29833183845255,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0.61214552326098,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795229689809303,0,0.160753148465019,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0.26446520348538,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0.110929051536852,0.372578417648301,0,0,0.303298235083296,0,0,0,3.91286777249228,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.19072286440104,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206686796501184,0,0,0,0,0,0,0,0,0,1.13831095675649,0,0,0,0.203909198930495,0,0,0.111231401892069,0.078493092850514,0,0,4.56579360254748,0,0,0.357382720883282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118920090777569,0,0,0,0,0.874238242015829,0,0.980593287015622,0,0.196308467114945,0.594092800654172,0.4226557275834,0,0,0,0,0,0,0,0.730336388246517,0,0,0,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0717222053926763,0,0.0814032686109745,0,0,0,0,0,0,0,0,0
|short_description=p18@KCNIP4
}}
}}

Latest revision as of 08:12, 17 September 2015

Short description:p18@KCNIP4
Species:Human (Homo sapiens)
DPI dataset: Robust
TSS-like-by-RIKEN-classifier(Yes/No): Yes
DHS support(Yes/No): Yes
Description: CAGE_peak_18_at_KCNIP4_5end
Coexpression cluster:C135_neuroblastoma_retinoblastoma_carcinoid_choriocarcinoma_testicular_acute_rectum
Association with transcript: 28bp_to_ENST00000382148_5end
EntrezGene:KCNIP4
HGNC: 30083
UniProt: Q3YAB9
Genome view:ZENBU


View on UCSC genome browser

Mouse over to see Genome browser image, Click image to go to Genome browser


CAGE Expression



0
2
4
6
8
10




  • Click each plot point to find sample in table


Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=FFCP_PHASE1:Hg19::chr4:21699357..21699368,-&oldid=4065451"