FFCP PHASE1:Hg19::chr4:57897472..57897512,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr4:57897472..57897512,- to FFCP PHASE1:Hg19::chr4:57897472..57897512,-: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr4:57897472..57897512,- | |||
|coexpression_cluster_id=C772 | |||
|description=CAGE_peak_at_chr4:57897472..57897512,- | |||
|id=chr4:57897472..57897512,- | |||
|ontology_enrichment_celltype=CL:0000055!1.34e-16!180;CL:0000222!4.45e-13!119;CL:0000183!2.85e-11!59;CL:0000192!6.67e-11!42;CL:0000514!6.67e-11!42;CL:0000680!2.29e-10!57;CL:0000056!2.29e-10!57;CL:0000355!2.29e-10!57;CL:0000359!2.72e-10!32;CL:0000187!6.64e-10!54;CL:0000057!1.56e-09!75;CL:0000393!8.26e-08!60;CL:0000211!8.26e-08!60;CL:0000220!9.40e-07!246 | |||
|ontology_enrichment_celltype_v019=CL:0000359;2.49e-09;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,1.08e-11,121;CL:0000359,1.74e-09,32;CL:0000057,4.07e-09,76;CL:0000192,4.84e-09,43;CL:0000514,4.84e-09,43;CL:0000680,8.55e-08,58;CL:0000056,8.55e-08,58;CL:0000355,8.55e-08,58;CL:0000187,1.32e-07,55 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;2.66e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,2.41e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0002049!4.23e-16!79;UBERON:0007798!4.23e-16!79;UBERON:0004872!5.28e-14!84;UBERON:0000477!7.91e-14!286;UBERON:0000055!8.26e-14!69;UBERON:0003914!4.84e-13!118;UBERON:0001009!6.32e-13!113;UBERON:0004535!1.37e-12!110;UBERON:0001981!1.78e-12!60;UBERON:0007500!1.78e-12!60;UBERON:0004537!1.78e-12!60;UBERON:0006965!1.78e-12!60;UBERON:0001637!1.96e-11!42;UBERON:0003509!1.96e-11!42;UBERON:0004572!1.96e-11!42;UBERON:0004111!2.98e-11!241;UBERON:0000119!4.77e-11!312;UBERON:0000483!7.19e-11!309;UBERON:0000475!1.65e-10!365;UBERON:0002385!2.05e-10!63;UBERON:0001015!2.05e-10!63;UBERON:0000383!2.05e-10!63;UBERON:0001134!2.62e-10!61;UBERON:0002036!2.62e-10!61;UBERON:0003082!2.62e-10!61;UBERON:0004573!5.07e-10!33;UBERON:0004571!5.07e-10!33;UBERON:0000481!1.13e-09!347;UBERON:0000486!1.46e-09!82;UBERON:0000468!3.70e-09!659;UBERON:0000467!9.44e-09!625;UBERON:0004290!1.08e-08!70;UBERON:0000480!1.48e-08!626;UBERON:0000025!2.37e-08!194;UBERON:0000914!2.82e-08!83;UBERON:0002329!2.82e-08!83;UBERON:0003077!2.82e-08!83;UBERON:0003059!2.82e-08!83;UBERON:0007282!2.82e-08!83;UBERON:0009618!2.82e-08!83;UBERON:0007285!2.82e-08!83;UBERON:0005256!5.36e-08!143;UBERON:0007100!6.42e-08!27;UBERON:0003103!9.32e-08!69;UBERON:0000948!9.66e-08!24;UBERON:0005498!9.66e-08!24;UBERON:0004140!9.66e-08!24;UBERON:0009881!9.66e-08!24;UBERON:0004141!9.66e-08!24;UBERON:0003084!9.66e-08!24;UBERON:0007005!9.66e-08!24;UBERON:0004139!9.66e-08!24;UBERON:0004291!9.66e-08!24;UBERON:0002100!2.63e-07!216;UBERON:0000490!3.40e-07!138 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;4.96e-09;33!UBERON:0004571;4.96e-09;33!UBERON:0001637;7.72e-09;42!UBERON:0003509;7.72e-09;42!UBERON:0004572;7.72e-09;42!UBERON:0007100;2.39e-08;25!UBERON:0000948;2.48e-08;22!UBERON:0000055;9.01e-07;65 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002049,8.72e-16,78;UBERON:0007798,8.72e-16,78;UBERON:0001009,4.50e-14,112;UBERON:0004872,6.71e-14,83;UBERON:0004535,6.91e-14,109;UBERON:0000055,2.61e-13,68;UBERON:0003914,2.65e-13,117;UBERON:0007500,3.07e-11,59;UBERON:0001981,3.07e-11,59;UBERON:0004537,3.07e-11,59;UBERON:0006965,3.07e-11,59;UBERON:0001637,6.65e-11,42;UBERON:0003509,6.65e-11,42;UBERON:0004572,6.65e-11,42;UBERON:0004573,5.61e-10,33;UBERON:0004571,5.61e-10,33;UBERON:0000948,4.75e-09,24;UBERON:0005498,4.75e-09,24;UBERON:0004140,4.75e-09,24;UBERON:0009881,4.75e-09,24;UBERON:0004141,4.75e-09,24;UBERON:0003084,4.75e-09,24;UBERON:0007005,4.75e-09,24;UBERON:0004139,4.75e-09,24;UBERON:0004291,4.75e-09,24;UBERON:0007100,6.12e-09,27;UBERON:0003103,1.50e-08,68;UBERON:0001134,7.25e-08,62;UBERON:0002036,7.25e-08,62;UBERON:0003082,7.25e-08,62;UBERON:0002385,7.30e-08,64;UBERON:0001015,7.30e-08,64;UBERON:0000383,7.30e-08,64;UBERON:0007503,1.01e-07,78;UBERON:0004111,3.42e-07,240;UBERON:0003104,5.59e-07,160;UBERON:0009142,5.59e-07,160;UBERON:0000486,7.25e-07,83 | |||
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| ||
|short_description=p@chr4:57897472..57897512,- | |||
}} | }} |
Latest revision as of 05:52, 30 July 2015
Short description: | p@chr4:57897472..57897512, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:57897472..57897512, - |
Coexpression cluster: | C772_Smooth_Fibroblast_Adipocyte_Preadipocyte_hepatic_Renal_Osteoblast |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 1.08e-11 | 121 |
vascular associated smooth muscle cell | 1.74e-09 | 32 |
fibroblast | 4.07e-09 | 76 |
smooth muscle cell | 4.84e-09 | 43 |
smooth muscle myoblast | 4.84e-09 | 43 |
muscle precursor cell | 8.55e-08 | 58 |
myoblast | 8.55e-08 | 58 |
multi-potent skeletal muscle stem cell | 8.55e-08 | 58 |
muscle cell | 1.32e-07 | 55 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 2.41e-07 | 14 |