FFCP PHASE1:Hg19::chr7:45953080..45953100,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr7:45953080..45953100,- to FFCP PHASE1:Hg19::chr7:45953080..45953100,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3486 | |EntrezGene=3486 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=5472 | |HGNC=5472 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-404bp_to_S56205_5end | |||
|cluster_id=chr7:45953080..45953100,- | |||
|coexpression_cluster_id=C223 | |||
|description=CAGE_peak_7_at_IGFBP3_5end | |||
|id=chr7:45953080..45953100,- | |||
|ontology_enrichment_celltype=CL:0000055!8.32e-15!180;CL:0000057!1.81e-11!75;CL:0000359!3.05e-08!32;CL:0002334!6.04e-08!12;CL:0002620!2.14e-07!23;CL:0000680!5.45e-07!57;CL:0000056!5.45e-07!57;CL:0000355!5.45e-07!57;CL:0000192!6.93e-07!42;CL:0000514!6.93e-07!42 | |||
|ontology_enrichment_celltype_v019=CL:0002620;2.78e-12;23!CL:0000153;3.43e-11;9!CL:0000447;3.43e-11;9!CL:0000138;3.41e-09;6!CL:0002334;1.12e-08;12!CL:0000327;1.08e-07;15!CL:0000499;1.19e-07;28 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.75e-15,76;CL:0002620,2.66e-12,23;CL:0000153,3.19e-11,9;CL:0000447,3.19e-11,9;CL:0000058,3.08e-09,6;CL:0000138,3.08e-09,6;CL:0002334,1.02e-08,12;CL:0000048,3.78e-08,427;CL:0000723,8.89e-08,433;CL:0000327,1.18e-07,15;CL:0000499,1.57e-07,28;CL:0000034,2.66e-07,441 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;9.62e-11;5!DOID:450;9.62e-11;5!DOID:66;9.62e-11;5!DOID:423;9.62e-11;5!DOID:0080000;9.62e-11;5!DOID:11722;9.62e-11;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,1.01e-10,5;DOID:450,1.01e-10,5;DOID:66,1.01e-10,5;DOID:423,1.01e-10,5;DOID:0080000,1.01e-10,5;DOID:11722,1.01e-10,5 | |||
|ontology_enrichment_uberon=UBERON:0004872!1.71e-09!84;UBERON:0005631!6.96e-08!14;UBERON:0000158!6.96e-08!14;UBERON:0001637!7.74e-08!42;UBERON:0003509!7.74e-08!42;UBERON:0004572!7.74e-08!42;UBERON:0004573!1.29e-07!33;UBERON:0004571!1.29e-07!33;UBERON:0004923!8.34e-07!57;UBERON:0003124!9.18e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;4.59e-13;9!UBERON:0000042;4.59e-13;9!UBERON:0003688;2.84e-11;6!UBERON:0002358;2.84e-11;6!UBERON:0003684;2.84e-11;6!UBERON:0001178;2.84e-11;6!UBERON:0002097;3.87e-07;41!UBERON:0004573;5.04e-07;33!UBERON:0004571;5.04e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,2.66e-11,6;UBERON:0002358,2.66e-11,6;UBERON:0003684,2.66e-11,6;UBERON:0001178,2.66e-11,6;UBERON:0004457,2.21e-09,12;UBERON:0000042,2.21e-09,12;UBERON:0002199,3.45e-09,46;UBERON:0002416,3.45e-09,46;UBERON:0002097,1.70e-08,41;UBERON:0005631,9.86e-08,14;UBERON:0000158,9.86e-08,14;UBERON:0004573,2.47e-07,33;UBERON:0004571,2.47e-07,33;UBERON:0004923,5.18e-07,66;UBERON:0003124,6.50e-07,7;UBERON:0004872,9.39e-07,83 | |||
|phase1_expression=3.27021082687002,3.21150785836475,2.67813367782345,11.0080628188443,2.23480547213644,3.48935409640147,0,1.26343974685366,0.783556884599516,1.47440361900905,0,0.218441372130172,0,0.123766352960047,0,0,1.20538905604795,1.46062018077475,0,0,0,0,0.286235987131057,0,0.125542639594803,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511450247374121,62.52897336253,51.6378047954966,70.2505616959995,3.9764297352555,22.3852040339212,0,0.443458794925128,0.175669571386252,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33472061276467,0,0,0,0,0.81014194788176,0,0,0,0,0,0,0,0,0,0,1.01304409331664,0.132409180813219,2.0078563452417,0.709336764396714,3.92474320099615,2.1349799145941,1.72667283892012,0,0,0,0.454072282934794,0,0,0,0,0,0,0,0,0,0,0,0,0,0.910161361938026,0,0,0,0,0,1.5324389789951,0.300476117813194,0.113432183160021,8.25192324168765,6.83383644219416,10.3846631568185,11.7035527472917,5.35873152039882,4.12224864073007,10.422543954569,0.843881661206331,5.16416127354353,9.59248342127635,10.6777882425067,0.80823028409406,10.6502877754984,10.2767140192193,1.52604533079439,0,0,0,0,0,0,0.10366105501537,0,0,0,1.28648187638577,0,0,0,0.354920400119532,0.168584690078102,0.482022059766964,0,0.217879444092406,0,0,0.196221465125346,0,0,0,0,0,0,1.96565443335525,3.54473944008842,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0.234817388471643,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.71072446022705,0,0,0,0,0.43596006883328,0,0.646358578788889,0,0,0.531876233169741,0,0,0,0,0,0,0,0.325736184293735,0.355391948742546,0,1.20575750823834,0,0.199945982364114,0,0,0,1.67737398844108,4.59447743336456,0,2.89562613335158,1.02738161275192,1.07436577943937,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0.271265023699736,1.45579603071565,2.85486382075459,0.788512075169673,0.937131319941706,0,2.27407504055985,0,0.664225598535437,0.921845842708516,0.434418072340414,0.195801157462741,0,0,0,0,0.606255142892519,3.32870879020994,3.32629322662648,5.45837177201309,1.2276957863045,5.61320188866147,2.69092213436972,4.09365799253363,3.53878626515936,1.48418066444991,0,2.30830242907065,0.246381468041427,0.519254429183621,0.697262270759755,0,0.200506470303285,0,1.03333003348146,0,0.655622074797121,0,0.0770153371044148,0,0,0,1.13733384070897,0,0,0,0,0,0,0,0,0,0,0,0.328014645699706,0,1.13345112812495,0,0,0,0,6.42735719376638,0.870036464629098,0,0,0,0,0,0.0852266274161009,0.534192213880424,0,0,0,0.10115778085555,0.929691098594572,7.55549632393536,0,0,0.532306030317022,0,2.96518750566272,2.57624796135584,0,0,0.190630193923825,0.255897791311334,0,0,3.13979456079692,0.179872457583315,0.274537029736055,0,0.202182481573316,1.58510321173008,0.421258456238981,0,2.19342140668156,2.11300293513511,0,0.141405431953713,1.13008116620243,0.551365343546124,10.6150236038595,12.2766247871054,0,0,0.405820753925408,0.6196469961995,0,0.143411352204052,0.0982490410131212,0.7133421029625,0,12.8775657531575,5.26871828735843,0,0,0,0,0,0.470719003883896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.586032717087576,0,0.111443384277478,0,4.7748896947538,5.93929361665277,2.45728561679386,0,0,0,0,0,1.19548792950642,0,0,0,0,23.3279690746356,0,1.25314822272926,0,0.197286811273867,0,0,0,0,0,0,0,0,0,0.254253650292766,0.945550727071745,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0.384751292518985,0.113942055847001,0,0,0,7.97502899329799,0.732780747214898,11.72676507241,0,0,0,0,0,0,0,0,0,0.489698424477443,0,0,0,0.265372693510018,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189559738885464,0,0,0,0,0,0,0,0.277349346026277,0.694238953340524,0,0.0870592065804026,0.34945333648406,1.0319161948297,0,0,0,0.290967049465258,0,0.677942222341597,0,0,0,0,0.240476460754601,0,9.39105165036012,0,0,0,0,0,0,0.271808412147228,0,0.713987523454252,0,0,0,0,0,0,0,0,1.43574604915363,0.199679000498991,0,0.446342914883745,0.268733889946905,1.08089965062721,0,0,0,0.0674035438541849,0.295282444544246,0,0,0,0,0,0,0,0,0,0.335434687599266,0.236417121897595,0.209818352539992,0,1.79287339332845,0,0,0.662091970365432,0.76280561296425,9.77399283156683,3.45688596480507,2.61269888087527,0,0,0,0,0.732761168390412,1.32506888912221,0,0,0,0.704815022316672,0.106787412567695,0,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0,0,0,0,0.151649117541648,1.14186133417987,0.235265819698172,0,0,0.149254802886874,0.467426619694449,1.10961172300523,1.7046270474758,1.25783950876288,7.11848977277229,0.457680136793847,3.4783112465545,1.24349760466224,0.295710299979268,0.159296767163702,0,0,0.829412415681711,0.265841714557995,0.521745061811734,0.300515217994437,3.42724690951916,0.813741466409323,0,0,0,2.78667122089031,0,0.686791410365586,1.34699795506368,0,0,0,0,1.36023555307363,0,0,3.58177682162975,2.16161013012681,0.219284049578707,0.176689145945881,0,0.168942440653073,0.256241518587947,0,0,0,0,0,0,0,0,0,0,0,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| ||
|short_description=p7@IGFBP3 | |||
}} | }} |
Latest revision as of 19:34, 18 September 2015
Short description: | p7@IGFBP3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_IGFBP3_5end |
Coexpression cluster: | C223_Chondrocyte_basal_renal_Fibroblast_Smooth_spindle_Synoviocyte |
Association with transcript: | -404bp_to_S56205_5end |
EntrezGene: | IGFBP3 |
HGNC: | 5472 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.75e-15 | 76 |
skin fibroblast | 2.66e-12 | 23 |
GAG secreting cell | 3.19e-11 | 9 |
carbohydrate secreting cell | 3.19e-11 | 9 |
chondroblast | 3.08e-09 | 6 |
chondrocyte | 3.08e-09 | 6 |
preadipocyte | 1.02e-08 | 12 |
multi fate stem cell | 3.78e-08 | 427 |
somatic stem cell | 8.89e-08 | 433 |
extracellular matrix secreting cell | 1.18e-07 | 15 |
stromal cell | 1.57e-07 | 28 |
stem cell | 2.66e-07 | 441 |
Ontology term | p-value | n |
---|---|---|
omentum | 2.66e-11 | 6 |
peritoneum | 2.66e-11 | 6 |
abdominal cavity | 2.66e-11 | 6 |
visceral peritoneum | 2.66e-11 | 6 |
cavity lining | 2.21e-09 | 12 |
serous membrane | 2.21e-09 | 12 |
integument | 3.45e-09 | 46 |
integumental system | 3.45e-09 | 46 |
skin of body | 1.70e-08 | 41 |
extraembryonic membrane | 9.86e-08 | 14 |
membranous layer | 9.86e-08 | 14 |
systemic artery | 2.47e-07 | 33 |
systemic arterial system | 2.47e-07 | 33 |
organ component layer | 5.18e-07 | 66 |
chorion | 6.50e-07 | 7 |
splanchnic layer of lateral plate mesoderm | 9.39e-07 | 83 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 1.01e-10 | 5 |
myotonic disease | 1.01e-10 | 5 |
muscle tissue disease | 1.01e-10 | 5 |
myopathy | 1.01e-10 | 5 |
muscular disease | 1.01e-10 | 5 |
myotonic dystrophy | 1.01e-10 | 5 |