FFCP PHASE1:Hg19::chr7:45954467..45954535,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr7:45954467..45954535,- to FFCP PHASE1:Hg19::chr7:45954467..45954535,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3486 | |EntrezGene=3486 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5472 | |HGNC=5472 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=388bp_to_ENST00000460209_5end | |||
|cluster_id=chr7:45954467..45954535,- | |||
|coexpression_cluster_id=C223 | |||
|description=CAGE_peak_6_at_IGFBP3_5end | |||
|id=chr7:45954467..45954535,- | |||
|ontology_enrichment_celltype=CL:0000055!1.51e-10!180 | |||
|ontology_enrichment_celltype_v019=CL:0002620;1.30e-12;23!CL:0000153;1.92e-10;9!CL:0000447;1.92e-10;9!CL:0002595;5.30e-09;5!CL:0000327;6.14e-09;15!CL:0000138;1.05e-08;6!CL:0000499;3.40e-08;28!CL:0002334;2.98e-07;12!CL:0000136;5.90e-07;13!CL:0000349;6.23e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,5.55e-13,76;CL:0002620,1.21e-12,23;CL:0000153,1.89e-10,9;CL:0000447,1.89e-10,9;CL:0000327,5.54e-09,15;CL:0002595,7.08e-09,5;CL:0000058,1.05e-08,6;CL:0000138,1.05e-08,6;CL:0000499,2.69e-08,28;CL:0002334,2.37e-07,12;CL:0000349,6.80e-07,19 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;9.13e-10;5!DOID:450;9.13e-10;5!DOID:66;9.13e-10;5!DOID:423;9.13e-10;5!DOID:0080000;9.13e-10;5!DOID:11722;9.13e-10;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,9.17e-10,5;DOID:450,9.17e-10,5;DOID:66,9.17e-10,5;DOID:423,9.17e-10,5;DOID:0080000,9.17e-10,5;DOID:11722,9.17e-10,5 | |||
|ontology_enrichment_uberon=UBERON:0005631!2.50e-08!14;UBERON:0000158!2.50e-08!14;UBERON:0000478!9.11e-08!24;UBERON:0004872!6.24e-07!84 | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;8.20e-12;9!UBERON:0000042;8.20e-12;9!UBERON:0003688;3.14e-10;6!UBERON:0002358;3.14e-10;6!UBERON:0003684;3.14e-10;6!UBERON:0001178;3.14e-10;6!UBERON:0002199;2.41e-09;46!UBERON:0002416;2.41e-09;46!UBERON:0003834;5.30e-09;5!UBERON:0001533;5.30e-09;5!UBERON:0002097;1.78e-08;41!UBERON:0000478;1.62e-07;24!UBERON:0003102;7.46e-07;50 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002199,3.24e-12,46;UBERON:0002416,3.24e-12,46;UBERON:0002097,1.58e-10,41;UBERON:0003688,2.65e-10,6;UBERON:0002358,2.65e-10,6;UBERON:0003684,2.65e-10,6;UBERON:0001178,2.65e-10,6;UBERON:0005631,3.13e-10,14;UBERON:0000158,3.13e-10,14;UBERON:0003834,7.08e-09,5;UBERON:0001533,7.08e-09,5;UBERON:0004457,1.82e-08,12;UBERON:0000042,1.82e-08,12;UBERON:0003124,2.29e-08,7;UBERON:0004923,7.27e-08,66;UBERON:0000478,1.65e-07,24 | |||
|phase1_expression=3.08853244759946,2.35510576280081,3.80576891059122,6.00439790118782,4.91657203870017,4.36169262050184,2.53299878168311,0,2.87304191019822,1.22866968250754,0,0,0.263766978228454,0.247532705920093,0.662794751455832,0.672325146451775,0.602694528023977,0,0,0.246242116153576,0.204000691244253,0.313454721478088,0,0.136874425072884,0,0,0,0,0,0,0.309632246632152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393010762749165,0,0,0,0,0,0,0,0,0,0.25618263945135,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.767175371061182,82.7695658960657,92.7475134676396,75.3201898596283,25.4491503056352,36.4976152726977,0,0.443458794925128,0.43917392846563,0.0654895377488563,0,0,0,0,0,0.476981248610684,0,0,0,0,0,0,0,0,0,0,0,0.33472061276467,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.95760732373446,1.64619665163954,0,2.29469296599051,0,1.68203280042692,3.20246987189115,2.4666754841716,0,0,0,0.302714855289863,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.612975591598039,0.45071417671979,0.226864366320042,12.5572744982203,5.76604949810132,10.8085269591377,16.2049191885577,7.21367704669072,7.9868567414145,12.4698293742165,2.86919764810153,6.23596833031671,12.1168211637175,11.2300876343605,0.646584227275248,24.4956618836464,12.594012278455,1.52604533079439,0,0,0,0,0,0.116193942869518,0.10366105501537,0,0.36497735907583,0,1.28648187638577,0,0.464367928031979,0,0.236613600079688,0.168584690078102,0.241011029883482,0.220587945464788,0,0.237270619111097,0.539325232640658,0,0,0,0,0,0,0,0,2.36315962672562,0,0,0.686271241194102,0,0,0,0,0,0,0,0,0.70445216541493,0.144366447761074,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.74384027533312,0,0.387815147273333,0,0.845302752556,0.531876233169741,1.04007436911366,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0.099972991182057,0,0,0,0.958499421966331,2.29723871668228,0,3.32997005335432,4.10952645100767,3.40215830155802,0,0,0,0,0,0,0.773288812777695,0,0,0,0,0,0.24538298343828,0,0.271265023699736,4.99130067673937,4.46072471992904,1.41932173530541,0.937131319941706,0.300946099727719,2.27407504055985,2.0694614258501,0.664225598535437,0.737476674166813,0.260650843404249,0.195801157462741,0,0,0,0,2.42502057157008,1.66435439510497,3.62868351995616,4.96215615637554,1.84154367945675,2.52594084989766,3.97231362692673,7.16390148693385,4.50390979202101,1.48418066444991,0.154209693802656,1.42049380250502,0.9033987161519,0,0.348631135379878,0,0.200506470303285,0,0.574072240823034,0,0.393373244878272,0.902399225814824,0.308061348417659,0,0,0.105551628892876,0,0.170093705276516,0.215915916102139,0,0,0,0.509752546090077,0,0.671624264166535,0,0,0,0,0,1.03041011647722,0,0,0,0,1.6068392984416,0.48335359146061,0,0,0,0,0,0.0852266274161009,0.623224249527161,0.165284915360978,0,0,0,2.32422774648643,8.18512101759664,0,0.308033580176089,0,0.869932992075073,5.18907813490976,9.30311763822943,0,0.632758849437452,0,0,0,0.636406495851874,4.70969184119538,0.359744915166629,0,0,0.202182481573316,6.34041284692033,0.421258456238981,0.975267478179181,2.19342140668156,6.33900880540533,0.545999645631943,0.282810863907425,2.26016233240486,2.2054613741845,14.5956574553068,15.7842318691355,0,0,0.608731130888112,0,0,0,0,0.35667105148125,0,14.9886421061342,8.89096210991735,0,0,0,0,0,0.847294206991012,0,0,0,0,0,0,0.569647187174163,0,0,0,0,0,0,0,1.71528151186722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37428108081644,0.586032717087576,0,0.111443384277478,0,6.20735660317994,7.12715233998333,5.22173193568695,0,0,0.111308705022906,0,0,0.796991953004279,0,0,0,0,30.4818795908571,0.269605053441981,0.537063524026827,0,0.986434056369336,0,1.11136990144637,0,0,0,0,0.0874599999961957,0,0,0,1.65471377237555,0,0,0,0,0,0,0,0,0,0,0.557694977114413,0.461701551022782,0,0,0,0,9.8890359516895,0.915975934018623,16.5240780565777,0,0,0,0,0,0,0,0,0,1.46909527343233,0,0,2.98578579323551,0.353830258013357,0,0.593042257361244,0.123563938946503,0,0,0,0,0,0,0,0.394584402849391,1.20990716048664,0,0.695052375913368,0,0,0,0,0,0,0,0,1.90915712168644,0.391969589657511,0,0.17472666824203,1.89184635718778,0,0,0.0821154570532092,0,0,0.225980740780532,0,0,0,0.391102765469606,0.0801588202515337,0,9.79067086952438,0,0,0,0,0,0.235694034616795,0,0.418411385249333,1.12198039399954,0,0,0,0,0,0,0.279282401272254,0.229160424011684,1.43574604915363,0.199679000498991,0,0.669514372325618,0.604651252380536,9.00749708856009,0,0,0,0,0.295282444544246,0,0,0.136203406111576,0,0,0,0,0,0.0607495566580247,1.67717343799633,0.315222829196793,0.262272940674991,0,1.79287339332845,0.191915197319445,0,1.32418394073086,3.30549098951175,7.60199442455198,0.864221491201268,0.326587360109409,0,0,0.511164065356265,0,0.732761168390412,1.32506888912221,0,0,0.342173675768659,0,0,0.471612915298998,0.414239055347196,0.496166021811951,0,0,0,0,0,0.306345576763462,0,0,0,0.122026264901963,0,0,0.110929051536852,0,0,0,0,1.14186133417987,0,0,0,0,1.16856654923612,1.10961172300523,0.75761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| 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| ||
|short_description=p6@IGFBP3 | |||
}} | }} |
Latest revision as of 19:45, 18 September 2015
Short description: | p6@IGFBP3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_IGFBP3_5end |
Coexpression cluster: | C223_Chondrocyte_basal_renal_Fibroblast_Smooth_spindle_Synoviocyte |
Association with transcript: | 388bp_to_ENST00000460209_5end |
EntrezGene: | IGFBP3 |
HGNC: | 5472 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 5.55e-13 | 76 |
skin fibroblast | 1.21e-12 | 23 |
GAG secreting cell | 1.89e-10 | 9 |
carbohydrate secreting cell | 1.89e-10 | 9 |
extracellular matrix secreting cell | 5.54e-09 | 15 |
smooth muscle cell of the subclavian artery | 7.08e-09 | 5 |
chondroblast | 1.05e-08 | 6 |
chondrocyte | 1.05e-08 | 6 |
stromal cell | 2.69e-08 | 28 |
preadipocyte | 2.37e-07 | 12 |
extraembryonic cell | 6.80e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
integument | 3.24e-12 | 46 |
integumental system | 3.24e-12 | 46 |
skin of body | 1.58e-10 | 41 |
omentum | 2.65e-10 | 6 |
peritoneum | 2.65e-10 | 6 |
abdominal cavity | 2.65e-10 | 6 |
visceral peritoneum | 2.65e-10 | 6 |
extraembryonic membrane | 3.13e-10 | 14 |
membranous layer | 3.13e-10 | 14 |
thoracic segment blood vessel | 7.08e-09 | 5 |
subclavian artery | 7.08e-09 | 5 |
cavity lining | 1.82e-08 | 12 |
serous membrane | 1.82e-08 | 12 |
chorion | 2.29e-08 | 7 |
organ component layer | 7.27e-08 | 66 |
extraembryonic structure | 1.65e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 9.17e-10 | 5 |
myotonic disease | 9.17e-10 | 5 |
muscle tissue disease | 9.17e-10 | 5 |
myopathy | 9.17e-10 | 5 |
muscular disease | 9.17e-10 | 5 |
myotonic dystrophy | 9.17e-10 | 5 |