FFCP PHASE1:Hg19::chr9:139940990..139941047,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr9:139940990..139941047,- to FFCP PHASE1:Hg19::chr9:139940990..139941047,-: NSchange) |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=56654 | |EntrezGene=56654 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7899 | |HGNC=7899 | ||
|TSSclassifier=strong | |||
|UniProt=Q9NQX5 | |UniProt=Q9NQX5 | ||
|association_with_transcript=-314bp_to_NM_015392,uc004ckr.2,uc004ckt.2,uc004cku.2_5end | |||
|cluster_id=chr9:139940990..139941047,- | |||
|coexpression_cluster_id=C94 | |||
|description=CAGE_peak_4_at_NPDC1_5end | |||
|id=chr9:139940990..139941047,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002178;1.70e-09;3!CL:0000167;5.40e-08;1!CL:0000164;5.40e-08;1!CL:0000502;5.40e-08;1!CL:0000172;5.40e-08;1!CL:0000173;5.40e-08;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002178,1.66e-09,3;CL:0000167,5.58e-08,1;CL:0000164,5.58e-08,1;CL:0000502,5.58e-08,1;CL:0000172,5.58e-08,1;CL:0000173,5.58e-08,1;CL:0002351,5.58e-08,1 | |||
|ontology_enrichment_development_v019=CL:0002351;5.40e-08;1!UBERON:0006242;8.28e-08;1!UBERON:0008425;8.28e-08;1!UBERON:0001045;2.04e-07;1 | |||
|ontology_enrichment_disease=DOID:305!2.08e-14!106;DOID:0050687!2.42e-09!143;DOID:5093!1.34e-07!4;DOID:1612!1.34e-07!4 | |||
|ontology_enrichment_disease_v019=DOID:5093;9.73e-26;4!DOID:1612;9.73e-26;4!DOID:3493;5.00e-14;2!DOID:299;1.04e-11;25!DOID:4430;5.40e-08;1!DOID:0050619;2.04e-07;1!DOID:1357;2.04e-07;1!DOID:5409;2.55e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:5093,9.16e-26,4;DOID:1612,9.16e-26,4;DOID:3493,5.17e-14,2;DOID:299,9.94e-12,25;DOID:4430,5.58e-08,1;DOID:0050619,1.39e-07,1;DOID:1357,1.39e-07,1;DOID:305,1.45e-07,106;DOID:5409,3.18e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0007023!2.03e-15!115;UBERON:0004921!8.13e-10!129;UBERON:0004185!8.13e-10!129;UBERON:0004119!2.88e-09!169;UBERON:0000925!2.88e-09!169;UBERON:0006595!2.88e-09!169;UBERON:0001007!6.96e-09!155;UBERON:0001555!6.96e-09!155;UBERON:0007026!6.96e-09!155;UBERON:0002294!4.17e-07!7;UBERON:0001173!4.17e-07!7;UBERON:0004912!4.17e-07!7;UBERON:0001004!4.67e-07!72;UBERON:0001049!8.60e-07!57;UBERON:0005068!8.60e-07!57;UBERON:0006241!8.60e-07!57;UBERON:0007135!8.60e-07!57 | |||
|ontology_enrichment_uberon_v019=UBERON:0005409;3.18e-16;22!UBERON:0004921;3.00e-14;33!UBERON:0000160;6.62e-12;17!UBERON:0001155;2.41e-11;9!UBERON:0000310;2.10e-10;10!UBERON:0001443;1.81e-09;11!UBERON:0000059;2.64e-09;11!UBERON:0002372;2.04e-07;1!UBERON:0001154;2.04e-07;1!UBERON:0001153;2.04e-07;1!UBERON:0001764;2.04e-07;1!UBERON:0009854;2.04e-07;1!UBERON:0001961;2.04e-07;1!UBERON:0001825;2.04e-07;1!UBERON:0001744;2.04e-07;1!UBERON:0001042;2.04e-07;1!UBERON:0001735;2.04e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005409,2.65e-14,25;UBERON:0000160,5.43e-12,17;UBERON:0001155,2.23e-11,9;UBERON:0000310,2.05e-10,10;UBERON:0001443,1.78e-09,11;UBERON:0000059,2.47e-09,11;UBERON:0001154,1.30e-07,1;UBERON:0001153,1.30e-07,1;UBERON:0001045,1.30e-07,1;UBERON:0001764,1.39e-07,1;UBERON:0001825,1.39e-07,1;UBERON:0004921,1.40e-07,118;UBERON:0002372,1.58e-07,1;UBERON:0001961,1.58e-07,1;UBERON:0001744,1.58e-07,1;UBERON:0001735,1.58e-07,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.487932798790507,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30120591877825,0,0.309868802321207,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0.393010762749165,0.411202997999018,0.501559486172034,0,0.473447805734733,0,0.222820913770347,0,0.221533894583621,0,0.640456598628376,0.260118695119756,0.164437904603676,0,0,0,0,0,0.226618685395132,0,0.68725489096526,0,0,0,0,0.150575119077773,0,0,0,0,0,0,0.144824403882799,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110293972732394,0.435758888184812,0,0,0.196221465125346,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,1.58040879591855,6.86788929675898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300343057843917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197030760201927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0,0.184161977871793,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.656029291399411,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0.192190067365106,0,0.30347334256665,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0.211673582723883,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0,0,0,0,0,3.55567026775618,0,0,0,0,0,0,0,0.994147647766298,0.140669416410513,0,0,0,0.398495976502139,1.93398740871803,1.25966373927138,0,0,0,0.359473404589307,0.716084698702437,0,0,0,0,0,0,0,2.08342208868187,3.32347999985544,0,0.1137934482855,0,0.709163045303809,0,0,0,0,0.361789315876224,1.52581736317083,0.221158519862449,0,0,0,0.278847488557207,0.307801034015188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.97630965539252,1.06149077404007,2.4441205797345,0,0,0,0,0,0.468528891450678,0,0.19566461893209,0,0.394584402849391,1.20990716048664,0,0,0,0,0,0,0,0,0,0,0,0.0979923974143777,0,0,0,0.0967563312890851,0.292357268344742,0.164230914106418,0.0969890164884194,0.0882561266915003,0.225980740780532,0,0,0,0.195551382734803,0.0801588202515337,3.62870091056899,0,2.16135625731159,0,0.171594997861965,0,0.124252535565433,0.471388069233591,0,0,0,0,0,0,0,0,0,0,0.229160424011684,0,0.199679000498991,0,0,0,0,0,0,0.0824158583811665,0,0.0984274815147488,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0.326587360109409,0,0,0,0,0,0,0.129282956361551,0,0,0.704815022316672,0.106787412567695,0.314408610199332,0,0,0,0,0,0,0,0,0,1.88464915500281,0,0,0,0,0.110929051536852,0.124192805882767,0,0,0,0,0,0.936669811613763,0.579684114443301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179088841081487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211312123358627,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256916900385838,0,0.159633859057151,0,0,0.276629009856872,0,0,0,0.11796972334774,0,0,0,0,0,0.0752103283492573,0,1.56302802246618,0,0,0.739280431085226,0.0675375846183947,0,0,0,0,0.548257766857182,0.992422356778588,0.175871244359621,0.255524855279191,0,0,0.606965604236632,1.13831095675649,0,0,0,0.40781839786099,0.131545547125698,0,0.111231401892069,6.67191289229369,0.471346769748006,0.280272163313789,0,0,0,0,0.47404083519818,0,0,0,0.207216164163037,0.17071847709395,0,3.01159151174194,0,0,0.423387050190929,0.22910686854405,0,0,0,3.4352581765335,4.75479907430851,0,0,0,0,6.55030497693896,0.994753875806841,0,1.01651473835064,0,9.35969630113376,1.77500563648273,0.218559560503957,59.2599793415519,0,6.59894331884553,0.196308467114945,0.297046400327086,0,0,0,0,0,1.2498775702396,0.352894871715692,0.561689566824178,0,0.917458566809082,0,0,0.135982980381829,0,1.5870805215462,0,0,0,0,0,0,0,0,0,0,0.151557396436479,0,0,0.103432995861895,1.70587185520785,0.476128862927481,0,0,0,0,0,0.435433495793923,0,1.75115337837928,2.07994395638761,0.99798106963804,0,0,0,0,0,0.366724332548599,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.487932798790507,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30120591877825,0,0.309868802321207,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0.393010762749165,0.411202997999018,0.501559486172034,0,0.473447805734733,0,0.222820913770347,0,0.221533894583621,0,0.640456598628376,0.260118695119756,0.164437904603676,0,0,0,0,0,0.226618685395132,0,0.68725489096526,0,0,0,0,0.150575119077773,0,0,0,0,0,0,0.144824403882799,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110293972732394,0.435758888184812,0,0,0.196221465125346,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,1.58040879591855,6.86788929675898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300343057843917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197030760201927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0,0.184161977871793,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.656029291399411,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0.192190067365106,0,0.30347334256665,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0.211673582723883,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0,0,0,0,0,3.55567026775618,0,0,0,0,0,0,0,0.994147647766298,0.140669416410513,0,0,0,0.398495976502139,1.93398740871803,1.25966373927138,0,0,0,0.359473404589307,0.716084698702437,0,0,0,0,0,0,0,2.08342208868187,3.32347999985544,0,0.1137934482855,0,0.709163045303809,0,0,0,0,0.361789315876224,1.52581736317083,0.221158519862449,0,0,0,0.278847488557207,0.307801034015188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.97630965539252,1.06149077404007,2.4441205797345,0,0,0,0,0,0.468528891450678,0,0.19566461893209,0,0.394584402849391,1.20990716048664,0,0,0,0,0,0,0,0,0,0,0,0.0979923974143777,0,0,0,0.0967563312890851,0.292357268344742,0.164230914106418,0.0969890164884194,0.0882561266915003,0.225980740780532,0,0,0,0.195551382734803,0.0801588202515337,3.62870091056899,0,2.16135625731159,0,0.171594997861965,0,0.124252535565433,0.471388069233591,0,0,0,0,0,0,0,0,0,0,0.229160424011684,0,0.199679000498991,0,0,0,0,0,0,0.0824158583811665,0,0.0984274815147488,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0.326587360109409,0,0,0,0,0,0,0.129282956361551,0,0,0.704815022316672,0.106787412567695,0.314408610199332,0,0,0,0,0,0,0,0,0,1.88464915500281,0,0,0,0,0.110929051536852,0.124192805882767,0,0,0,0,0,0.936669811613763,0.579684114443301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179088841081487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211312123358627,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256916900385838,0,0.159633859057151,0,0,0.276629009856872,0,0,0,0.11796972334774,0,0,0,0,0,0.0752103283492573,0,1.56302802246618,0,0,0.739280431085226,0.0675375846183947,0,0,0,0,0.548257766857182,0.992422356778588,0.175871244359621,0.255524855279191,0,0,0.606965604236632,1.13831095675649,0,0,0,0.40781839786099,0.131545547125698,0,0.111231401892069,6.67191289229369,0.471346769748006,0.280272163313789,0,0,0,0,0.47404083519818,0,0,0,0.207216164163037,0.17071847709395,0,3.01159151174194,0,0,0.423387050190929,0.22910686854405,0,0,0,3.4352581765335,4.75479907430851,0,0,0,0,6.55030497693896,0.994753875806841,0,1.01651473835064,0,9.35969630113376,1.77500563648273,0.218559560503957,59.2599793415519,0,6.59894331884553,0.196308467114945,0.297046400327086,0,0,0,0,0,1.2498775702396,0.352894871715692,0.561689566824178,0,0.917458566809082,0,0,0.135982980381829,0,1.5870805215462,0,0,0,0,0,0,0,0,0,0,0.151557396436479,0,0,0.103432995861895,1.70587185520785,0.476128862927481,0,0,0,0,0,0.435433495793923,0,1.75115337837928,2.07994395638761,0.99798106963804,0,0,0,0,0,0.366724332548599,0,0,0,0 | ||
|short_description=p4@NPDC1 | |||
}} | }} |
Latest revision as of 15:35, 16 September 2015
Short description: | p4@NPDC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_NPDC1_5end |
Coexpression cluster: | C94_smallcell_adrenal_lung_nonsmall_small_somatostatinoma_teratocarcinoma |
Association with transcript: | -314bp_to_NM_015392, uc004ckr.2, uc004ckt.2, uc004cku.2_5end |
EntrezGene: | NPDC1 |
HGNC: | 7899 |
UniProt: | Q9NQX5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of stomach | 1.66e-09 | 3 |
peptide hormone secreting cell | 5.58e-08 | 1 |
enteroendocrine cell | 5.58e-08 | 1 |
type D enteroendocrine cell | 5.58e-08 | 1 |
somatostatin secreting cell | 5.58e-08 | 1 |
pancreatic D cell | 5.58e-08 | 1 |
progenitor cell of endocrine pancreas | 5.58e-08 | 1 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system | 2.65e-14 | 25 |
intestine | 5.43e-12 | 17 |
colon | 2.23e-11 | 9 |
breast | 2.05e-10 | 10 |
chest | 1.78e-09 | 11 |
large intestine | 2.47e-09 | 11 |
vermiform appendix | 1.30e-07 | 1 |
caecum | 1.30e-07 | 1 |
midgut | 1.30e-07 | 1 |
maxillary sinus | 1.39e-07 | 1 |
paranasal sinus | 1.39e-07 | 1 |
subdivision of digestive tract | 1.40e-07 | 118 |
tonsil | 1.58e-07 | 1 |
mucosa-associated lymphoid tissue | 1.58e-07 | 1 |
lymphoid tissue | 1.58e-07 | 1 |
tonsillar ring | 1.58e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
thoracic cancer | 9.16e-26 | 4 |
breast cancer | 9.16e-26 | 4 |
signet ring cell adenocarcinoma | 5.17e-14 | 2 |
adenocarcinoma | 9.94e-12 | 25 |
somatostatinoma | 5.58e-08 | 1 |
paranasal sinus cancer | 1.39e-07 | 1 |
maxillary sinus cancer | 1.39e-07 | 1 |
carcinoma | 1.45e-07 | 106 |
lung small cell carcinoma | 3.18e-07 | 4 |