FFCP PHASE1:Mm9::chr10:66648451..66648471,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 mm9::chr10:66648451..66648471,+ to FFCP PHASE1:Mm9::chr10:66648451..66648471,+: NSchange) |
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(7 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=108829 | |EntrezGene=108829 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=640 | |||
|TSSclassifier=NA | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-25bp_to_ENSMUST00000173661_5end | |||
|cluster_id=chr10:66648451..66648471,+ | |||
|description=CAGE_peak_3_at_Jmjd1c_5end | |||
|id=chr10:66648451..66648471,+ | |||
|ontology_enrichment_celltype=CL:0000988!2.21e-09!32;CL:0002032!2.21e-09!32;CL:0000037!2.21e-09!32;CL:0000566!2.21e-09!32;CL:0000837!2.21e-09!32;CL:0000838!8.11e-08!12;CL:0000542!2.10e-07!13;CL:0000051!2.10e-07!13;CL:0000084!3.77e-07!11;CL:0000827!3.77e-07!11;CL:0002031!8.64e-07!25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,1.74e-09,32;CL:0002032,1.74e-09,32;CL:0000037,1.74e-09,32;CL:0000837,1.74e-09,32;CL:0000838,7.68e-08,12;CL:0000542,2.00e-07,13;CL:0000051,2.00e-07,13;CL:0000084,3.59e-07,11;CL:0000827,3.59e-07,11;CL:0002031,7.03e-07,25 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!8.33e-10!48;UBERON:0002405!4.87e-09!70;UBERON:0002390!5.24e-09!45;UBERON:0003061!5.24e-09!45;UBERON:0004177!1.36e-08!29;UBERON:0003081!1.03e-07!88;UBERON:0005057!3.18e-07!51;UBERON:0003408!7.30e-07!24;UBERON:0002370!8.21e-07!23;UBERON:0000974!8.21e-07!23;UBERON:0004807!8.21e-07!23;UBERON:0005058!8.21e-07!23;UBERON:0003351!8.21e-07!23;UBERON:0009113!8.21e-07!23;UBERON:0003295!8.21e-07!23;UBERON:0009722!8.21e-07!23;UBERON:0005562!8.21e-07!23;UBERON:0007690!8.21e-07!23;UBERON:0004119!8.85e-07!130;UBERON:0000925!8.85e-07!130;UBERON:0006595!8.85e-07!130 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,7.34e-10,48;UBERON:0002405,7.34e-10,48;UBERON:0002390,4.66e-09,45;UBERON:0003061,4.66e-09,45;UBERON:0004177,6.51e-09,29;UBERON:0005057,6.51e-09,29;UBERON:0000077,4.47e-08,35;UBERON:0003081,3.35e-07,87;UBERON:0003408,3.66e-07,24;UBERON:0002370,4.08e-07,23;UBERON:0000974,4.08e-07,23;UBERON:0004807,4.08e-07,23;UBERON:0005058,4.08e-07,23;UBERON:0003351,4.08e-07,23;UBERON:0009113,4.08e-07,23;UBERON:0003295,4.08e-07,23;UBERON:0009722,4.08e-07,23;UBERON:0005562,4.08e-07,23;UBERON:0007690,4.08e-07,23 | |||
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|phase1_expression=4.00372117761985,6.97950815278722,4.09499315450582,8.77146212789807,7.01254021924886,2.35030980676646,3.73780224952841,24.7916781007826,20.8367308784467,28.3218076849612,6.33506482434368,5.34473465268754,32.8705401467915,25.0896554942523,9.99329285446988,14.3757439846776,5.59649502502517,42.7451234060412,48.26428062922,37.7706790100247,2.29616883407888,8.63831275447702,8.35839325244593,6.39969691173627,2.75291137280604,2.8711598205751,0.86152399231815,2.58565479223067,3.6104449696711,2.01624103807945,1.10865255327652,2.54012269383853,2.46025915033828,0,1.44425809875637,0.664938581433969,1.42918549383658,4.60384793810598,3.1253413780952,1.0470474879476,27.6468799374577,1.36609096991689,1.45653105909346,7.30201544258348,6.2853697356099,3.67093504323363,0,0.436050312760893,0.439372365468944,0,0.279972843250725,0,42.1134341204918,19.5847778343063,24.1987535382574,0.771778308107841,0.85960031981627,1.03134418455488,0.404632921719196,0,0,1.0165335962074,0,0.899899717281399,0.988866362566974,0.7104801149461,0.599200221036809,0.768436610643109,0.829516898467821,0.810035629990144,0.420649922702764,0.285650984403804,0.441737081903227,0.979926393719632,0.766763768145891,0,2.20231761998777,1.65993539510744,1.38245879930619,1.18697658957174,0.457438218012048,1.04182674111352,1.11673199600552,0.56276261003168,0.916789486660861,0.589257170947335,0.854230084794618,0.745597783301202,6.81535739998656,9.8998743739889,13.6236309689789,0,2.719885334831,2.15881276655127,1.29955283489534,0.896053774194671,2.80888840263504,0.852151612890289,0,1.06001872353102,2.39433813620357,0,0,0,1.73192832808971,1.52015919285059,1.51657333504435,3.4255163915718,61.6272163080269,4.45326417194474,0.867426633830679,1.82679286987285,2.07553947530453,3.3158980921577,4.70354828542819,1.50799909595611,5.93267922562497,3.32578520915797,5.30766331169925,4.36770494858005,5.74187947997023,6.30337829075789,0,4.09893115816166,3.97948742945565,4.34276993854605,27.078218138338,13.7977628128484,18.1710424714483,3.2953940669061,2.28750301409313,1.50785222535437,1.04294592115366,2.04572365864264,1.87009240103604,1.94689515681309,2.64782346010822,7.0911973247753,1.51633655060205,3.57751155007006,3.12289063110489,2.5289231487682,2.88099407688559,2.41127708537144,3.12967896096108,5.12454881139399,4.02917415606834,5.69147415625834,0.646703978798527,2.83659120251729,2.81521798662318,3.06874025398605,3.05851974148158,1.39300866608867,3.90986059175093,1.19420560091096,7.02213187313235,9.00717674901503,6.81992398549422,2.07125772535502,2.11073453982987,2.70093092191522,3.07768156260773,2.36117078096885,2.62254091908543,0.930135779001631,1.60964040839772,3.38619492864792,2.30383789878873,3.94001913789829,4.9451973822972,3.21639972335731,3.95190207523891,3.48936688776967,2.10289948564127,2.26390147234426,5.28670052774077,3.43785736662608,2.77274725695804,1.16118335930219,3.22168653305233,4.43703754171354,4.89231696458715,3.23383564391351,1.89811624617805,6.25856027951241,4.52403375840485,6.76452004939913,7.60359939764569,4.49409704327111,4.97117514711797,4.58024928485045,0,2.85621281524322,5.63538678365402,1.62921062276251,2.90928730751439,3.43665517462561,2.78240763346732,2.50937251565324,2.98297582898612,2.83813477020141,0.889357881261447,4.17112764290235,2.94838492669805,4.72210436008193,3.65148218499305,2.17059443777175,2.80088436959562,4.60313819921297,5.0261920300261,2.74561413188081,5.75072826109418,6.69853705803306,6.24075346229121,3.28352541331245,1.97337154874103,5.78932225636041,6.28160846566456,1.51593129416388,1.46668478797823,1.86719594352707,2.58159273117352,2.68010011906905,2.61848004974615,1.75620283072019,5.04432461139811,3.76489972402917,3.34855014180723,5.07976275618788,3.45369963731791,3.61622646453779,3.01582567878545,4.35124547054968,5.90117127622843,4.13905119457099,3.05046120976805,4.21962071731931,1.80328439914343,1.51482556322624,0.94652465824877,2.34263246577983,2.15423397732799,3.10659437338318,6.23836287430704,3.11384183867716,1.61924280669958,2.04579100537918,2.76701444562566,2.57057053137446,5.39372323791421,1.6025904330053,2.44330439030364,3.95928295134085,3.98235415019888,2.18502572539483,1.209294227859,4.90373207365335,1.77181135728464,3.99665692327106,5.42699415653264,7.63420831902762,4.63446591900138,4.10847785316561,7.37930260024991,1.03135543248187,5.44703369206061,2.16073312837572,0.905510786479282,2.14337035031592,3.90148514013002,3.21063871683727,2.79733335023606,1.8267896946876,3.52007562095566,3.38931313382112,0.661585194164886,4.45192882941996,6.45857706783622,4.16159182004275,3.81991500810037,4.26766339337159,5.82961673259701,3.33765543618917,12.4735742982432,1.857481811669,6.85219751267933,10.5486335922627,19.2738861086645,11.6676868335327,39.6049741885683,43.384950220334,33.8589935820838,0.954670618015114,2.53068794864908,2.03319467126849,2.48412283890143,1.46361807210128,3.9305261474312,2.42755823492677,1.81837602595739,2.6175594198403,2.46268449254406,3.72803587852155,1.12738587736838,1.49516546043979,0.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|short_description=p3@Jmjd1c | |||
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Latest revision as of 05:15, 26 September 2015
Short description: | p3@Jmjd1c |
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Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Jmjd1c_5end |
Coexpression cluster: | MCL_coexpression_mm9:640 |
Association with transcript: | -25bp_to_ENSMUST00000173661_5end |
EntrezGene: | Jmjd1c |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 1.74e-09 | 32 |
hematopoietic oligopotent progenitor cell | 1.74e-09 | 32 |
hematopoietic stem cell | 1.74e-09 | 32 |
hematopoietic multipotent progenitor cell | 1.74e-09 | 32 |
lymphoid lineage restricted progenitor cell | 7.68e-08 | 12 |
lymphocyte | 2.00e-07 | 13 |
common lymphoid progenitor | 2.00e-07 | 13 |
T cell | 3.59e-07 | 11 |
pro-T cell | 3.59e-07 | 11 |
hematopoietic lineage restricted progenitor cell | 7.03e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 7.34e-10 | 48 |
immune system | 7.34e-10 | 48 |
hematopoietic system | 4.66e-09 | 45 |
blood island | 4.66e-09 | 45 |
hemopoietic organ | 6.51e-09 | 29 |
immune organ | 6.51e-09 | 29 |
mixed endoderm/mesoderm-derived structure | 4.47e-08 | 35 |
lateral plate mesoderm | 3.35e-07 | 87 |
gland of gut | 3.66e-07 | 24 |
thymus | 4.08e-07 | 23 |
neck | 4.08e-07 | 23 |
respiratory system epithelium | 4.08e-07 | 23 |
hemolymphoid system gland | 4.08e-07 | 23 |
pharyngeal epithelium | 4.08e-07 | 23 |
thymic region | 4.08e-07 | 23 |
pharyngeal gland | 4.08e-07 | 23 |
entire pharyngeal arch endoderm | 4.08e-07 | 23 |
thymus primordium | 4.08e-07 | 23 |
early pharyngeal endoderm | 4.08e-07 | 23 |