Personal tools

FF:10006-101B2: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(11 intermediate revisions by 2 users not shown)
Line 1: Line 1:
{{f5samples
{{f5samples
|id=FF:10006-101B2
|DRA_sample_Accession=dog_CAGE@SAMD00053777
|name=Universal RNA - Dog Normal Tissues Biochain, pool1
|DRA_sample_Accession_Zoo=dog_sRNA@SAMD00053777
|sample_id=10006
|accession_numbers=dog_CAGE;DRX057299;DRR063058;DRZ007585;DRZ007598
|rna_tube_id=101B2
|accession_numbers_Zoo=dog_sRNA;DRX163590;DRR172979;DRZ014426!dog_sRNA;DRX163591;DRR172980;DRZ014427!dog_sRNA;DRX163592;DRR172981;DRZ014428
|rna_box=101
|ancestors_in_anatomy_facet=UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|rna_position=B2
|sample_cell_lot=NA
|sample_cell_catalog=NA
|sample_company=Biochain
|rna_lot_number=B205003
|rna_catalog_number=Cat:R4734565-1
|sample_species=Dog (Canis lupus familaris)
|sample_strain=Beagle
|sample_dev_stage=1.5 years adult
|sample_tissue=unclassifiable
|sample_donor(cell lot)=4 pool
|sample_sex=mixed
|sample_age=
|sample_ethnicity=
|rna_rin=8.1
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=CELL MIXTURE - tissue sample
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=normal
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_weight_ug=100
|rna_concentration=1
|sample_note=
|profile_hcage=CNhs10590,LSID656,release008,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=SRhi10007,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000101,FF:0000016,FF:0000001,FF:0000004
|comment=
|created_by=
|creation_date=
|def=
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 66: Line 38:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|top_motifs=
|comment=
|created_by=
|creation_date=
|def=
|has_quality=PATO:0000461
|has_quality=PATO:0000461
|id=FF:10006-101B2
|is_a=FF:0000004;;FF:0000016
|is_a=FF:0000004;;FF:0000016
|is_obsolete=
|library_id=CNhs10590
|name=Universal RNA - Dog Normal Tissues Biochain, pool1
|namespace=
|namespace=
|part_of=
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs10590,LSID656,release008,COMPLETED
|profile_rnaseq=,,,
|profile_srnaseq=SRhi10007,,,
|rna_box=101
|rna_catalog_number=Cat:R4734565-1
|rna_concentration=1
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_lot_number=B205003
|rna_od260/230=
|rna_od260/280=
|rna_position=B2
|rna_rin=8.1
|rna_sample_type=total RNA
|rna_tube_id=101B2
|rna_weight_ug=100
|sample_age=
|sample_category=tissues
|sample_cell_catalog=NA
|sample_cell_line=
|sample_cell_lot=NA
|sample_cell_type=CELL MIXTURE - tissue sample
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Biochain
|sample_description=
|sample_dev_stage=1.5 years adult
|sample_disease=normal
|sample_donor(cell lot)=4 pool
|sample_ethnicity=
|sample_experimental_condition=
|sample_id=10006
|sample_note=
|sample_sex=mixed
|sample_species=Canis lupus familaris
|sample_strain=Beagle
|sample_tissue=unclassifiable
|top_motifs=
|xref=
|zenbu_config=http://fantom.gsc.riken.jp/zenbu/gLyphs/#config=4z61KhduJdFmBsHnv6C65D
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_dog;search_select_hide=table111:FF:10006-101B2;search_select_hide=table117:FF:10006-101B2
|zoo_library_id=SRhi10007.GGCTAC!SRhi10008.GGTAGC!SRhi10011.GTCCGC
}}
}}

Latest revision as of 09:37, 5 June 2020


Name:Universal RNA - Dog Normal Tissues Biochain, pool1
Species:Canis lupus familaris
Library ID:CNhs10590
Sample type:tissues
ZENBU report :link
Additional information
Sample information
strainBeagle
tissueunclassifiable
dev stage1.5 years adult
sexmixed
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyBiochain
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberB205003
catalog numberCat:R4734565-1
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
dog_CAGE  SAMD00053777
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10590 dog_CAGE DRX057299 DRR063058
Accession ID

Library idBAMCTSS
CNhs10590 DRZ007585 DRZ007598

sRNA Accession numbers
MethodSample accession id
dog_sRNA  SAMD00053777
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10007.GGCTAC dog_sRNA DRX163590 DRR172979
SRhi10008.GGTAGC dog_sRNA DRX163591 DRR172980
SRhi10011.GTCCGC dog_sRNA DRX163592 DRR172981
Accession ID

Library idBAMCTSS
SRhi10007.GGCTAC DRZ014426
SRhi10008.GGTAGC DRZ014427
SRhi10011.GTCCGC DRZ014428



FANTOM5 (FF) ontology

Direct parent terms

has_quality relathionship
PATO:0000461

Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000016 (canine sample)
0000001 (sample)
0000004 (tissue sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=FF:10006-101B2&oldid=4578597"