FFCP PHASE1:Hg19::chr10:30151938..30151956,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr10:30151938..30151956,- | |||
|coexpression_cluster_id=C524 | |||
|description=CAGE_peak_at_chr10:30151938..30151956,- | |description=CAGE_peak_at_chr10:30151938..30151956,- | ||
|id=chr10:30151938..30151956,- | |id=chr10:30151938..30151956,- | ||
|ontology_enrichment_celltype=CL:0000066!5.16e-19!254;CL:0002621!1.34e-11!3;CL:0002076!1.00e-10!43;CL:0000064!2.44e-10!3;CL:0005012!2.44e-10!3;CL:0000067!2.44e-10!3;CL:0002304!2.44e-10!3;CL:0000223!1.08e-09!59;CL:0002251!3.78e-09!21;CL:0000075!2.14e-08!27;CL:0000306!2.45e-08!4;CL:0002222!2.45e-08!4;CL:0002224!2.45e-08!4;CL:1000415!7.51e-08!2;CL:1000449!5.52e-07!16;CL:1000507!8.54e-07!12;CL:1000494!8.54e-07!12 | |ontology_enrichment_celltype=CL:0000066!5.16e-19!254;CL:0002621!1.34e-11!3;CL:0002076!1.00e-10!43;CL:0000064!2.44e-10!3;CL:0005012!2.44e-10!3;CL:0000067!2.44e-10!3;CL:0002304!2.44e-10!3;CL:0000223!1.08e-09!59;CL:0002251!3.78e-09!21;CL:0000075!2.14e-08!27;CL:0000306!2.45e-08!4;CL:0002222!2.45e-08!4;CL:0002224!2.45e-08!4;CL:1000415!7.51e-08!2;CL:1000449!5.52e-07!16;CL:1000507!8.54e-07!12;CL:1000494!8.54e-07!12 | ||
|ontology_enrichment_celltype_v019=CL:1001319;1.81e-40;1!CL:1000600;1.81e-40;1!CL:1000415;5.15e-21;2!CL:0000306;3.26e-11;4!CL:0002222;3.26e-11;4!CL:0002224;3.26e-11;4!CL:0002149;5.54e-08;6!CL:0002255;5.54e-08;6 | |||
|ontology_enrichment_celltype_v019_2=CL:1001319,1.48e-40,1;CL:1000600,1.48e-40,1;CL:1000415,3.81e-21,2;CL:0000306,3.79e-11,4;CL:0002222,3.79e-11,4;CL:0002224,3.79e-11,4;CL:0002149,5.54e-08,6;CL:0002255,5.54e-08,6 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:1749!1.10e-10!14;DOID:305!3.86e-09!106 | |||
|ontology_enrichment_disease_v019=DOID:3001;5.54e-08;6 | |||
|ontology_enrichment_disease_v019_2=DOID:3001,5.54e-08,6 | |||
|ontology_enrichment_uberon=UBERON:0007625!5.91e-14!11;UBERON:0000488!3.00e-13!4;UBERON:0000344!6.77e-13!12;UBERON:0001949!1.34e-11!3;UBERON:0001801!9.44e-11!14;UBERON:0003729!1.12e-10!5;UBERON:0001444!1.66e-10!48;UBERON:0001778!2.44e-10!3;UBERON:0001775!2.44e-10!3;UBERON:0002203!7.32e-09!6;UBERON:0001768!7.32e-09!6;UBERON:0002294!1.94e-08!7;UBERON:0001173!1.94e-08!7;UBERON:0004912!1.94e-08!7;UBERON:0010077!2.45e-08!4;UBERON:0005389!2.45e-08!4;UBERON:0000484!2.45e-08!4;UBERON:0002546!2.45e-08!4;UBERON:0000965!2.45e-08!4;UBERON:0001803!2.45e-08!4;UBERON:0003073!2.45e-08!4;UBERON:0005426!2.45e-08!4;UBERON:0003343!4.47e-08!4;UBERON:0004785!4.47e-08!4;UBERON:0000020!5.21e-08!23;UBERON:0001255!6.32e-08!2;UBERON:0001556!6.32e-08!2;UBERON:0000019!1.16e-07!19;UBERON:0000047!1.16e-07!19;UBERON:0004088!1.16e-07!19;UBERON:0003072!1.16e-07!19;UBERON:0003071!1.16e-07!19;UBERON:0004128!1.16e-07!19;UBERON:0001032!1.27e-07!24;UBERON:0004456!1.27e-07!24;UBERON:0000970!3.12e-07!20;UBERON:0000058!3.13e-07!26;UBERON:0004211!5.52e-07!16;UBERON:0001285!5.52e-07!16;UBERON:0007684!5.52e-07!16;UBERON:0003220!5.52e-07!16;UBERON:0004208!5.52e-07!16;UBERON:0002104!7.67e-07!21;UBERON:0001456!7.67e-07!21;UBERON:0009773!8.54e-07!12;UBERON:0001231!8.54e-07!12;UBERON:0004810!8.54e-07!12;UBERON:0000033!8.72e-07!123 | |||
|ontology_enrichment_uberon_v019=UBERON:0004645;1.81e-40;1!UBERON:0001256;1.81e-40;1!UBERON:0001259;1.81e-40;1!UBERON:0002294;1.61e-23;7!UBERON:0001173;1.61e-23;7!UBERON:0001255;5.15e-21;2!UBERON:0001556;5.15e-21;2!UBERON:0002110;1.71e-14;3!UBERON:0002394;3.26e-11;4!UBERON:0010077;3.26e-11;4!UBERON:0005389;3.26e-11;4!UBERON:0000484;3.26e-11;4!UBERON:0003928;3.26e-11;4!UBERON:0000965;3.26e-11;4!UBERON:0001803;3.26e-11;4!UBERON:0002075;8.11e-10;18!UBERON:0000365;3.10e-09;5!UBERON:0005910;6.55e-08;6!UBERON:0002423;2.43e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004645,1.48e-40,1;UBERON:0001256,1.48e-40,1;UBERON:0001259,1.48e-40,1;UBERON:0001255,4.66e-21,2;UBERON:0001556,4.66e-21,2;UBERON:0002294,1.35e-18,9;UBERON:0001173,1.35e-18,9;UBERON:0004912,1.35e-18,9;UBERON:0002110,1.40e-14,3;UBERON:0006242,1.40e-14,3;UBERON:0010077,3.79e-11,4;UBERON:0005389,3.79e-11,4;UBERON:0000484,3.79e-11,4;UBERON:0002546,3.79e-11,4;UBERON:0000965,3.79e-11,4;UBERON:0001803,3.79e-11,4;UBERON:0003073,3.79e-11,4;UBERON:0005426,3.79e-11,4;UBERON:0002075,7.42e-10,18;UBERON:0000365,2.97e-09,5;UBERON:0005910,6.34e-08,6;UBERON:0002394,6.78e-08,6;UBERON:0003928,6.78e-08,6;UBERON:0009497,2.35e-07,25;UBERON:0000015,2.35e-07,25;UBERON:0002423,2.35e-07,25;UBERON:0006235,2.35e-07,25;UBERON:0004161,2.35e-07,25 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246242116153576,0,0.313454721478088,0,0.273748850145768,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0.221729397462564,0.175669571386252,0,0,0,0,0,0,0,0,0,0,0,0,0,0.419499436209906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.57978255948989,0.272746120590835,0.573609190778008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245976877086227,0.171567810298526,0.658501712451753,0,0,0.0925884451585296,0,0,0,0.115930404975077,0.234817388471643,0,0,0,0,0,0,0,0,0,0.16798212819886,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.542530047399471,0,0,0,0.117141414992713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.601519410909855,0,0,0,0,0.451199612907412,0.15403067420883,0,0,0.105551628892876,0,0,0.215915916102139,0,0,0,0.254876273045038,0,0.223874754722178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.61763032065188,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.326465616318295,0,0,0,0,0,0,0,0,0,0,0,0,0.586993856796269,0,0,0,0,0,0,0,0,0,0,0,0,0.277349346026277,0.520679215005393,0.0979923974143777,0.435296032902013,0,0,0.0967563312890851,0,0,0,0,0,0,0,0,1.95551382734803,0.0801588202515337,0,0,0,0,0,0,0,0,0,0.523014231561666,0,0,0,0,0,0,0,0,0,0,0.399358000997982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335434687599266,0,0,0,0,0,0,0,0,0,0,0,1.19730191562487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.249960815924213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.147855149989634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.983091635014877,0.211312123358627,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196295437002051,0,0.183428598521679,0.231051332300676,0,0,0,0,0,0,0,0,0.887136517302272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171488009437418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.56052666195365,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245148321753905,0,0,0,0,0,0,0,0,0,0,0.0802413666891683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26721740526556,0,0,0,0,0,0,0,0,0,0,0,0.0636471582781649,0,0,0,0,0,0,1.87227517805241,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246242116153576,0,0.313454721478088,0,0.273748850145768,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0.221729397462564,0.175669571386252,0,0,0,0,0,0,0,0,0,0,0,0,0,0.419499436209906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.57978255948989,0.272746120590835,0.573609190778008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245976877086227,0.171567810298526,0.658501712451753,0,0,0.0925884451585296,0,0,0,0.115930404975077,0.234817388471643,0,0,0,0,0,0,0,0,0,0.16798212819886,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.542530047399471,0,0,0,0.117141414992713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.601519410909855,0,0,0,0,0.451199612907412,0.15403067420883,0,0,0.105551628892876,0,0,0.215915916102139,0,0,0,0.254876273045038,0,0.223874754722178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.61763032065188,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.326465616318295,0,0,0,0,0,0,0,0,0,0,0,0,0.586993856796269,0,0,0,0,0,0,0,0,0,0,0,0,0.277349346026277,0.520679215005393,0.0979923974143777,0.435296032902013,0,0,0.0967563312890851,0,0,0,0,0,0,0,0,1.95551382734803,0.0801588202515337,0,0,0,0,0,0,0,0,0,0.523014231561666,0,0,0,0,0,0,0,0,0,0,0.399358000997982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335434687599266,0,0,0,0,0,0,0,0,0,0,0,1.19730191562487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.249960815924213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.147855149989634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.983091635014877,0.211312123358627,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196295437002051,0,0.183428598521679,0.231051332300676,0,0,0,0,0,0,0,0,0.887136517302272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171488009437418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.56052666195365,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245148321753905,0,0,0,0,0,0,0,0,0,0,0.0802413666891683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26721740526556,0,0,0,0,0,0,0,0,0,0,0,0.0636471582781649,0,0,0,0,0,0,1.87227517805241,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr10:30151938..30151956,- | |short_description=p@chr10:30151938..30151956,- | ||
}} | }} |
Latest revision as of 13:04, 23 July 2015
Short description: | p@chr10:30151938..30151956, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr10:30151938..30151956, - |
Coexpression cluster: | C524_serous_endometrioid_endometrial_mesothelioma_gall_clear_papillotubular |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bladder cell | 1.48e-40 | 1 |
lower urinary tract cell | 1.48e-40 | 1 |
epithelial cell of gall bladder | 3.81e-21 | 2 |
crystallin accumulating cell | 3.79e-11 | 4 |
vertebrate lens cell | 3.79e-11 | 4 |
lens epithelial cell | 3.79e-11 | 4 |
epithelial cell of uterus | 5.54e-08 | 6 |
stromal cell of endometrium | 5.54e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
urinary bladder urothelium | 1.48e-40 | 1 |
wall of urinary bladder | 1.48e-40 | 1 |
mucosa of urinary bladder | 1.48e-40 | 1 |
urinary bladder | 4.66e-21 | 2 |
lower urinary tract | 4.66e-21 | 2 |
biliary system | 1.35e-18 | 9 |
biliary tree | 1.35e-18 | 9 |
biliary bud | 1.35e-18 | 9 |
gallbladder | 1.40e-14 | 3 |
gall bladder primordium | 1.40e-14 | 3 |
cuboidal epithelium | 3.79e-11 | 4 |
transparent eye structure | 3.79e-11 | 4 |
simple cuboidal epithelium | 3.79e-11 | 4 |
cranial placode | 3.79e-11 | 4 |
lens of camera-type eye | 3.79e-11 | 4 |
epithelium of lens | 3.79e-11 | 4 |
lens placode | 3.79e-11 | 4 |
lens vesicle | 3.79e-11 | 4 |
viscus | 7.42e-10 | 18 |
urothelium | 2.97e-09 | 5 |
transitional epithelium | 6.34e-08 | 6 |
bile duct | 6.78e-08 | 6 |
digestive system duct | 6.78e-08 | 6 |
epithelium of foregut-midgut junction | 2.35e-07 | 25 |
anatomical boundary | 2.35e-07 | 25 |
hepatobiliary system | 2.35e-07 | 25 |
foregut-midgut junction | 2.35e-07 | 25 |
septum transversum | 2.35e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
female reproductive endometrioid cancer | 5.54e-08 | 6 |