FFCP PHASE1:Hg19::chr12:52908501..52908527,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-199bp_to_CU687195_5end | |association_with_transcript=-199bp_to_CU687195_5end | ||
|cluster_id=chr12:52908501..52908527,+ | |||
|coexpression_cluster_id=C207 | |||
|description=CAGE_peak_8_at_CU687195_5end | |description=CAGE_peak_8_at_CU687195_5end | ||
|id=chr12:52908501..52908527,+ | |id=chr12:52908501..52908527,+ | ||
|ontology_enrichment_celltype=CL:0002076!3.50e-23!43;CL:0002159!1.91e-20!13;CL:0000066!2.74e-19!254;CL:0000223!1.41e-15!59;CL:0002368!3.40e-15!13;CL:0000244!5.72e-14!4;CL:0000731!5.72e-14!4;CL:0002251!2.57e-11!21;CL:0000076!3.27e-11!62;CL:0002166!6.40e-11!3;CL:0002077!1.80e-10!33;CL:0000240!6.63e-10!6;CL:0000311!6.63e-10!6;CL:0000079!6.63e-10!6;CL:0000237!6.63e-10!6;CL:0000036!6.63e-10!6;CL:0000357!6.63e-10!6;CL:0000114!6.63e-10!6;CL:0002327!1.44e-08!4;CL:0000575!1.79e-08!2;CL:0000362!3.36e-07!8;CL:0000312!4.63e-07!5 | |ontology_enrichment_celltype=CL:0002076!3.50e-23!43;CL:0002159!1.91e-20!13;CL:0000066!2.74e-19!254;CL:0000223!1.41e-15!59;CL:0002368!3.40e-15!13;CL:0000244!5.72e-14!4;CL:0000731!5.72e-14!4;CL:0002251!2.57e-11!21;CL:0000076!3.27e-11!62;CL:0002166!6.40e-11!3;CL:0002077!1.80e-10!33;CL:0000240!6.63e-10!6;CL:0000311!6.63e-10!6;CL:0000079!6.63e-10!6;CL:0000237!6.63e-10!6;CL:0000036!6.63e-10!6;CL:0000357!6.63e-10!6;CL:0000114!6.63e-10!6;CL:0002327!1.44e-08!4;CL:0000575!1.79e-08!2;CL:0000362!3.36e-07!8;CL:0000312!4.63e-07!5 | ||
|ontology_enrichment_celltype_v019=CL:0002159;9.23e-25;14!CL:0000240;5.99e-20;6!CL:0000311;5.99e-20;6!CL:0000079;5.99e-20;6!CL:0000237;5.99e-20;6!CL:0000244;1.25e-16;4!CL:0002327;1.25e-16;4!CL:0000731;1.25e-16;4!CL:0000575;4.78e-16;2!CL:0000312;6.92e-14;5!CL:0002077;3.96e-11;34!CL:0002577;1.31e-10;3!CL:0002328;1.55e-10;3!CL:0002166;2.49e-10;3!CL:0002623;2.49e-10;3!CL:0002336;8.45e-09;1!CL:0002261;8.45e-09;1!CL:0002252;8.45e-09;1!CL:0002170;8.45e-09;1!CL:0000362;6.28e-08;9!CL:0002076;3.05e-07;42 | |||
|ontology_enrichment_celltype_v019_2=CL:0002159,1.37e-24,14;CL:0000240,8.63e-20,6;CL:0000311,8.63e-20,6;CL:0000079,8.63e-20,6;CL:0000237,8.63e-20,6;CL:0000036,8.63e-20,6;CL:0000357,8.63e-20,6;CL:0000114,8.63e-20,6;CL:0002327,1.12e-16,4;CL:0000244,1.55e-16,4;CL:0000731,1.55e-16,4;CL:0000575,4.45e-16,2;CL:0000312,9.39e-14,5;CL:0002077,1.80e-12,34;CL:0000066,4.46e-12,253;CL:0002328,1.16e-10,3;CL:0002577,1.16e-10,3;CL:0002623,2.16e-10,3;CL:0002166,3.16e-10,3;CL:0002336,8.78e-09,1;CL:0002261,8.78e-09,1;CL:0002170,8.78e-09,1;CL:0002252,9.46e-09,1;CL:0000362,7.41e-08,9;CL:0002076,1.25e-07,42 | |||
|ontology_enrichment_development_v019=CL:0000357;5.99e-20;6!CL:0000114;5.99e-20;6!UBERON:0009143;2.29e-08;1 | |||
|ontology_enrichment_disease=DOID:1749!1.67e-16!14 | |||
|ontology_enrichment_disease_v019=DOID:3151;6.74e-09;1!DOID:3149;6.74e-09;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3151,7.01e-09,1;DOID:3149,7.01e-09,1 | |||
|ontology_enrichment_uberon=UBERON:0001004!6.42e-13!72;UBERON:0000365!3.50e-11!5;UBERON:0000166!6.95e-11!21;UBERON:0004119!7.36e-11!169;UBERON:0000925!7.36e-11!169;UBERON:0006595!7.36e-11!169;UBERON:0003729!9.93e-11!5;UBERON:0000165!9.47e-10!28;UBERON:0000930!9.47e-10!28;UBERON:0005910!2.55e-09!6;UBERON:0000161!5.88e-09!35;UBERON:0000065!1.24e-08!53;UBERON:0001911!1.44e-08!4;UBERON:0005333!1.44e-08!4;UBERON:0008425!1.44e-08!4;UBERON:0005311!1.44e-08!4;UBERON:0001708!2.75e-08!4;UBERON:0001704!2.75e-08!4;UBERON:0003102!3.89e-08!95;UBERON:0003343!1.15e-07!4;UBERON:0004785!1.15e-07!4;UBERON:0000974!1.67e-07!10;UBERON:0001444!2.02e-07!48;UBERON:0001042!2.24e-07!10;UBERON:0009145!2.24e-07!10 | |||
|ontology_enrichment_uberon_v019=UBERON:0001911;1.25e-16;4!UBERON:0000365;2.03e-13;5!UBERON:0005910;2.85e-11;6!UBERON:0001043;1.31e-10;3!UBERON:0004815;1.55e-10;3!UBERON:0002031;1.55e-10;3!UBERON:0000964;1.84e-08;4!UBERON:0010409;1.84e-08;4!UBERON:0005795;2.29e-08;1!UBERON:0001041;2.45e-08;14!UBERON:0001987;3.60e-08;4!UBERON:0001708;5.82e-08;4!UBERON:0008895;5.82e-08;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001911,1.12e-16,4;UBERON:0005333,1.12e-16,4;UBERON:0008425,1.12e-16,4;UBERON:0005311,1.12e-16,4;UBERON:0000365,2.41e-13,5;UBERON:0005910,3.29e-11,6;UBERON:0004815,1.16e-10,3;UBERON:0002031,1.16e-10,3;UBERON:0001043,1.48e-10,3;UBERON:0009143,1.48e-10,3;UBERON:0000076,1.34e-08,8;UBERON:0000964,1.78e-08,4;UBERON:0010409,1.78e-08,4;UBERON:0004348,1.78e-08,4;UBERON:0005427,1.78e-08,4;UBERON:0001987,3.29e-08,4;UBERON:0004340,3.29e-08,4;UBERON:0001708,6.95e-08,4;UBERON:0008895,6.95e-08,4;UBERON:0003102,6.33e-07,99;UBERON:0005157,8.95e-07,47;UBERON:0002185,9.98e-07,5 | |||
|phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,0,0,0,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.8072355126695,2.58827807116751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.64295288292542,8.52804218404188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.05265836499774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773043412653187,0.545492241181669,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.06076056011915,1.1240175325762,8.94707854463515,3.33318402570707,0,0,0,0,0,0,0,0,0,0,0,0,0,0.93733833986777,1.17587489739202,1.41775097242386,1.88072897675981,2.3250715081117,1.15014803749563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.63753085735511,0,1.5119514666484,0,0,0,0,0,0,0,0,0,0,0,0,0,0.802025881213139,0.920809889358963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,1.81813406897076,0.576570202095319,0.510450849978337,0.6069466851333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288666338176536,0.670302275535787,0,0,0.43050537267123,1.68471475667626,2.21715076768338,1.1486170010348,0,0,0,0,0,0,0,0,0,0,1.47024129588619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,0,0,0,0,0,0,0.422250816255987,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.455173793141999,0,0,0,0,0,0,0,0,0,0,0,0,1.25481369850743,0.153900517007594,0,0,0,0,0.638002319463839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0979923974143777,0.261177619741208,0,0,0,0,0,1.26085721434945,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.02521625119119,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308801447160972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.839277046316667,1.24415452006595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.88332946650923,0,0.550285795565037,0.115525666150338,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.24329698497822,1.87790324803345,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178553938605658,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129177819672012,0.186224142887574,0,0,0,0.653150243690884,0,0.202056159043763,0.502055437748735,0,0,0,0,0,0,0,1.62758471326295,0,0,0 | |phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,0,0,0,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.8072355126695,2.58827807116751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.64295288292542,8.52804218404188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.05265836499774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773043412653187,0.545492241181669,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.06076056011915,1.1240175325762,8.94707854463515,3.33318402570707,0,0,0,0,0,0,0,0,0,0,0,0,0,0.93733833986777,1.17587489739202,1.41775097242386,1.88072897675981,2.3250715081117,1.15014803749563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.63753085735511,0,1.5119514666484,0,0,0,0,0,0,0,0,0,0,0,0,0,0.802025881213139,0.920809889358963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,1.81813406897076,0.576570202095319,0.510450849978337,0.6069466851333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288666338176536,0.670302275535787,0,0,0.43050537267123,1.68471475667626,2.21715076768338,1.1486170010348,0,0,0,0,0,0,0,0,0,0,1.47024129588619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,0,0,0,0,0,0,0.422250816255987,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.455173793141999,0,0,0,0,0,0,0,0,0,0,0,0,1.25481369850743,0.153900517007594,0,0,0,0,0.638002319463839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0979923974143777,0.261177619741208,0,0,0,0,0,1.26085721434945,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.02521625119119,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308801447160972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.839277046316667,1.24415452006595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.88332946650923,0,0.550285795565037,0.115525666150338,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.24329698497822,1.87790324803345,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178553938605658,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129177819672012,0.186224142887574,0,0,0,0.653150243690884,0,0.202056159043763,0.502055437748735,0,0,0,0,0,0,0,1.62758471326295,0,0,0 | ||
|short_description=p8@CU687195 | |short_description=p8@CU687195 | ||
}} | }} |
Latest revision as of 09:34, 24 July 2015
Short description: | p8@CU687195 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_CU687195_5end |
Coexpression cluster: | C207_Corneal_Keratinocyte_Esophageal_Mammary_Bronchial_Urothelial_Sebocyte |
Association with transcript: | -199bp_to_CU687195_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
general ecto-epithelial cell | 1.37e-24 | 14 |
stratified squamous epithelial cell | 8.63e-20 | 6 |
keratin accumulating cell | 8.63e-20 | 6 |
stratified epithelial cell | 8.63e-20 | 6 |
keratinizing barrier epithelial cell | 8.63e-20 | 6 |
epithelial fate stem cell | 8.63e-20 | 6 |
stratified epithelial stem cell | 8.63e-20 | 6 |
surface ectodermal cell | 8.63e-20 | 6 |
mammary gland epithelial cell | 1.12e-16 | 4 |
transitional epithelial cell | 1.55e-16 | 4 |
urothelial cell | 1.55e-16 | 4 |
corneal epithelial cell | 4.45e-16 | 2 |
keratinocyte | 9.39e-14 | 5 |
ecto-epithelial cell | 1.80e-12 | 34 |
epithelial cell | 4.46e-12 | 253 |
bronchial epithelial cell | 1.16e-10 | 3 |
placental epithelial cell | 1.16e-10 | 3 |
acinar cell of salivary gland | 2.16e-10 | 3 |
epithelial cell of Malassez | 3.16e-10 | 3 |
buccal mucosa cell | 8.78e-09 | 1 |
endothelial cell of viscerocranial mucosa | 8.78e-09 | 1 |
keratinized cell of the oral mucosa | 8.78e-09 | 1 |
epithelial cell of esophagus | 9.46e-09 | 1 |
epidermal cell | 7.41e-08 | 9 |
endo-epithelial cell | 1.25e-07 | 42 |
Ontology term | p-value | n |
---|---|---|
mammary gland | 1.12e-16 | 4 |
mammary bud | 1.12e-16 | 4 |
mammary ridge | 1.12e-16 | 4 |
mammary placode | 1.12e-16 | 4 |
urothelium | 2.41e-13 | 5 |
transitional epithelium | 3.29e-11 | 6 |
lower respiratory tract epithelium | 1.16e-10 | 3 |
epithelium of bronchus | 1.16e-10 | 3 |
esophagus | 1.48e-10 | 3 |
esophageal region | 1.48e-10 | 3 |
external ectoderm | 1.34e-08 | 8 |
cornea | 1.78e-08 | 4 |
eye surface | 1.78e-08 | 4 |
optic eminence | 1.78e-08 | 4 |
corneal primordium | 1.78e-08 | 4 |
placenta | 3.29e-08 | 4 |
allantois | 3.29e-08 | 4 |
jaw skeleton | 6.95e-08 | 4 |
splanchnocranium | 6.95e-08 | 4 |
surface structure | 6.33e-07 | 99 |
epithelial fold | 8.95e-07 | 47 |
bronchus | 9.98e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
skin squamous cell carcinoma | 7.01e-09 | 1 |
keratoacanthoma | 7.01e-09 | 1 |