FFCP PHASE1:Hg19::chr12:52908527..52908528,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:52908527..52908528,- | |||
|description=CAGE_peak_at_chr12:52908527..52908528,- | |description=CAGE_peak_at_chr12:52908527..52908528,- | ||
|id=chr12:52908527..52908528,- | |id=chr12:52908527..52908528,- | ||
|ontology_enrichment_celltype=CL:0002076!2.11e-28!43;CL:0000223!1.26e-19!59;CL:0002251!7.70e-17!21;CL:0002623!8.76e-16!3;CL:0002368!3.34e-13!13;CL:0000066!3.92e-12!254;CL:0000076!4.63e-10!62;CL:0000622!1.19e-09!5;CL:0002159!9.64e-09!13;CL:0000154!4.17e-08!6;CL:0000240!8.63e-08!6;CL:0000311!8.63e-08!6;CL:0000079!8.63e-08!6;CL:0000237!8.63e-08!6;CL:0000036!8.63e-08!6;CL:0000357!8.63e-08!6;CL:0000114!8.63e-08!6;CL:0002328!1.35e-07!3;CL:0002621!3.18e-07!3;CL:0002231!3.72e-07!3;CL:0002166!7.76e-07!3 | |ontology_enrichment_celltype=CL:0002076!2.11e-28!43;CL:0000223!1.26e-19!59;CL:0002251!7.70e-17!21;CL:0002623!8.76e-16!3;CL:0002368!3.34e-13!13;CL:0000066!3.92e-12!254;CL:0000076!4.63e-10!62;CL:0000622!1.19e-09!5;CL:0002159!9.64e-09!13;CL:0000154!4.17e-08!6;CL:0000240!8.63e-08!6;CL:0000311!8.63e-08!6;CL:0000079!8.63e-08!6;CL:0000237!8.63e-08!6;CL:0000036!8.63e-08!6;CL:0000357!8.63e-08!6;CL:0000114!8.63e-08!6;CL:0002328!1.35e-07!3;CL:0002621!3.18e-07!3;CL:0002231!3.72e-07!3;CL:0002166!7.76e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0002368;3.79e-20;13!CL:0002623;7.42e-11;3!CL:0002328;1.04e-10;3!CL:0002076;9.53e-09;42!CL:0000622;5.08e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002368,3.91e-20,13;CL:0002076,2.90e-11,42;CL:0002623,6.73e-11,3;CL:0002328,8.99e-11,3;CL:0000223,2.77e-08,58;CL:0000622,4.79e-07,5 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:1749!2.98e-20!14 | |||
|ontology_enrichment_disease_v019=DOID:3151;9.98e-30;1!DOID:3149;9.98e-30;1!DOID:3451;1.33e-15;2!DOID:4159;1.33e-15;2!DOID:0060122;1.33e-15;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3151,1.33e-29,1;DOID:3149,1.33e-29,1;DOID:3451,1.54e-15,2;DOID:4159,1.54e-15,2;DOID:0060122,1.54e-15,2 | |||
|ontology_enrichment_uberon=UBERON:0000166!8.64e-17!21;UBERON:0001004!3.05e-15!72;UBERON:0000165!4.18e-15!28;UBERON:0000930!4.18e-15!28;UBERON:0000161!3.60e-14!35;UBERON:0001444!8.92e-10!48;UBERON:0004119!1.92e-09!169;UBERON:0000925!1.92e-09!169;UBERON:0006595!1.92e-09!169;UBERON:0003102!3.20e-09!95;UBERON:0003729!5.18e-09!5;UBERON:0001044!4.17e-08!6;UBERON:0003293!4.17e-08!6;UBERON:0003294!4.17e-08!6;UBERON:0010047!4.17e-08!6;UBERON:0000167!4.17e-08!6;UBERON:0003408!6.27e-08!10;UBERON:0004815!1.35e-07!3;UBERON:0002031!1.35e-07!3;UBERON:0000974!2.04e-07!10;UBERON:0001949!3.18e-07!3;UBERON:0000065!4.12e-07!53 | |||
|ontology_enrichment_uberon_v019=UBERON:0004815;1.04e-10;3!UBERON:0002031;1.04e-10;3!UBERON:0000014;1.82e-08;4!UBERON:0002185;6.21e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004815,8.99e-11,3;UBERON:0002031,8.99e-11,3;UBERON:0000014,1.96e-08,4;UBERON:0002185,5.70e-07,5 | |||
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|short_description=p@chr12:52908527..52908528,- | |short_description=p@chr12:52908527..52908528,- | ||
}} | }} |
Latest revision as of 09:34, 24 July 2015
Short description: | p@chr12:52908527..52908528, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:52908527..52908528, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
respiratory epithelial cell | 3.91e-20 | 13 |
endo-epithelial cell | 2.90e-11 | 42 |
acinar cell of salivary gland | 6.73e-11 | 3 |
bronchial epithelial cell | 8.99e-11 | 3 |
endodermal cell | 2.77e-08 | 58 |
acinar cell | 4.79e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
lower respiratory tract epithelium | 8.99e-11 | 3 |
epithelium of bronchus | 8.99e-11 | 3 |
zone of skin | 1.96e-08 | 4 |
bronchus | 5.70e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
skin squamous cell carcinoma | 1.33e-29 | 1 |
keratoacanthoma | 1.33e-29 | 1 |
skin carcinoma | 1.54e-15 | 2 |
skin cancer | 1.54e-15 | 2 |
integumentary system cancer | 1.54e-15 | 2 |