FFCP PHASE1:Hg19::chr12:55413751..55413765,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=58158 | |EntrezGene=58158 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=13802 | |HGNC=13802 | ||
|TSSclassifier=strong | |||
|UniProt=Q9HD90,Q8IW56 | |UniProt=Q9HD90,Q8IW56 | ||
|association_with_transcript=22bp_to_ENST00000242994,NM_021191,uc001sgp.3_5end | |association_with_transcript=22bp_to_ENST00000242994,NM_021191,uc001sgp.3_5end | ||
|cluster_id=chr12:55413751..55413765,+ | |||
|coexpression_cluster_id=C24 | |||
|description=CAGE_peak_1_at_NEUROD4_5end | |description=CAGE_peak_1_at_NEUROD4_5end | ||
|id=chr12:55413751..55413765,+ | |id=chr12:55413751..55413765,+ | ||
|ontology_enrichment_celltype=CL:0000047!2.28e-12!8;CL:0000540!7.14e-12!6;CL:0000031!7.14e-12!6;CL:0000404!7.14e-12!6;CL:0002322!8.76e-09!5;CL:0002319!1.50e-08!25 | |ontology_enrichment_celltype=CL:0000047!2.28e-12!8;CL:0000540!7.14e-12!6;CL:0000031!7.14e-12!6;CL:0000404!7.14e-12!6;CL:0002322!8.76e-09!5;CL:0002319!1.50e-08!25 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3119;3.70e-10;14 | |||
|ontology_enrichment_disease_v019_2=DOID:3119,3.93e-10,14 | |||
|ontology_enrichment_uberon=UBERON:0005743!1.98e-30!86;UBERON:0001017!4.21e-30!82;UBERON:0000073!1.06e-28!94;UBERON:0001016!1.06e-28!94;UBERON:0002780!1.64e-24!41;UBERON:0001890!1.64e-24!41;UBERON:0006240!1.64e-24!41;UBERON:0001049!5.72e-24!57;UBERON:0005068!5.72e-24!57;UBERON:0006241!5.72e-24!57;UBERON:0007135!5.72e-24!57;UBERON:0003080!8.31e-24!42;UBERON:0000956!2.00e-20!25;UBERON:0000203!2.00e-20!25;UBERON:0003056!2.37e-20!61;UBERON:0003075!5.41e-20!86;UBERON:0007284!5.41e-20!86;UBERON:0002616!5.74e-19!59;UBERON:0002020!7.42e-19!34;UBERON:0003528!7.42e-19!34;UBERON:0002346!9.04e-19!90;UBERON:0001893!1.24e-18!34;UBERON:0000955!3.04e-18!69;UBERON:0006238!3.04e-18!69;UBERON:0001869!1.73e-17!32;UBERON:0002619!1.80e-17!22;UBERON:0002791!5.01e-17!33;UBERON:0001950!1.47e-16!20;UBERON:0004121!4.14e-15!169;UBERON:0000924!1.53e-14!173;UBERON:0006601!1.53e-14!173;UBERON:0003296!2.09e-13!4;UBERON:0010133!2.09e-13!4;UBERON:0000153!1.61e-10!129;UBERON:0007811!1.61e-10!129;UBERON:0000033!1.89e-10!123;UBERON:0002021!2.33e-09!5;UBERON:0001872!3.25e-09!5;UBERON:0001894!1.31e-07!7;UBERON:0006222!1.31e-07!7;UBERON:0001905!1.42e-07!2;UBERON:0002757!1.42e-07!2;UBERON:0010134!1.42e-07!2;UBERON:0002784!1.42e-07!2;UBERON:0005408!1.42e-07!2;UBERON:0001899!1.42e-07!2;UBERON:0000007!1.66e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0003296;1.97e-36;4!UBERON:0010133;1.97e-36;4!UBERON:0001894;5.92e-21;7!UBERON:0001905;3.13e-19;2!UBERON:0002757;3.13e-19;2!UBERON:0010134;3.13e-19;2!UBERON:0005408;3.13e-19;2!UBERON:0001899;3.13e-19;2!UBERON:0000007;4.91e-19;2!UBERON:0002784;4.45e-10;4!UBERON:0002780;1.17e-07;41!UBERON:0001890;1.17e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003296,1.97e-36,4;UBERON:0010133,1.97e-36,4;UBERON:0001894,5.92e-21,7;UBERON:0006222,5.92e-21,7;UBERON:0001905,3.13e-19,2;UBERON:0002757,3.13e-19,2;UBERON:0010134,3.13e-19,2;UBERON:0005408,3.13e-19,2;UBERON:0001899,3.13e-19,2;UBERON:0000007,4.91e-19,2;UBERON:0001016,1.21e-11,89;UBERON:0001017,6.53e-11,81;UBERON:0003056,3.45e-10,61;UBERON:0002784,4.45e-10,4;UBERON:0002780,1.55e-09,41;UBERON:0001890,1.55e-09,41;UBERON:0003080,1.55e-09,41;UBERON:0006240,1.55e-09,41;UBERON:0000073,2.33e-09,53;UBERON:0002616,2.33e-09,53;UBERON:0003075,5.32e-09,82;UBERON:0007284,5.32e-09,82;UBERON:0001049,8.20e-09,56;UBERON:0005068,8.20e-09,56;UBERON:0006241,8.20e-09,56;UBERON:0007135,8.20e-09,56;UBERON:0002346,1.62e-08,86;UBERON:0004121,2.05e-07,171;UBERON:0000924,2.05e-07,171;UBERON:0006601,2.05e-07,171;UBERON:0000955,5.53e-07,68;UBERON:0006238,5.53e-07,68;UBERON:0010371,8.57e-07,104 | |||
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| ||
|short_description=p1@NEUROD4 | |short_description=p1@NEUROD4 | ||
}} | }} |
Latest revision as of 07:26, 19 September 2015
Short description: | p1@NEUROD4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_NEUROD4_5end |
Coexpression cluster: | C24_pineal_eye_retina_retinoblastoma_medulloblastoma_small_cerebral |
Association with transcript: | 22bp_to_ENST00000242994, NM_021191, uc001sgp.3_5end |
EntrezGene: | NEUROD4 |
HGNC: | 13802 |
UniProt: | Q9HD90Q8IW56 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
gland of diencephalon | 1.97e-36 | 4 |
neuroendocrine gland | 1.97e-36 | 4 |
diencephalon | 5.92e-21 | 7 |
future diencephalon | 5.92e-21 | 7 |
pineal body | 3.13e-19 | 2 |
regional part of epithalamus | 3.13e-19 | 2 |
secretory circumventricular organ | 3.13e-19 | 2 |
circumventricular organ | 3.13e-19 | 2 |
epithalamus | 3.13e-19 | 2 |
pituitary gland | 4.91e-19 | 2 |
nervous system | 1.21e-11 | 89 |
central nervous system | 6.53e-11 | 81 |
pre-chordal neural plate | 3.45e-10 | 61 |
regional part of diencephalon | 4.45e-10 | 4 |
regional part of forebrain | 1.55e-09 | 41 |
forebrain | 1.55e-09 | 41 |
anterior neural tube | 1.55e-09 | 41 |
future forebrain | 1.55e-09 | 41 |
regional part of nervous system | 2.33e-09 | 53 |
regional part of brain | 2.33e-09 | 53 |
neural plate | 5.32e-09 | 82 |
presumptive neural plate | 5.32e-09 | 82 |
neural tube | 8.20e-09 | 56 |
neural rod | 8.20e-09 | 56 |
future spinal cord | 8.20e-09 | 56 |
neural keel | 8.20e-09 | 56 |
neurectoderm | 1.62e-08 | 86 |
ectoderm-derived structure | 2.05e-07 | 171 |
ectoderm | 2.05e-07 | 171 |
presumptive ectoderm | 2.05e-07 | 171 |
brain | 5.53e-07 | 68 |
future brain | 5.53e-07 | 68 |
ecto-epithelium | 8.57e-07 | 104 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system cancer | 3.93e-10 | 14 |