FFCP PHASE1:Mm9::chr11:103217008..103217021,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene= | |EntrezGene= | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=12 | |||
|TSSclassifier=NA | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENSMUST00000123812,uc007lue.1_5end | |association_with_transcript=0bp_to_ENSMUST00000123812,uc007lue.1_5end | ||
|cluster_id=chr11:103217008..103217021,+ | |||
|description=CAGE_peak_1_at_ENSMUST00000123812_5end,CAGE_peak_1_at_uc007lue.1_5end | |description=CAGE_peak_1_at_ENSMUST00000123812_5end,CAGE_peak_1_at_uc007lue.1_5end | ||
|id=chr11:103217008..103217021,+ | |id=chr11:103217008..103217021,+ | ||
|ontology_enrichment_celltype=CL:0002563!7.21e-12!9;CL:0002251!7.21e-12!9;CL:0000239!1.66e-08!6;CL:0000677!1.66e-08!6;CL:0000212!1.66e-08!6;CL:0000584!1.66e-08!6;CL:0000075!4.09e-07!7 | |ontology_enrichment_celltype=CL:0002563!7.21e-12!9;CL:0002251!7.21e-12!9;CL:0000239!1.66e-08!6;CL:0000677!1.66e-08!6;CL:0000212!1.66e-08!6;CL:0000584!1.66e-08!6;CL:0000075!4.09e-07!7 | ||
|ontology_enrichment_celltype_v019_2=CL:0002563,8.59e-21,9;CL:0002251,8.59e-21,9;CL:0000239,1.62e-14,6;CL:0000677,1.62e-14,6;CL:0000584,1.62e-14,6;CL:0000075,2.40e-12,7;CL:0002076,8.26e-12,15;CL:0000066,7.43e-10,25;CL:0000223,1.90e-08,20;CL:0002250,7.56e-08,3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!4.33e-26!43;UBERON:0005409!1.51e-22!59;UBERON:0000344!2.12e-19!15;UBERON:0001242!6.02e-17!13;UBERON:0000060!6.02e-17!13;UBERON:0001262!6.02e-17!13;UBERON:0004786!6.02e-17!13;UBERON:0004923!4.63e-13!24;UBERON:0003350!7.21e-12!9;UBERON:0004808!7.21e-12!9;UBERON:0001277!7.21e-12!9;UBERON:0000485!2.91e-09!11;UBERON:0004119!4.92e-07!130;UBERON:0000925!4.92e-07!130;UBERON:0006595!4.92e-07!130;UBERON:0001007!8.55e-07!128;UBERON:0001555!8.55e-07!128;UBERON:0007026!8.55e-07!128;UBERON:0002113!9.42e-07!14;UBERON:0003918!9.42e-07!14;UBERON:0005095!9.42e-07!14;UBERON:0007687!9.42e-07!14 | |ontology_enrichment_uberon=UBERON:0000160!4.33e-26!43;UBERON:0005409!1.51e-22!59;UBERON:0000344!2.12e-19!15;UBERON:0001242!6.02e-17!13;UBERON:0000060!6.02e-17!13;UBERON:0001262!6.02e-17!13;UBERON:0004786!6.02e-17!13;UBERON:0004923!4.63e-13!24;UBERON:0003350!7.21e-12!9;UBERON:0004808!7.21e-12!9;UBERON:0001277!7.21e-12!9;UBERON:0000485!2.91e-09!11;UBERON:0004119!4.92e-07!130;UBERON:0000925!4.92e-07!130;UBERON:0006595!4.92e-07!130;UBERON:0001007!8.55e-07!128;UBERON:0001555!8.55e-07!128;UBERON:0007026!8.55e-07!128;UBERON:0002113!9.42e-07!14;UBERON:0003918!9.42e-07!14;UBERON:0005095!9.42e-07!14;UBERON:0007687!9.42e-07!14 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,4.40e-58,31;UBERON:0005409,3.32e-36,47;UBERON:0000344,6.64e-35,15;UBERON:0001242,2.65e-30,13;UBERON:0001262,2.65e-30,13;UBERON:0004786,2.65e-30,13;UBERON:0003350,8.59e-21,9;UBERON:0004808,8.59e-21,9;UBERON:0001277,8.59e-21,9;UBERON:0004923,1.70e-20,24;UBERON:0000485,1.04e-16,11;UBERON:0001007,2.90e-13,116;UBERON:0001555,2.90e-13,116;UBERON:0007026,2.90e-13,116;UBERON:0004119,6.29e-13,118;UBERON:0000925,6.29e-13,118;UBERON:0006595,6.29e-13,118;UBERON:0004921,2.98e-11,114;UBERON:0002108,8.36e-11,4;UBERON:0000331,2.33e-08,3;UBERON:0002116,2.33e-08,3;UBERON:0001204,2.33e-08,3;UBERON:0001168,2.33e-08,3 | |||
|phase1_expression=0,3.83872948403297,3.18499467572675,4.83942738090928,5.00895729946347,1.17515490338323,1.40167584357315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.51983330145495,3.21172993494038,0.57423196411502,4.73838195774982,2.80112602491656,9.31114755336232,5.29263272495855,1.10865255327652,0,0,0,2.59966457776147,1.99481574430191,3.26670970019791,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285650984403804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.702222100658759,0,0,0,0,0,0,0,0,0,0,0.45673551887624,0,0,0,0,0,0,0,0,0.247194967734374,0,0,0,0,0,1.86391761218122,0,0,5.8755122697976,0,0,0,0,0,0,0,0,0,0,0.101839363850316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.58214470653014,3.43785736662608,0.426576501070468,0.232236671860439,1.15980715189884,0.80673409849337,1.11189021922435,1.14135375667535,5.69434873853414,3.95277491337626,2.01068167040216,1.39269530428806,3.31438948102504,2.69645822596266,5.18731319699266,6.17337947088538,0.189667900953082,0.228497025219458,0,0.610953983535943,1.55161989734101,0.49095073923223,1.3279672796094,2.36176236767363,2.82597710114475,1.72756029490521,0,0.166845105716094,0,0,0,0,0,0,0,0.274561413188081,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258428293168221,0,0,0,0,0,0,0,0,0.214337035031592,0,0.356737635204141,0,0.304464949114599,0,0.21183207086382,0,0,0,0,0,0.164140899745061,5.24665505933731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.418176592028937,0.436725127492355,0.134864346384821,0,0.26175594198403,0.90730481304255,0,0,0.149516546043979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183843508450014,0,0,0,0,0.25347929989024,0.188626341386076,0.0936415074698824,0.0640251524048693,0.114870937911227,0,0.115884325944855,0.192909220463705,0.412085900803307,0,0.342869252385415,0,0,0,0,0.169229215783353,0,0,0,0,0.237270036248348,0.0985044823755635,0,0,0.192906610981141,0,0,0,0,0,0 | |phase1_expression=0,3.83872948403297,3.18499467572675,4.83942738090928,5.00895729946347,1.17515490338323,1.40167584357315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.51983330145495,3.21172993494038,0.57423196411502,4.73838195774982,2.80112602491656,9.31114755336232,5.29263272495855,1.10865255327652,0,0,0,2.59966457776147,1.99481574430191,3.26670970019791,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285650984403804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.702222100658759,0,0,0,0,0,0,0,0,0,0,0.45673551887624,0,0,0,0,0,0,0,0,0.247194967734374,0,0,0,0,0,1.86391761218122,0,0,5.8755122697976,0,0,0,0,0,0,0,0,0,0,0.101839363850316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.58214470653014,3.43785736662608,0.426576501070468,0.232236671860439,1.15980715189884,0.80673409849337,1.11189021922435,1.14135375667535,5.69434873853414,3.95277491337626,2.01068167040216,1.39269530428806,3.31438948102504,2.69645822596266,5.18731319699266,6.17337947088538,0.189667900953082,0.228497025219458,0,0.610953983535943,1.55161989734101,0.49095073923223,1.3279672796094,2.36176236767363,2.82597710114475,1.72756029490521,0,0.166845105716094,0,0,0,0,0,0,0,0.274561413188081,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258428293168221,0,0,0,0,0,0,0,0,0.214337035031592,0,0.356737635204141,0,0.304464949114599,0,0.21183207086382,0,0,0,0,0,0.164140899745061,5.24665505933731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.418176592028937,0.436725127492355,0.134864346384821,0,0.26175594198403,0.90730481304255,0,0,0.149516546043979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183843508450014,0,0,0,0,0.25347929989024,0.188626341386076,0.0936415074698824,0.0640251524048693,0.114870937911227,0,0.115884325944855,0.192909220463705,0.412085900803307,0,0.342869252385415,0,0,0,0,0.169229215783353,0,0,0,0,0.237270036248348,0.0985044823755635,0,0,0.192906610981141,0,0,0,0,0,0 | ||
|short_description=p1@ENSMUST00000123812,p1@uc007lue.1 | |short_description=p1@ENSMUST00000123812,p1@uc007lue.1 | ||
}} | }} |
Latest revision as of 06:23, 5 August 2015
Short description: | p1@ENSMUST00000123812, p1@uc007lue.1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_ENSMUST00000123812_5end, CAGE_peak_1_at_uc007lue.1_5end |
Coexpression cluster: | MCL_coexpression_mm9:12 |
Association with transcript: | 0bp_to_ENSMUST00000123812, uc007lue.1_5end |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 8.59e-21 | 9 |
epithelial cell of alimentary canal | 8.59e-21 | 9 |
brush border epithelial cell | 1.62e-14 | 6 |
gut absorptive cell | 1.62e-14 | 6 |
enterocyte | 1.62e-14 | 6 |
columnar/cuboidal epithelial cell | 2.40e-12 | 7 |
endo-epithelial cell | 8.26e-12 | 15 |
epithelial cell | 7.43e-10 | 25 |
endodermal cell | 1.90e-08 | 20 |
intestinal crypt stem cell | 7.56e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
intestine | 4.40e-58 | 31 |
gastrointestinal system | 3.32e-36 | 47 |
mucosa | 6.64e-35 | 15 |
intestinal mucosa | 2.65e-30 | 13 |
wall of intestine | 2.65e-30 | 13 |
gastrointestinal system mucosa | 2.65e-30 | 13 |
epithelium of mucosa | 8.59e-21 | 9 |
gastrointestinal system epithelium | 8.59e-21 | 9 |
intestinal epithelium | 8.59e-21 | 9 |
organ component layer | 1.70e-20 | 24 |
simple columnar epithelium | 1.04e-16 | 11 |
digestive system | 2.90e-13 | 116 |
digestive tract | 2.90e-13 | 116 |
primitive gut | 2.90e-13 | 116 |
endoderm-derived structure | 6.29e-13 | 118 |
endoderm | 6.29e-13 | 118 |
presumptive endoderm | 6.29e-13 | 118 |
subdivision of digestive tract | 2.98e-11 | 114 |
small intestine | 8.36e-11 | 4 |
ileal mucosa | 2.33e-08 | 3 |
ileum | 2.33e-08 | 3 |
mucosa of small intestine | 2.33e-08 | 3 |
wall of small intestine | 2.33e-08 | 3 |