FFCP PHASE1:Mm9::chr12:112666837..112666863,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(3 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=58 | |||
|TSSclassifier=NA | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:112666837..112666863,+ | |||
|description=CAGE_peak_at_chr12:112666837..112666863,+ | |description=CAGE_peak_at_chr12:112666837..112666863,+ | ||
|id=chr12:112666837..112666863,+ | |id=chr12:112666837..112666863,+ | ||
|ontology_enrichment_celltype=CL:0002563!6.74e-18!9;CL:0002251!6.74e-18!9;CL:0000239!4.72e-13!6;CL:0000677!4.72e-13!6;CL:0000212!4.72e-13!6;CL:0000584!4.72e-13!6;CL:0002076!4.08e-12!15;CL:0000066!1.14e-11!25;CL:0000075!4.74e-11!7;CL:0000223!1.59e-08!20;CL:0000473!9.41e-08!3;CL:0000627!9.41e-08!3;CL:0000682!9.41e-08!3 | |ontology_enrichment_celltype=CL:0002563!6.74e-18!9;CL:0002251!6.74e-18!9;CL:0000239!4.72e-13!6;CL:0000677!4.72e-13!6;CL:0000212!4.72e-13!6;CL:0000584!4.72e-13!6;CL:0002076!4.08e-12!15;CL:0000066!1.14e-11!25;CL:0000075!4.74e-11!7;CL:0000223!1.59e-08!20;CL:0000473!9.41e-08!3;CL:0000627!9.41e-08!3;CL:0000682!9.41e-08!3 | ||
|ontology_enrichment_celltype_v019_2=CL:0002563,1.67e-22,9;CL:0002251,1.67e-22,9;CL:0000239,4.45e-20,6;CL:0000677,4.45e-20,6;CL:0000584,4.45e-20,6;CL:0000075,3.99e-17,7;CL:0000066,1.93e-14,25;CL:0002076,5.14e-13,15;CL:0000682,1.53e-11,3;CL:0000223,1.88e-09,20 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!1.49e-30!43;UBERON:0000344!1.52e-29!15;UBERON:0001242!1.28e-25!13;UBERON:0000060!1.28e-25!13;UBERON:0001262!1.28e-25!13;UBERON:0004786!1.28e-25!13;UBERON:0005409!4.87e-22!59;UBERON:0003350!6.74e-18!9;UBERON:0004808!6.74e-18!9;UBERON:0001277!6.74e-18!9;UBERON:0004923!6.42e-17!24;UBERON:0000485!2.82e-14!11;UBERON:0001007!2.69e-09!128;UBERON:0001555!2.69e-09!128;UBERON:0007026!2.69e-09!128;UBERON:0004119!4.97e-09!130;UBERON:0000925!4.97e-09!130;UBERON:0006595!4.97e-09!130;UBERON:0004921!8.34e-08!126;UBERON:0004185!8.34e-08!126;UBERON:0000331!2.13e-07!3;UBERON:0002116!2.13e-07!3;UBERON:0001204!2.13e-07!3;UBERON:0001168!2.13e-07!3 | |ontology_enrichment_uberon=UBERON:0000160!1.49e-30!43;UBERON:0000344!1.52e-29!15;UBERON:0001242!1.28e-25!13;UBERON:0000060!1.28e-25!13;UBERON:0001262!1.28e-25!13;UBERON:0004786!1.28e-25!13;UBERON:0005409!4.87e-22!59;UBERON:0003350!6.74e-18!9;UBERON:0004808!6.74e-18!9;UBERON:0001277!6.74e-18!9;UBERON:0004923!6.42e-17!24;UBERON:0000485!2.82e-14!11;UBERON:0001007!2.69e-09!128;UBERON:0001555!2.69e-09!128;UBERON:0007026!2.69e-09!128;UBERON:0004119!4.97e-09!130;UBERON:0000925!4.97e-09!130;UBERON:0006595!4.97e-09!130;UBERON:0004921!8.34e-08!126;UBERON:0004185!8.34e-08!126;UBERON:0000331!2.13e-07!3;UBERON:0002116!2.13e-07!3;UBERON:0001204!2.13e-07!3;UBERON:0001168!2.13e-07!3 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.05e-45,31;UBERON:0000344,4.08e-41,15;UBERON:0001242,7.96e-35,13;UBERON:0001262,7.96e-35,13;UBERON:0004786,7.96e-35,13;UBERON:0005409,1.35e-31,47;UBERON:0004923,1.24e-24,24;UBERON:0003350,1.67e-22,9;UBERON:0004808,1.67e-22,9;UBERON:0001277,1.67e-22,9;UBERON:0000485,3.41e-18,11;UBERON:0002108,1.70e-13,4;UBERON:0001007,9.41e-13,116;UBERON:0001555,9.41e-13,116;UBERON:0007026,9.41e-13,116;UBERON:0004119,1.86e-12,118;UBERON:0000925,1.86e-12,118;UBERON:0006595,1.86e-12,118;UBERON:0000331,5.66e-11,3;UBERON:0002116,5.66e-11,3;UBERON:0001204,5.66e-11,3;UBERON:0001168,5.66e-11,3;UBERON:0004921,1.95e-10,114;UBERON:0001962,9.27e-08,2;UBERON:0001961,9.27e-08,2;UBERON:0001744,9.27e-08,2;UBERON:0001155,2.83e-07,2;UBERON:0000059,2.83e-07,2 | |||
|phase1_expression=0,16.7508195666893,18.1999695755814,9.0739263392049,5.50985302940982,9.40123922706583,10.9797941079897,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,7.35965144849671,13.3057383018959,25.8404383851759,19.8150518233174,25.210134224249,11.2113817479261,6.30075324399827,20.399206980288,0,0,0,0.866554859253824,2.32728503501889,1.22501613757421,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.421333260395256,0,0,0,0,0,0,0,0,0,0.505524445014783,0.34255163915718,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.72783522436244,0,0,2.55457055208591,0,0,0,0,0,0,0,0,0,0,0.101839363850316,0.124406970610093,0.758168275301024,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.96502539580558,1.85115396664481,0,0,0,0.201683524623343,0,0.570676878337677,3.32170343081158,1.15289268306808,1.25667604400135,0.596869416123452,1.16978452271472,0.898819408654221,1.08069024937347,2.19055400579804,0,0,0,0,0,0,0,0,0,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.494910368917606,0,0,0,0,0,0,0.258428293168221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1659233465194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.8146096260851,0,0,0,0,0,0,0,0.117357238645754,0,0,0,0,0,0,0.102710957164827,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.187682475451182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188626341386076,0,0,0,0,0,0,0,0,0,0.177475806159338,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,16.7508195666893,18.1999695755814,9.0739263392049,5.50985302940982,9.40123922706583,10.9797941079897,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,7.35965144849671,13.3057383018959,25.8404383851759,19.8150518233174,25.210134224249,11.2113817479261,6.30075324399827,20.399206980288,0,0,0,0.866554859253824,2.32728503501889,1.22501613757421,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.421333260395256,0,0,0,0,0,0,0,0,0,0.505524445014783,0.34255163915718,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.72783522436244,0,0,2.55457055208591,0,0,0,0,0,0,0,0,0,0,0.101839363850316,0.124406970610093,0.758168275301024,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.96502539580558,1.85115396664481,0,0,0,0.201683524623343,0,0.570676878337677,3.32170343081158,1.15289268306808,1.25667604400135,0.596869416123452,1.16978452271472,0.898819408654221,1.08069024937347,2.19055400579804,0,0,0,0,0,0,0,0,0,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.494910368917606,0,0,0,0,0,0,0.258428293168221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1659233465194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.8146096260851,0,0,0,0,0,0,0,0.117357238645754,0,0,0,0,0,0,0.102710957164827,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.187682475451182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188626341386076,0,0,0,0,0,0,0,0,0,0.177475806159338,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr12:112666837..112666863,+ | |short_description=p@chr12:112666837..112666863,+ | ||
}} | }} |
Latest revision as of 18:11, 4 August 2015
Short description: | p@chr12:112666837..112666863, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr12:112666837..112666863, + |
Coexpression cluster: | MCL_coexpression_mm9:58 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 1.67e-22 | 9 |
epithelial cell of alimentary canal | 1.67e-22 | 9 |
brush border epithelial cell | 4.45e-20 | 6 |
gut absorptive cell | 4.45e-20 | 6 |
enterocyte | 4.45e-20 | 6 |
columnar/cuboidal epithelial cell | 3.99e-17 | 7 |
epithelial cell | 1.93e-14 | 25 |
endo-epithelial cell | 5.14e-13 | 15 |
M cell of gut | 1.53e-11 | 3 |
endodermal cell | 1.88e-09 | 20 |
Ontology term | p-value | n |
---|---|---|
intestine | 1.05e-45 | 31 |
mucosa | 4.08e-41 | 15 |
intestinal mucosa | 7.96e-35 | 13 |
wall of intestine | 7.96e-35 | 13 |
gastrointestinal system mucosa | 7.96e-35 | 13 |
gastrointestinal system | 1.35e-31 | 47 |
organ component layer | 1.24e-24 | 24 |
epithelium of mucosa | 1.67e-22 | 9 |
gastrointestinal system epithelium | 1.67e-22 | 9 |
intestinal epithelium | 1.67e-22 | 9 |
simple columnar epithelium | 3.41e-18 | 11 |
small intestine | 1.70e-13 | 4 |
digestive system | 9.41e-13 | 116 |
digestive tract | 9.41e-13 | 116 |
primitive gut | 9.41e-13 | 116 |
endoderm-derived structure | 1.86e-12 | 118 |
endoderm | 1.86e-12 | 118 |
presumptive endoderm | 1.86e-12 | 118 |
ileal mucosa | 5.66e-11 | 3 |
ileum | 5.66e-11 | 3 |
mucosa of small intestine | 5.66e-11 | 3 |
wall of small intestine | 5.66e-11 | 3 |
subdivision of digestive tract | 1.95e-10 | 114 |
gut-associated lymphoid tissue | 9.27e-08 | 2 |
mucosa-associated lymphoid tissue | 9.27e-08 | 2 |
lymphoid tissue | 9.27e-08 | 2 |
colon | 2.83e-07 | 2 |
large intestine | 2.83e-07 | 2 |