Personal tools

CL:0002453: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
(Created page with "{{CL |id=CL:0002453 |name=oligodendrocyte precursor cell |namespace=cell |def="The cell type from which oligodendrocytes develop. This cell originates from multiple struct...")
 
No edit summary
 
(4 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{CL
{{CL
|id=CL:0002453
|alt_id=
|name=oligodendrocyte precursor cell
|namespace=cell
|def="The cell type from which oligodendrocytes develop. This cell originates from multiple structures within the developing brain including the medial ganglion eminence and the lateral ganglionic eminence. These cells migrate throughout the central nervous system and persist into adulthood where they play an important role in remyelination of injured neurons." [GOC:tfm, PMID:20142420]
|xref=
|is_a=CL:0000123
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2010-11-10T02:51:34Z
|def="The cell type from which oligodendrocytes develop. This cell originates from multiple structures within the developing brain including the medial ganglion eminence and the lateral ganglionic eminence. These cells migrate throughout the central nervous system and persist into adulthood where they play an important role in remyelination of injured neurons." [GOC:tfm, PMID:20142420]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=CL:0000339
|develops_from=CL:0000339
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002453
|is_a=CL:0000123
|is_obsolete=
|located_in=
|located_in=
|name=oligodendrocyte precursor cell
|namespace=FANTOM
|obo_creation_date=2010-11-10T02:51:34Z
|part_of=UBERON:0001017
|part_of=UBERON:0001017
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|subset=
|synonym=
|union_of=
|xref=
}}
}}

Latest revision as of 16:43, 12 September 2014

Name:oligodendrocyte precursor cell
Namespace:FANTOM
Definition:"The cell type from which oligodendrocytes develop. This cell originates from multiple structures within the developing brain including the medial ganglion eminence and the lateral ganglionic eminence. These cells migrate throughout the central nervous system and persist into adulthood where they play an important role in remyelination of injured neurons." [GOC:tfm, PMID:20142420]
Created by:tmeehan
Creation date:2010-11-10T02:51:34Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000123(neuron associated cell (sensu Vertebrata))
develops_from:CL:0000339(glioblast (sensu Vertebrata))
part_of:UBERON:0001017(central nervous system)



Children


is a:FF:0000126 (oligospheres)
derives from:FF:0000125 (human oligodendrocyte precursor sample)
develops from:CL:0000128 (oligodendrocyte),CL:0000129 (microglial cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002453 (oligodendrocyte precursor cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
6.94e-140FFCP PHASE2:Hg19::chr4:169553987..169553999,+#_e7eabaccb478cfea64a581a01bc38f17p@chr4:169553987..169553999, +
6.94e-140FFCP PHASE1:Hg19::chr4:169553987..169553999,+#_e7eabaccb478cfea64a581a01bc38f17p@chr4:169553987..169553999, +
1.28e-84FFCP PHASE2:Hg19::chr9:122602283..122602290,-#_0e3ab2105242dc1fa8ee0939f57ed9edp@chr9:122602283..122602290, -
1.28e-84FFCP PHASE1:Hg19::chr9:122602283..122602290,-#_0e3ab2105242dc1fa8ee0939f57ed9edp@chr9:122602283..122602290, -
6.32e-78FFCP PHASE2:Hg19::chr2:48919725..48919761,+#_8e9286e959d389bf93e97830a17457d9p@chr2:48919725..48919761, +
6.32e-78FFCP PHASE1:Hg19::chr2:48919725..48919761,+#_8e9286e959d389bf93e97830a17457d9p@chr2:48919725..48919761, +
8.34e-78FFCP PHASE2:Hg19::chr2:48919688..48919703,+#_454ff8efdcf70b07c7d63aff4fd37c33p@chr2:48919688..48919703, +
8.34e-78FFCP PHASE1:Hg19::chr2:48919688..48919703,+#_454ff8efdcf70b07c7d63aff4fd37c33p@chr2:48919688..48919703, +
7.4e-76FFCP PHASE2:Mm9::chr1:72873192..72873206,+#_cbacd791623a31a52f5910c3d2c3d7f2p@chr1:72873192..72873206, +
7.4e-76FFCP PHASE1:Mm9::chr1:72873192..72873206,+#_cbacd791623a31a52f5910c3d2c3d7f2p@chr1:72873192..72873206, +
7.4e-76FFCP PHASE1:Mm9::chr8:28132545..28132551,+#_cbacd791623a31a52f5910c3d2c3d7f2p@chr8:28132545..28132551, +
7.4e-76FFCP PHASE2:Mm9::chr8:28132545..28132551,+#_cbacd791623a31a52f5910c3d2c3d7f2p@chr8:28132545..28132551, +
1.79e-75FFCP PHASE1:Hg19::chr11:68808268..68808276,-#_086dd10782f36838d25e2eef723c25adp@chr11:68808268..68808276, -
1.79e-75FFCP PHASE2:Hg19::chr9:127025189..127025200,+#_086dd10782f36838d25e2eef723c25adp1@ENST00000437461
1.79e-75FFCP PHASE1:Hg19::chr9:127025189..127025200,+#_086dd10782f36838d25e2eef723c25adp1@ENST00000437461
1.79e-75FFCP PHASE2:Hg19::chr11:68808268..68808276,-#_086dd10782f36838d25e2eef723c25adp@chr11:68808268..68808276, -
2.17e-75FFCP PHASE2:Hg19::chr13:99349888..99349893,+#_f0948ce0ffa620ee8fa6fa57682bebedp@chr13:99349888..99349893, +
2.17e-75FFCP PHASE1:Hg19::chr13:99349888..99349893,+#_f0948ce0ffa620ee8fa6fa57682bebedp@chr13:99349888..99349893, +
2.83e-68FFCP PHASE2:Hg19::chr22:30176932..30176938,+#_fd317a91c382229ffdc2b36fd3518e37p@chr22:30176932..30176938, +
2.83e-68FFCP PHASE1:Hg19::chr22:30176932..30176938,+#_fd317a91c382229ffdc2b36fd3518e37p@chr22:30176932..30176938, +
9.18e-67FFCP PHASE2:Mm9::chr19:8788816..8788826,-#_83ad9338cddacad5bd63856d88ae2ec2p14@Slc3a2
9.18e-67FFCP PHASE1:Mm9::chr19:8788816..8788826,-#_83ad9338cddacad5bd63856d88ae2ec2p14@Slc3a2
2.24e-66FFCP PHASE1:Mm9::chr8:11006242..11006246,-#_68e6eba6a7524c26908c239501c9399ep@chr8:11006242..11006246, -
2.24e-66FFCP PHASE2:Mm9::chr8:11006242..11006246,-#_68e6eba6a7524c26908c239501c9399ep@chr8:11006242..11006246, -
1.09e-59FFCP PHASE2:Mm9::chr19:8788794..8788806,-#_602501272a30cc054a6d868ba9259e71p6@Slc3a2
1.09e-59FFCP PHASE1:Mm9::chr3:121130390..121130408,-#_602501272a30cc054a6d868ba9259e71p@chr3:121130390..121130408, -
1.09e-59FFCP PHASE2:Mm9::chr8:96677906..96677921,-#_602501272a30cc054a6d868ba9259e71p@chr8:96677906..96677921, -
1.09e-59FFCP PHASE1:Mm9::chr8:96677906..96677921,-#_602501272a30cc054a6d868ba9259e71p@chr8:96677906..96677921, -
1.09e-59FFCP PHASE1:Mm9::chr19:8788794..8788806,-#_602501272a30cc054a6d868ba9259e71p6@Slc3a2
1.09e-59FFCP PHASE2:Mm9::chr8:96677795..96677811,+#_602501272a30cc054a6d868ba9259e71p@chr8:96677795..96677811, +
1.09e-59FFCP PHASE2:Mm9::chr3:121130390..121130408,-#_602501272a30cc054a6d868ba9259e71p@chr3:121130390..121130408, -
1.09e-59FFCP PHASE1:Mm9::chr8:96677795..96677811,+#_602501272a30cc054a6d868ba9259e71p@chr8:96677795..96677811, +
1.33e-59FFCP PHASE1:Mm9::chr11:102758074..102758083,+#_c75632859c50a492ce740a03c18c478dp@chr11:102758074..102758083, +
1.33e-59FFCP PHASE2:Mm9::chr11:102758074..102758083,+#_c75632859c50a492ce740a03c18c478dp@chr11:102758074..102758083, +
1.33e-59FFCP PHASE2:Mm9::chr3:89028994..89029006,+#_c75632859c50a492ce740a03c18c478dp5@Thbs3
1.33e-59FFCP PHASE1:Mm9::chr3:89028994..89029006,+#_c75632859c50a492ce740a03c18c478dp5@Thbs3
1.98e-59FFCP PHASE1:Mm9::chr14:122864178..122864180,+#_19b62348bebd8eb379fdc9ec3af7040dp@chr14:122864178..122864180, +
1.98e-59FFCP PHASE2:Mm9::chr14:122864178..122864180,+#_19b62348bebd8eb379fdc9ec3af7040dp@chr14:122864178..122864180, +
4.76e-57FFCP PHASE2:Hg19::chr8:32488262..32488265,+#_bfc0dae0a571adc108173b4ce759a881p@chr8:32488262..32488265, +
4.76e-57FFCP PHASE1:Hg19::chr8:32488262..32488265,+#_bfc0dae0a571adc108173b4ce759a881p@chr8:32488262..32488265, +
3.38e-56FFCP PHASE1:Mm9::chr11:102807862..102807882,-#_58b31dd99ce7ffaee86db5ba8453bd56p4@C1ql1
3.38e-56FFCP PHASE1:Mm9::chr9:37174919..37174932,+#_58b31dd99ce7ffaee86db5ba8453bd56p3@Hepacam
3.38e-56FFCP PHASE2:Mm9::chr11:102807862..102807882,-#_58b31dd99ce7ffaee86db5ba8453bd56p4@C1ql1
3.38e-56FFCP PHASE2:Mm9::chr9:37174919..37174932,+#_58b31dd99ce7ffaee86db5ba8453bd56p3@Hepacam
4.2e-56FFCP PHASE2:Mm9::chr11:102754827..102754845,-#_ed1a620bb003366bec5dd052fdb17fc1p@chr11:102754827..102754845, -
4.2e-56FFCP PHASE1:Mm9::chr11:102754827..102754845,-#_ed1a620bb003366bec5dd052fdb17fc1p@chr11:102754827..102754845, -
6.49e-56FFCP PHASE1:Mm9::chr14:70592626..70592638,-#_170d006e2d6d519da030b052f92ded0bp@chr14:70592626..70592638, -
6.49e-56FFCP PHASE2:Mm9::chr14:70592626..70592638,-#_170d006e2d6d519da030b052f92ded0bp@chr14:70592626..70592638, -
1.66e-54FFCP PHASE1:Mm9::chr16:15895800..15895814,-#_55d229ea5c7ed17a9c7eac0860f514e4p@chr16:15895800..15895814, -
1.66e-54FFCP PHASE1:Mm9::chr11:75244815..75244826,-#_55d229ea5c7ed17a9c7eac0860f514e4p@chr11:75244815..75244826, -
1.66e-54FFCP PHASE2:Mm9::chr16:15895800..15895814,-#_55d229ea5c7ed17a9c7eac0860f514e4p@chr16:15895800..15895814, -
1.66e-54FFCP PHASE2:Mm9::chr8:73022520..73022524,+#_55d229ea5c7ed17a9c7eac0860f514e4p@chr8:73022520..73022524, +
1.66e-54FFCP PHASE1:Mm9::chr11:102749254..102749263,-#_55d229ea5c7ed17a9c7eac0860f514e4p@chr11:102749254..102749263, -
1.66e-54FFCP PHASE1:Mm9::chr8:73022520..73022524,+#_55d229ea5c7ed17a9c7eac0860f514e4p@chr8:73022520..73022524, +
1.66e-54FFCP PHASE2:Mm9::chr11:75244815..75244826,-#_55d229ea5c7ed17a9c7eac0860f514e4p@chr11:75244815..75244826, -
1.66e-54FFCP PHASE2:Mm9::chr11:102749254..102749263,-#_55d229ea5c7ed17a9c7eac0860f514e4p@chr11:102749254..102749263, -
5.02e-54FFCP PHASE1:Mm9::chr8:96676892..96676904,+#_a395490638ccdd071ec51d5c064e40fap@chr8:96676892..96676904, +
5.02e-54FFCP PHASE2:Mm9::chr8:93340930..93340944,-#_a395490638ccdd071ec51d5c064e40fap@chr8:93340930..93340944, -
5.02e-54FFCP PHASE1:Mm9::chr8:93340930..93340944,-#_a395490638ccdd071ec51d5c064e40fap@chr8:93340930..93340944, -
5.02e-54FFCP PHASE2:Mm9::chr8:96676892..96676904,+#_a395490638ccdd071ec51d5c064e40fap@chr8:96676892..96676904, +
6.0e-54FFCP PHASE2:Mm9::chr3:89030096..89030118,+#_9447cd3ea8348905fc32647497a34064p4@Thbs3
6.0e-54FFCP PHASE1:Mm9::chr3:89030096..89030118,+#_9447cd3ea8348905fc32647497a34064p4@Thbs3
8.4e-54FFCP PHASE1:Hg19::chr6:45296191..45296203,+#_7d72947da782556893d301467fd907f4p13@RUNX2
8.4e-54FFCP PHASE2:Hg19::chr6:45296191..45296203,+#_7d72947da782556893d301467fd907f4p13@RUNX2
8.59e-54FFCP PHASE2:Mm9::chr12:112910294..112910300,-#_851c297ec442a77cba6a055f8ee26de6p@chr12:112910294..112910300, -
8.59e-54FFCP PHASE1:Mm9::chr12:112910294..112910300,-#_851c297ec442a77cba6a055f8ee26de6p@chr12:112910294..112910300, -
1.03e-53FFCP PHASE2:Mm9::chr11:102755848..102755857,-#_f3ec82fb3aff1f49a82ea85e3dc892dcp@chr11:102755848..102755857, -
1.03e-53FFCP PHASE1:Mm9::chr11:102755848..102755857,-#_f3ec82fb3aff1f49a82ea85e3dc892dcp@chr11:102755848..102755857, -
3.0e-53FFCP PHASE1:Mm9::chr7:148211055..148211073,+#_6fdbaf26c9e669676885aa5d81d77ab6p@chr7:148211055..148211073, +
3.0e-53FFCP PHASE2:Mm9::chr7:148211055..148211073,+#_6fdbaf26c9e669676885aa5d81d77ab6p@chr7:148211055..148211073, +
6.12e-53FFCP PHASE2:Mm9::chr2:11261132..11261153,+#_2424f084361961f7a18e534fee25ad59p2@Gm13293
6.12e-53FFCP PHASE1:Mm9::chr2:11261132..11261153,+#_2424f084361961f7a18e534fee25ad59p2@Gm13293
2.3e-51FFCP PHASE2:Hg19::chr7:42192092..42192108,-#_d572517d93e487c8c582bcabac4c1746p13@GLI3
2.3e-51FFCP PHASE1:Hg19::chr7:42192092..42192108,-#_d572517d93e487c8c582bcabac4c1746p13@GLI3
3.85e-51FFCP PHASE2:Hg19::chr20:35856764..35856768,+#_07c822b7ed8e6ff7ac3a5039a9819189p25@RPN2
3.85e-51FFCP PHASE1:Hg19::chr20:35856764..35856768,+#_07c822b7ed8e6ff7ac3a5039a9819189p25@RPN2
5.43e-51FFCP PHASE2:Hg19::chr14:33403217..33403226,+#_eb930456372fec7e6874818044c7f36dp@chr14:33403217..33403226, +
5.43e-51FFCP PHASE1:Hg19::chr14:33403217..33403226,+#_eb930456372fec7e6874818044c7f36dp@chr14:33403217..33403226, +
6.95e-51FFCP PHASE2:Hg19::chr4:169553961..169553972,+#_dea5e8e5638f8659d0c66fae96967f6dp@chr4:169553961..169553972, +
6.95e-51FFCP PHASE1:Hg19::chr4:169553961..169553972,+#_dea5e8e5638f8659d0c66fae96967f6dp@chr4:169553961..169553972, +
7.9e-51FFCP PHASE2:Hg19::chr1:98642833..98642844,+#_0158a6a9d5e1a924e2ae4082b8a8cb9fp@chr1:98642833..98642844, +
7.9e-51FFCP PHASE1:Hg19::chr1:98642833..98642844,+#_0158a6a9d5e1a924e2ae4082b8a8cb9fp@chr1:98642833..98642844, +
8.98e-51FFCP PHASE2:Hg19::chr1:98518907..98518920,+#_3bfd2365d51fa78d979d3ab8321173bbp@chr1:98518907..98518920, +
8.98e-51FFCP PHASE1:Hg19::chr1:98518907..98518920,+#_3bfd2365d51fa78d979d3ab8321173bbp@chr1:98518907..98518920, +
6.0e-50FFCP PHASE1:Mm9::chr1:72895848..72895864,+#_a4fb2f8818b9febacaf2d407377a70ffp@chr1:72895848..72895864, +
6.0e-50FFCP PHASE2:Mm9::chr1:72895848..72895864,+#_a4fb2f8818b9febacaf2d407377a70ffp@chr1:72895848..72895864, +
2.62e-49FFCP PHASE1:Mm9::chr19:8788690..8788697,-#_997405810b779efa59b013e9fd7aacaep17@Slc3a2
2.62e-49FFCP PHASE2:Mm9::chr19:8788690..8788697,-#_997405810b779efa59b013e9fd7aacaep17@Slc3a2
3.0e-49FFCP PHASE1:Mm9::chr1:174150595..174150602,-#_1c64888e238deb201627643617c767b2p@chr1:174150595..174150602, -
3.0e-49FFCP PHASE2:Mm9::chr1:174150595..174150602,-#_1c64888e238deb201627643617c767b2p@chr1:174150595..174150602, -
3.53e-49FFCP PHASE2:Mm9::chr1:174128178..174128192,-#_b9f1ae931b0cf0251d2fd8d6bcd7c8adp@chr1:174128178..174128192, -
3.53e-49FFCP PHASE1:Mm9::chr1:174128178..174128192,-#_b9f1ae931b0cf0251d2fd8d6bcd7c8adp@chr1:174128178..174128192, -
3.83e-49FFCP PHASE2:Mm9::chr8:96704054..96704065,-#_2962fdbdfd61716c62d84f3cc715981bp@chr8:96704054..96704065, -
3.83e-49FFCP PHASE1:Mm9::chr8:96704054..96704065,-#_2962fdbdfd61716c62d84f3cc715981bp@chr8:96704054..96704065, -
1.53e-48FFCP PHASE1:Mm9::chr1:72895732..72895747,-#_c7caaabbbee3447517a4ed576418ab10p@chr1:72895732..72895747, -
1.53e-48FFCP PHASE2:Mm9::chr1:72895732..72895747,-#_c7caaabbbee3447517a4ed576418ab10p@chr1:72895732..72895747, -
1.37e-47FFCP PHASE1:Mm9::chr1:72898598..72898634,+#_ba016775ae506d7e4e209a26055ce1c5p@chr1:72898598..72898634, +
1.37e-47FFCP PHASE2:Mm9::chr1:72898598..72898634,+#_ba016775ae506d7e4e209a26055ce1c5p@chr1:72898598..72898634, +
1.8e-47FFCP PHASE1:Mm9::chr1:72898658..72898669,+#_5e6e5a6942a30ee73e3290b39877f853p@chr1:72898658..72898669, +
1.8e-47FFCP PHASE2:Mm9::chr1:72898658..72898669,+#_5e6e5a6942a30ee73e3290b39877f853p@chr1:72898658..72898669, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=CL:0002453&oldid=3275476"