UBERON:0000162: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 4: | Line 4: | ||
|namespace= | |namespace= | ||
|def="Posterior opening that serves as the only such opening for the intestinal and urinary tracts of certain animal species" [Wikipedia:Cloaca] | |def="Posterior opening that serves as the only such opening for the intestinal and urinary tracts of certain animal species" [Wikipedia:Cloaca] | ||
|xref=AAO:0000095;;GAID:1206;;MESH:A.13.223;;ncithesaurus:Cloaca;;SCTID:362857006;; | |xref=AAO:0000095;;GAID:1206;;MESH:A.13.223;;ncithesaurus:Cloaca;;SCTID:362857006;;TAO:0000330;;VHOG:0001186;;XAO:0000244;;ZFA:0000330 | ||
|is_a=UBERON:0000077;;UBERON:0000161 | |is_a=UBERON:0000077;;UBERON:0000161 | ||
|synonym="cloacal chamber" RELATED [];;"vent" RELATED [] | |synonym="cloacal chamber" RELATED [];;"vent" RELATED [] | ||
|comment=Human beings only have an embryonic cloaca, which is split up into separate tracts during the development of the urinary and reproductive organs[WP] | |comment=Human beings only have an embryonic cloaca, which is split up into separate tracts during the development of the urinary and reproductive organs[WP]. We deliberately exclude the wbbt class here, but may in future have a grouping class | ||
|alt_id= | |alt_id= | ||
|disjoint_from= | |disjoint_from= | ||
| Line 14: | Line 14: | ||
|obo_creation_date= | |obo_creation_date= | ||
|subset= | |subset= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Anatomical structure which is the common receptacle for the alimentary canal, Wolffian ducts, oviducts, and the bladder.[AAO]" xsd:string | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 16:56, 26 June 2012
| Name: | cloaca | ||
|---|---|---|---|
| Definition: | "Posterior opening that serves as the only such opening for the intestinal and urinary tracts of certain animal species" [Wikipedia:Cloaca] | ||
| Xrefs: |
| ||
| Synonyms: |
"cloacal chamber" RELATED [] "vent" RELATED [] | ||
| Comments: | Human beings only have an embryonic cloaca, which is split up into separate tracts during the development of the urinary and reproductive organs[WP]. We deliberately exclude the wbbt class here, but may in future have a grouping class |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000077(mixed endoderm/mesoderm-derived structure),UBERON:0000161(orifice) |
|---|
Children
| is a: | UBERON:0000163 (embryonic cloaca) |
|---|---|
| part of: | UBERON:0012481 (cloacal epithelium) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000162 (cloaca), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 4.58e-44 | FFCP PHASE2:Mm9::chr1:132699659..132699668,+#_10f68facfbb7399895e5c2ac3d49a695 | p@chr1:132699659..132699668, + |
| 4.58e-44 | FFCP PHASE1:Mm9::chr1:132699659..132699668,+#_10f68facfbb7399895e5c2ac3d49a695 | p@chr1:132699659..132699668, + |
| 1.7e-39 | FFCP PHASE2:Mm9::chr9:96425825..96425834,-#_33633447503fc13438e784bddfd0b0b9 | p@chr9:96425825..96425834, - |
| 1.7e-39 | FFCP PHASE1:Mm9::chr9:96425983..96425992,+#_33633447503fc13438e784bddfd0b0b9 | p@chr9:96425983..96425992, + |
| 1.7e-39 | FFCP PHASE2:Mm9::chr9:96425983..96425992,+#_33633447503fc13438e784bddfd0b0b9 | p@chr9:96425983..96425992, + |
| 1.7e-39 | FFCP PHASE2:Mm9::chr15:58237385..58237400,+#_33633447503fc13438e784bddfd0b0b9 | p@chr15:58237385..58237400, + |
| 1.7e-39 | FFCP PHASE1:Mm9::chr15:58237385..58237400,+#_33633447503fc13438e784bddfd0b0b9 | p@chr15:58237385..58237400, + |
| 1.7e-39 | FFCP PHASE2:Mm9::chr7:114836650..114836663,+#_33633447503fc13438e784bddfd0b0b9 | p@chr7:114836650..114836663, + |
| 1.7e-39 | FFCP PHASE1:Mm9::chr9:96425825..96425834,-#_33633447503fc13438e784bddfd0b0b9 | p@chr9:96425825..96425834, - |
| 1.7e-39 | FFCP PHASE1:Mm9::chr7:114836650..114836663,+#_33633447503fc13438e784bddfd0b0b9 | p@chr7:114836650..114836663, + |
| 2.66e-39 | FFCP PHASE1:Mm9::chr6:124520322..124520333,+#_2107f23b16fe2911712a493b9b1a6304 | p3@C1rb |
| 2.66e-39 | FFCP PHASE1:Mm9::chr9:120464756..120464765,+#_2107f23b16fe2911712a493b9b1a6304 | p@chr9:120464756..120464765, + |
| 2.66e-39 | FFCP PHASE2:Mm9::chr9:120464756..120464765,+#_2107f23b16fe2911712a493b9b1a6304 | p@chr9:120464756..120464765, + |
| 2.66e-39 | FFCP PHASE1:Mm9::chr9:36337031..36337049,-#_2107f23b16fe2911712a493b9b1a6304 | p@chr9:36337031..36337049, - |
| 2.66e-39 | FFCP PHASE2:Mm9::chr5:120136866..120136874,+#_2107f23b16fe2911712a493b9b1a6304 | p@chr5:120136866..120136874, + |
| 2.66e-39 | FFCP PHASE1:Mm9::chr7:28914450..28914477,+#_2107f23b16fe2911712a493b9b1a6304 | p2@9530053A07Rik |
| 2.66e-39 | FFCP PHASE2:Mm9::chr7:28914478..28914498,+#_2107f23b16fe2911712a493b9b1a6304 | p3@9530053A07Rik |
| 2.66e-39 | FFCP PHASE2:Mm9::chr7:28900349..28900364,-#_2107f23b16fe2911712a493b9b1a6304 | p@chr7:28900349..28900364, - |
| 2.66e-39 | FFCP PHASE1:Mm9::chr5:120136866..120136874,+#_2107f23b16fe2911712a493b9b1a6304 | p@chr5:120136866..120136874, + |
| 2.66e-39 | FFCP PHASE1:Mm9::chr6:42547567..42547580,-#_2107f23b16fe2911712a493b9b1a6304 | p4@Fam115e |
| 2.66e-39 | FFCP PHASE1:Mm9::chr7:28922549..28922561,+#_2107f23b16fe2911712a493b9b1a6304 | p@chr7:28922549..28922561, + |
| 2.66e-39 | FFCP PHASE2:Mm9::chr19:11353922..11353934,-#_2107f23b16fe2911712a493b9b1a6304 | p@chr19:11353922..11353934, - |
| 2.66e-39 | FFCP PHASE1:Mm9::chr7:55028037..55028075,+#_2107f23b16fe2911712a493b9b1a6304 | p@chr7:55028037..55028075, + |
| 2.66e-39 | FFCP PHASE1:Mm9::chr7:28914478..28914498,+#_2107f23b16fe2911712a493b9b1a6304 | p3@9530053A07Rik |
| 2.66e-39 | FFCP PHASE1:Mm9::chr7:28924794..28924814,+#_2107f23b16fe2911712a493b9b1a6304 | p@chr7:28924794..28924814, + |
| 2.66e-39 | FFCP PHASE1:Mm9::chr7:28900349..28900364,-#_2107f23b16fe2911712a493b9b1a6304 | p@chr7:28900349..28900364, - |
| 2.66e-39 | FFCP PHASE2:Mm9::chr7:55028037..55028075,+#_2107f23b16fe2911712a493b9b1a6304 | p@chr7:55028037..55028075, + |
| 2.66e-39 | FFCP PHASE1:Mm9::chr6:124520368..124520379,+#_2107f23b16fe2911712a493b9b1a6304 | p4@C1rb |
| 2.66e-39 | FFCP PHASE2:Mm9::chr9:36337031..36337049,-#_2107f23b16fe2911712a493b9b1a6304 | p@chr9:36337031..36337049, - |
| 2.66e-39 | FFCP PHASE1:Mm9::chr19:11353922..11353934,-#_2107f23b16fe2911712a493b9b1a6304 | p@chr19:11353922..11353934, - |
| 2.66e-39 | FFCP PHASE2:Mm9::chr6:124520322..124520333,+#_2107f23b16fe2911712a493b9b1a6304 | p3@C1rb |
| 2.66e-39 | FFCP PHASE2:Mm9::chr7:28922549..28922561,+#_2107f23b16fe2911712a493b9b1a6304 | p@chr7:28922549..28922561, + |
| 2.66e-39 | FFCP PHASE2:Mm9::chr6:124520368..124520379,+#_2107f23b16fe2911712a493b9b1a6304 | p4@C1rb |
| 2.66e-39 | FFCP PHASE1:Mm9::chr9:120464717..120464741,+#_2107f23b16fe2911712a493b9b1a6304 | p@chr9:120464717..120464741, + |
| 2.66e-39 | FFCP PHASE2:Mm9::chr9:120464717..120464741,+#_2107f23b16fe2911712a493b9b1a6304 | p@chr9:120464717..120464741, + |
| 2.66e-39 | FFCP PHASE2:Mm9::chr6:42547567..42547580,-#_2107f23b16fe2911712a493b9b1a6304 | p4@Fam115e |
| 2.66e-39 | FFCP PHASE2:Mm9::chr7:28924794..28924814,+#_2107f23b16fe2911712a493b9b1a6304 | p@chr7:28924794..28924814, + |
| 2.66e-39 | FFCP PHASE2:Mm9::chr7:28914450..28914477,+#_2107f23b16fe2911712a493b9b1a6304 | p2@9530053A07Rik |
| 2.02e-32 | FFCP PHASE1:Hg19::chr10:91567075..91567084,+#_43f6be8aecdc427b7459cacf9106d116 | p@chr10:91567075..91567084, + |
| 2.02e-32 | FFCP PHASE2:Hg19::chr10:91567053..91567066,+#_43f6be8aecdc427b7459cacf9106d116 | p@chr10:91567053..91567066, + |
| 2.02e-32 | FFCP PHASE1:Hg19::chr10:91567053..91567066,+#_43f6be8aecdc427b7459cacf9106d116 | p@chr10:91567053..91567066, + |
| 2.02e-32 | FFCP PHASE2:Hg19::chr10:91567075..91567084,+#_43f6be8aecdc427b7459cacf9106d116 | p@chr10:91567075..91567084, + |
| 4.03e-30 | FFCP PHASE1:Mm9::chr7:31397780..31397790,-#_66afd312bc0e8f7a97a6696e6b9a3b24 | p3@Upk1a |
| 4.03e-30 | FFCP PHASE1:Mm9::chr3:92288406..92288413,-#_66afd312bc0e8f7a97a6696e6b9a3b24 | p@chr3:92288406..92288413, - |
| 4.03e-30 | FFCP PHASE2:Mm9::chr14:32955207..32955211,+#_66afd312bc0e8f7a97a6696e6b9a3b24 | p1@Msmb |
| 4.03e-30 | FFCP PHASE1:Mm9::chr7:114836670..114836681,+#_66afd312bc0e8f7a97a6696e6b9a3b24 | p@chr7:114836670..114836681, + |
| 4.03e-30 | FFCP PHASE1:Mm9::chr14:32955207..32955211,+#_66afd312bc0e8f7a97a6696e6b9a3b24 | p1@Msmb |
| 4.03e-30 | FFCP PHASE2:Mm9::chr7:31397780..31397790,-#_66afd312bc0e8f7a97a6696e6b9a3b24 | p3@Upk1a |
| 4.03e-30 | FFCP PHASE2:Mm9::chr3:92288406..92288413,-#_66afd312bc0e8f7a97a6696e6b9a3b24 | p@chr3:92288406..92288413, - |
| 4.03e-30 | FFCP PHASE2:Mm9::chr7:114836670..114836681,+#_66afd312bc0e8f7a97a6696e6b9a3b24 | p@chr7:114836670..114836681, + |
| 5.61e-30 | FFCP PHASE2:Mm9::chr5:33251992..33251995,+#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr5:33251992..33251995, + |
| 5.61e-30 | FFCP PHASE2:Mm9::chr12:93026806..93026816,-#_7a2b4c988cd60b838ccc465a634e33f1 | p12@Ston2 |
| 5.61e-30 | FFCP PHASE1:Mm9::chr6:42551615..42551622,-#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr6:42551615..42551622, - |
| 5.61e-30 | FFCP PHASE2:Mm9::chr7:55002686..55002717,+#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr7:55002686..55002717, + |
| 5.61e-30 | FFCP PHASE1:Mm9::chr6:57789909..57789916,-#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr6:57789909..57789916, - |
| 5.61e-30 | FFCP PHASE2:Mm9::chrX:137642090..137642093,-#_7a2b4c988cd60b838ccc465a634e33f1 | p8@Col4a6 |
| 5.61e-30 | FFCP PHASE2:Mm9::chr15:101522998..101523006,-#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr15:101522998..101523006, - |
| 5.61e-30 | FFCP PHASE2:Mm9::chr16:20188895..20188904,+#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr16:20188895..20188904, + |
| 5.61e-30 | FFCP PHASE1:Mm9::chr4:122366201..122366206,-#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr4:122366201..122366206, - |
| 5.61e-30 | FFCP PHASE1:Mm9::chr11:100065595..100065616,-#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr11:100065595..100065616, - |
| 5.61e-30 | FFCP PHASE2:Mm9::chr6:42547830..42547837,-#_7a2b4c988cd60b838ccc465a634e33f1 | p8@Fam115e |
| 5.61e-30 | FFCP PHASE1:Mm9::chr7:55028223..55028250,+#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr7:55028223..55028250, + |
| 5.61e-30 | FFCP PHASE1:Mm9::chr6:42536469..42536478,-#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr6:42536469..42536478, - |
| 5.61e-30 | FFCP PHASE1:Mm9::chr9:7867982..7867988,-#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr9:7867982..7867988, - |
| 5.61e-30 | FFCP PHASE2:Mm9::chr6:42536469..42536478,-#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr6:42536469..42536478, - |
| 5.61e-30 | FFCP PHASE2:Mm9::chr6:42547401..42547411,-#_7a2b4c988cd60b838ccc465a634e33f1 | p9@Fam115e |
| 5.61e-30 | FFCP PHASE2:Mm9::chr11:100107526..100107540,-#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr11:100107526..100107540, - |
| 5.61e-30 | FFCP PHASE1:Mm9::chr4:152405146..152405150,+#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr4:152405146..152405150, + |
| 5.61e-30 | FFCP PHASE1:Mm9::chr17:24172292..24172300,+#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr17:24172292..24172300, + |
| 5.61e-30 | FFCP PHASE1:Mm9::chr6:42536000..42536005,-#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr6:42536000..42536005, - |
| 5.61e-30 | FFCP PHASE2:Mm9::chr4:121069181..121069190,-#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr4:121069181..121069190, - |
| 5.61e-30 | FFCP PHASE1:Mm9::chr16:20186617..20186622,+#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr16:20186617..20186622, + |
| 5.61e-30 | FFCP PHASE2:Mm9::chr6:42536000..42536005,-#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr6:42536000..42536005, - |
| 5.61e-30 | FFCP PHASE2:Mm9::chr17:24078882..24078896,+#_7a2b4c988cd60b838ccc465a634e33f1 | p2@Sbp |
| 5.61e-30 | FFCP PHASE2:Mm9::chr12:80992302..80992309,+#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr12:80992302..80992309, + |
| 5.61e-30 | FFCP PHASE1:Mm9::chr16:96752893..96752921,+#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr16:96752893..96752921, + |
| 5.61e-30 | FFCP PHASE2:Mm9::chr19:11353179..11353189,-#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr19:11353179..11353189, - |
| 5.61e-30 | FFCP PHASE2:Mm9::chr7:55028223..55028250,+#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr7:55028223..55028250, + |
| 5.61e-30 | FFCP PHASE1:Mm9::chr12:66314493..66314501,-#_7a2b4c988cd60b838ccc465a634e33f1 | p1@uc007nrj.1 |
| 5.61e-30 | FFCP PHASE2:Mm9::chr4:138419516..138419520,-#_7a2b4c988cd60b838ccc465a634e33f1 | p14@Pla2g5 |
| 5.61e-30 | FFCP PHASE1:Mm9::chr6:42543450..42543455,-#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr6:42543450..42543455, - |
| 5.61e-30 | FFCP PHASE2:Mm9::chr9:109794961..109794968,-#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr9:109794961..109794968, - |
| 5.61e-30 | FFCP PHASE2:Mm9::chr1:37769602..37769611,-#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr1:37769602..37769611, - |
| 5.61e-30 | FFCP PHASE1:Mm9::chr11:100108943..100108977,-#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr11:100108943..100108977, - |
| 5.61e-30 | FFCP PHASE1:Mm9::chr9:74005044..74005065,+#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr9:74005044..74005065, + |
| 5.61e-30 | FFCP PHASE1:Mm9::chr6:42537176..42537182,-#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr6:42537176..42537182, - |
| 5.61e-30 | FFCP PHASE2:Mm9::chr16:20186617..20186622,+#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr16:20186617..20186622, + |
| 5.61e-30 | FFCP PHASE2:Mm9::chr14:68331267..68331286,-#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr14:68331267..68331286, - |
| 5.61e-30 | FFCP PHASE1:Mm9::chr6:42547300..42547314,-#_7a2b4c988cd60b838ccc465a634e33f1 | p7@Fam115e |
| 5.61e-30 | FFCP PHASE2:Mm9::chr6:42537176..42537182,-#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr6:42537176..42537182, - |
| 5.61e-30 | FFCP PHASE2:Mm9::chr4:102102677..102102684,+#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr4:102102677..102102684, + |
| 5.61e-30 | FFCP PHASE2:Mm9::chr2:36098306..36098309,+#_7a2b4c988cd60b838ccc465a634e33f1 | p5@Ptgs1 |
| 5.61e-30 | FFCP PHASE1:Mm9::chr7:55008002..55008008,-#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr7:55008002..55008008, - |
| 5.61e-30 | FFCP PHASE2:Mm9::chr9:7867982..7867988,-#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr9:7867982..7867988, - |
| 5.61e-30 | FFCP PHASE1:Mm9::chr1:37769602..37769611,-#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr1:37769602..37769611, - |
| 5.61e-30 | FFCP PHASE1:Mm9::chr12:93026806..93026816,-#_7a2b4c988cd60b838ccc465a634e33f1 | p12@Ston2 |
| 5.61e-30 | FFCP PHASE2:Mm9::chr2:137020090..137020093,+#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr2:137020090..137020093, + |
| 5.61e-30 | FFCP PHASE2:Mm9::chr6:42547300..42547314,-#_7a2b4c988cd60b838ccc465a634e33f1 | p7@Fam115e |
| 5.61e-30 | FFCP PHASE2:Mm9::chr9:122970758..122970759,+#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr9:122970758..122970759, + |
| 5.61e-30 | FFCP PHASE2:Mm9::chr11:89595040..89595050,-#_7a2b4c988cd60b838ccc465a634e33f1 | p@chr11:89595040..89595050, - |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical structure which is the common receptacle for the alimentary canal, Wolffian ducts, oviducts, and the bladder.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
