UBERON:0001961: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 14: | Line 14: | ||
|obo_creation_date= | |obo_creation_date= | ||
|subset=uberon_slim | |subset=uberon_slim | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 17:00, 26 June 2012
| Name: | mucosa-associated lymphoid tissue | ||
|---|---|---|---|
| Definition: | "diffuse system of small concentrations of lymphoid tissue found in various sites of the body such as the gastrointestinal tract, thyroid, breast, lung, salivary glands, eye, and skin[WP]. Mucosal-associated lymphoid tissue is typically found as nodules associated with mucosal epithelia with distinct internal structures including B- and T-zones for the activation of lymphocytes[GO]." [Wikipedia:Mucosa-associated_lymphoid_tissue] | ||
| Xrefs: |
| ||
| Synonyms: |
"epithelio-lymphoid tissue" EXACT [] "MALT" EXACT [] "mucosa associated lymphatic tissue" EXACT [] "mucosa associated lymphoid tissue" EXACT [] "mucosa-associated lymphoid tissue" EXACT [GO:0048537] "mucosal-associated lymphatic tissue" EXACT [GO:0048537] "mucosal-associated lymphoid tissue" EXACT [GO:0048537] | ||
| Comments: | This class was created automatically from a combination of ontologies | ||
| Alt_id: | UBERON:FMA_62819-MA_0000140 | ||
| Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0001744(lymphoid tissue) |
|---|
Children
| is a: | UBERON:0001962 (gut-associated lymphoid tissue) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10047-101G2 (tonsil, adult, pool1)
- 10261-104C9
- 10262-104D1 (Follicle Associated Epithelium, pool2)
- 10263-104D2 (Follicle Associated Epithelium, pool3)
Mouse (Mus musculus)
- 10047-101G2 (tonsil, adult, pool1)
- 10261-104C9
- 10262-104D1 (Follicle Associated Epithelium, pool2)
- 10263-104D2 (Follicle Associated Epithelium, pool3)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001961 (mucosa-associated lymphoid tissue), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.42e-195 | FFCP PHASE1:Hg19::chr14:107049312..107049315,-#_71e06f13452d3b007fcf29e7d9a7066e | p2@IGHV3-53 |
| 5.42e-195 | FFCP PHASE1:Hg19::chr2:89459813..89459818,-#_71e06f13452d3b007fcf29e7d9a7066e | p1@IGKV6-21 |
| 5.42e-195 | FFCP PHASE1:Hg19::chr20:21684387..21684390,-#_71e06f13452d3b007fcf29e7d9a7066e | p2@ENST00000424377 |
| 5.42e-195 | FFCP PHASE1:Hg19::chr16:12337006..12337010,+#_71e06f13452d3b007fcf29e7d9a7066e | p@chr16:12337006..12337010, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr19:5850872..5850893,-#_71e06f13452d3b007fcf29e7d9a7066e | p@chr19:5850872..5850893, - |
| 5.42e-195 | FFCP PHASE2:Hg19::chr2:89459813..89459818,-#_71e06f13452d3b007fcf29e7d9a7066e | p1@IGKV6-21 |
| 5.42e-195 | FFCP PHASE1:Hg19::chr12:53200416..53200421,+#_71e06f13452d3b007fcf29e7d9a7066e | p7@CU692075 |
| 5.42e-195 | FFCP PHASE2:Hg19::chr20:21684387..21684390,-#_71e06f13452d3b007fcf29e7d9a7066e | p2@ENST00000424377 |
| 5.42e-195 | FFCP PHASE2:Hg19::chr19:5850872..5850893,-#_71e06f13452d3b007fcf29e7d9a7066e | p@chr19:5850872..5850893, - |
| 5.42e-195 | FFCP PHASE2:Hg19::chr16:12334592..12334599,+#_71e06f13452d3b007fcf29e7d9a7066e | p@chr16:12334592..12334599, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr14:107049312..107049315,-#_71e06f13452d3b007fcf29e7d9a7066e | p2@IGHV3-53 |
| 5.42e-195 | FFCP PHASE2:Hg19::chr12:53200416..53200421,+#_71e06f13452d3b007fcf29e7d9a7066e | p7@CU692075 |
| 5.42e-195 | FFCP PHASE1:Hg19::chr16:12334592..12334599,+#_71e06f13452d3b007fcf29e7d9a7066e | p@chr16:12334592..12334599, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr16:12337006..12337010,+#_71e06f13452d3b007fcf29e7d9a7066e | p@chr16:12337006..12337010, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr11:1249994..1249999,+#_f363284ca4f003686a89986e6532b61a | p30@MUC5B |
| 9.37e-99 | FFCP PHASE1:Hg19::chr19:14662395..14662414,+#_f363284ca4f003686a89986e6532b61a | p@chr19:14662395..14662414, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr20:31611186..31611191,+#_f363284ca4f003686a89986e6532b61a | p10@BPIFB6 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr11:1263622..1263627,+#_f363284ca4f003686a89986e6532b61a | p@chr11:1263622..1263627, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr11:1263622..1263627,+#_f363284ca4f003686a89986e6532b61a | p@chr11:1263622..1263627, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr20:31611454..31611461,+#_f363284ca4f003686a89986e6532b61a | p8@BPIFB6 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr7:25361115..25361117,+#_f363284ca4f003686a89986e6532b61a | p@chr7:25361115..25361117, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr7:25361115..25361117,+#_f363284ca4f003686a89986e6532b61a | p@chr7:25361115..25361117, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr6:168095835..168095838,-#_f363284ca4f003686a89986e6532b61a | p@chr6:168095835..168095838, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr19:14662395..14662414,+#_f363284ca4f003686a89986e6532b61a | p@chr19:14662395..14662414, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr11:1249994..1249999,+#_f363284ca4f003686a89986e6532b61a | p30@MUC5B |
| 9.37e-99 | FFCP PHASE1:Hg19::chr20:31611186..31611191,+#_f363284ca4f003686a89986e6532b61a | p10@BPIFB6 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr6:168095835..168095838,-#_f363284ca4f003686a89986e6532b61a | p@chr6:168095835..168095838, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr20:31611454..31611461,+#_f363284ca4f003686a89986e6532b61a | p8@BPIFB6 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr10:135337234..135337244,-#_d6f18d0476650f94a4565cbe7fd75824 | p@chr10:135337234..135337244, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr11:1263382..1263385,+#_d6f18d0476650f94a4565cbe7fd75824 | p@chr11:1263382..1263385, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr16:70602961..70602972,+#_d6f18d0476650f94a4565cbe7fd75824 | p@chr16:70602961..70602972, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr12:52478564..52478569,+#_d6f18d0476650f94a4565cbe7fd75824 | p@chr12:52478564..52478569, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr11:1263382..1263385,+#_d6f18d0476650f94a4565cbe7fd75824 | p@chr11:1263382..1263385, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr11:1260725..1260734,+#_d6f18d0476650f94a4565cbe7fd75824 | p@chr11:1260725..1260734, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr20:36694529..36694537,+#_d6f18d0476650f94a4565cbe7fd75824 | p30@RPRD1B |
| 2.55e-98 | FFCP PHASE2:Hg19::chr11:1260725..1260734,+#_d6f18d0476650f94a4565cbe7fd75824 | p@chr11:1260725..1260734, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr16:70602961..70602972,+#_d6f18d0476650f94a4565cbe7fd75824 | p@chr16:70602961..70602972, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr20:36694529..36694537,+#_d6f18d0476650f94a4565cbe7fd75824 | p30@RPRD1B |
| 2.55e-98 | FFCP PHASE1:Hg19::chr12:52478564..52478569,+#_d6f18d0476650f94a4565cbe7fd75824 | p@chr12:52478564..52478569, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr4:8437851..8437881,+#_d6f18d0476650f94a4565cbe7fd75824 | p6@METTL19 |
| 2.55e-98 | FFCP PHASE2:Hg19::chr4:8437851..8437881,+#_d6f18d0476650f94a4565cbe7fd75824 | p6@METTL19 |
| 2.55e-98 | FFCP PHASE2:Hg19::chr10:135337234..135337244,-#_d6f18d0476650f94a4565cbe7fd75824 | p@chr10:135337234..135337244, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr6:69785263..69785268,-#_ee613dbff46de927c7350e66aca0bbbf | p@chr6:69785263..69785268, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr19:38060099..38060102,+#_ee613dbff46de927c7350e66aca0bbbf | p@chr19:38060099..38060102, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr19:31038353..31038362,+#_ee613dbff46de927c7350e66aca0bbbf | p@chr19:31038353..31038362, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr12:115979100..115979103,-#_ee613dbff46de927c7350e66aca0bbbf | p@chr12:115979100..115979103, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr12:115979100..115979103,-#_ee613dbff46de927c7350e66aca0bbbf | p@chr12:115979100..115979103, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr17:59564142..59564144,+#_ee613dbff46de927c7350e66aca0bbbf | p@chr17:59564142..59564144, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr6:69701328..69701342,-#_ee613dbff46de927c7350e66aca0bbbf | p1@ENSMUST00000114212 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:63059909..63059910,+#_ee613dbff46de927c7350e66aca0bbbf | p@chr2:63059909..63059910, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:69086930..69086933,+#_ee613dbff46de927c7350e66aca0bbbf | p@chr9:69086930..69086933, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr6:69785263..69785268,-#_ee613dbff46de927c7350e66aca0bbbf | p@chr6:69785263..69785268, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr17:59564142..59564144,+#_ee613dbff46de927c7350e66aca0bbbf | p@chr17:59564142..59564144, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr8:23117055..23117056,-#_ee613dbff46de927c7350e66aca0bbbf | p@chr8:23117055..23117056, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr19:31038353..31038362,+#_ee613dbff46de927c7350e66aca0bbbf | p@chr19:31038353..31038362, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:14201203..14201212,+#_ee613dbff46de927c7350e66aca0bbbf | p@chr2:14201203..14201212, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr8:23117055..23117056,-#_ee613dbff46de927c7350e66aca0bbbf | p@chr8:23117055..23117056, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr19:38060099..38060102,+#_ee613dbff46de927c7350e66aca0bbbf | p@chr19:38060099..38060102, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr12:116051009..116051016,-#_ee613dbff46de927c7350e66aca0bbbf | p@chr12:116051009..116051016, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr12:116051009..116051016,-#_ee613dbff46de927c7350e66aca0bbbf | p@chr12:116051009..116051016, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:63059909..63059910,+#_ee613dbff46de927c7350e66aca0bbbf | p@chr2:63059909..63059910, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr6:69701328..69701342,-#_ee613dbff46de927c7350e66aca0bbbf | p1@ENSMUST00000114212 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr12:115974938..115974945,-#_ee613dbff46de927c7350e66aca0bbbf | p@chr12:115974938..115974945, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:14201203..14201212,+#_ee613dbff46de927c7350e66aca0bbbf | p@chr2:14201203..14201212, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr12:115974938..115974945,-#_ee613dbff46de927c7350e66aca0bbbf | p@chr12:115974938..115974945, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:69086930..69086933,+#_ee613dbff46de927c7350e66aca0bbbf | p@chr9:69086930..69086933, + |
| 1.23e-66 | FFCP PHASE1:Hg19::chr1:157567826..157567835,-#_6e29dbda06d056f1b8a4b0c49b6aa1f1 | p2@FCRL4 |
| 1.23e-66 | FFCP PHASE1:Hg19::chr12:52478546..52478552,+#_6e29dbda06d056f1b8a4b0c49b6aa1f1 | p@chr12:52478546..52478552, + |
| 1.23e-66 | FFCP PHASE2:Hg19::chr1:157567826..157567835,-#_6e29dbda06d056f1b8a4b0c49b6aa1f1 | p2@FCRL4 |
| 1.23e-66 | FFCP PHASE2:Hg19::chr12:52478546..52478552,+#_6e29dbda06d056f1b8a4b0c49b6aa1f1 | p@chr12:52478546..52478552, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr19:36640447..36640459,+#_897b359620fd78a4029d1f5d3ea7a577 | p@chr19:36640447..36640459, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr11:1265985..1265990,+#_897b359620fd78a4029d1f5d3ea7a577 | p@chr11:1265985..1265990, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr14:103560509..103560517,+#_897b359620fd78a4029d1f5d3ea7a577 | p@chr14:103560509..103560517, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr20:62321640..62321645,+#_897b359620fd78a4029d1f5d3ea7a577 | p1@BC131817 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr13:107026326..107026335,-#_897b359620fd78a4029d1f5d3ea7a577 | p@chr13:107026326..107026335, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr20:31612754..31612763,+#_897b359620fd78a4029d1f5d3ea7a577 | p@chr20:31612754..31612763, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr14:103560509..103560517,+#_897b359620fd78a4029d1f5d3ea7a577 | p@chr14:103560509..103560517, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr13:107026326..107026335,-#_897b359620fd78a4029d1f5d3ea7a577 | p@chr13:107026326..107026335, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr19:36640447..36640459,+#_897b359620fd78a4029d1f5d3ea7a577 | p@chr19:36640447..36640459, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr20:62321640..62321645,+#_897b359620fd78a4029d1f5d3ea7a577 | p1@BC131817 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr11:1265985..1265990,+#_897b359620fd78a4029d1f5d3ea7a577 | p@chr11:1265985..1265990, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr20:31612754..31612763,+#_897b359620fd78a4029d1f5d3ea7a577 | p@chr20:31612754..31612763, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr3:124535316..124535340,+#_9f67c72851bfaa15d213f23f32b39291 | p@chr3:124535316..124535340, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr16:69418649..69418659,-#_9f67c72851bfaa15d213f23f32b39291 | p@chr16:69418649..69418659, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr18:29006845..29006854,-#_9f67c72851bfaa15d213f23f32b39291 | p@chr18:29006845..29006854, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr3:187957664..187957675,+#_9f67c72851bfaa15d213f23f32b39291 | p58@LPP |
| 4.66e-66 | FFCP PHASE2:Hg19::chr3:187957646..187957656,+#_9f67c72851bfaa15d213f23f32b39291 | p43@LPP |
| 4.66e-66 | FFCP PHASE1:Hg19::chr1:152382640..152382645,+#_9f67c72851bfaa15d213f23f32b39291 | p@chr1:152382640..152382645, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr18:49921251..49921263,+#_9f67c72851bfaa15d213f23f32b39291 | p@chr18:49921251..49921263, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr12:53673418..53673427,+#_9f67c72851bfaa15d213f23f32b39291 | p9@ESPL1 |
| 4.66e-66 | FFCP PHASE2:Hg19::chr3:187957664..187957675,+#_9f67c72851bfaa15d213f23f32b39291 | p58@LPP |
| 4.66e-66 | FFCP PHASE1:Hg19::chr16:69418649..69418659,-#_9f67c72851bfaa15d213f23f32b39291 | p@chr16:69418649..69418659, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr19:51530837..51530842,-#_9f67c72851bfaa15d213f23f32b39291 | p10@KLK11 |
| 4.66e-66 | FFCP PHASE1:Hg19::chr6:30954084..30954093,-#_9f67c72851bfaa15d213f23f32b39291 | p@chr6:30954084..30954093, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr1:152382640..152382645,+#_9f67c72851bfaa15d213f23f32b39291 | p@chr1:152382640..152382645, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr18:29006845..29006854,-#_9f67c72851bfaa15d213f23f32b39291 | p@chr18:29006845..29006854, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr18:49921251..49921263,+#_9f67c72851bfaa15d213f23f32b39291 | p@chr18:49921251..49921263, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr6:30954084..30954093,-#_9f67c72851bfaa15d213f23f32b39291 | p@chr6:30954084..30954093, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr11:1283367..1283377,+#_9f67c72851bfaa15d213f23f32b39291 | p@chr11:1283367..1283377, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr3:124535316..124535340,+#_9f67c72851bfaa15d213f23f32b39291 | p@chr3:124535316..124535340, + |
