UBERON:0003051: Difference between revisions
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|name=ear vesicle | |name=ear vesicle | ||
|namespace= | |namespace= | ||
|def="The saccular invagination of ectoderm from which the vertebrate inner ear develops[BTO]. Epithelial sac present beside the fifth rhombomere; forms the semicircular canals dorsally and the otolith organs ventrally, and houses the acoustico-vestibular sensory epithelia (maculae) of hair cells[ZFA]. epithelial sac of invaginated ectoderm formed from the otic placode that gives rise to the structures of the inner ear[MP]" [BTO:0002661, MP:0009806, Wikipedia: | |def="The saccular invagination of ectoderm from which the vertebrate inner ear develops[BTO]. Epithelial sac present beside the fifth rhombomere; forms the semicircular canals dorsally and the otolith organs ventrally, and houses the acoustico-vestibular sensory epithelia (maculae) of hair cells[ZFA]. epithelial sac of invaginated ectoderm formed from the otic placode that gives rise to the structures of the inner ear[MP]" [BTO:0002661, MP:0009806, Wikipedia:Otic_vesicle, ZFIN:curator] | ||
|xref=AAO:0011080;;BTO:0002661;;EHDAA2:0001342;;EMAPA:16669;;http://upload.wikimedia.org/wikipedia/commons/thumb/2/2d/Gray40.png/200px-Gray40.png;;ncithesaurus:Otic_Vesicle;;SCTID:308792006;;VHOG:0001148;;XAO:0000006;;ZFA:0000051 | |xref=AAO:0011080;;BTO:0002661;;EHDAA2:0001342;;EMAPA:16669;;http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray40.png;;http://upload.wikimedia.org/wikipedia/commons/thumb/2/2d/Gray40.png/200px-Gray40.png;;ncithesaurus:Otic_Vesicle;;SCTID:308792006;;TAO:0000051;;VHOG:0001148;;XAO:0000006;;ZFA:0000051 | ||
|is_a=UBERON: | |is_a=UBERON:0005085;;UBERON:0005291;;UBERON:0007497;;UBERON:0010314;;UBERON:0010371 | ||
|synonym="auditory vesicle" RELATED [BTO:0002661];;"otic vesicle" EXACT [];;"otocyst" RELATED [];;"OV" RELATED [] | |synonym="auditory vesicle" RELATED [BTO:0002661];;"otic vesicle" EXACT [];;"otocyst" RELATED [];;"OV" RELATED [] | ||
|comment= | |comment= | ||
| Line 14: | Line 14: | ||
|obo_creation_date= | |obo_creation_date= | ||
|subset=vertebrate_core | |subset=vertebrate_core | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Epithelial sac present beside the fifth rhombomere; forms the semicircular canals dorsally and the otolith organs ventrally, and houses the acoustico-vestibular sensory epithelia (maculae) of hair cells. Kimmel et al, 1995. (Also see Anatomical Atlas entry for ear by T. Whitfield.)[TAO]" xsd:string | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 17:02, 26 June 2012
| Name: | ear vesicle | ||
|---|---|---|---|
| Definition: | "The saccular invagination of ectoderm from which the vertebrate inner ear develops[BTO]. Epithelial sac present beside the fifth rhombomere; forms the semicircular canals dorsally and the otolith organs ventrally, and houses the acoustico-vestibular sensory epithelia (maculae) of hair cells[ZFA]. epithelial sac of invaginated ectoderm formed from the otic placode that gives rise to the structures of the inner ear[MP]" [BTO:0002661, MP:0009806, Wikipedia:Otic_vesicle, ZFIN:curator] | ||
| Xrefs: |
| ||
| Synonyms: |
"auditory vesicle" RELATED [BTO:0002661] "otic vesicle" EXACT [] "otocyst" RELATED [] "OV" RELATED [] | ||
| Alt_id: |
UBERON:0004373 UBERON:XAO_0000006-ZFA_0000051 | ||
| Subset: | vertebrate_core |
Gray40.png]
200px-Gray40.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0005085(ectodermal placode),UBERON:0005291(embryonic tissue),UBERON:0007497(developing epithelial placode),UBERON:0010314(structure with developmental contribution from neural crest),UBERON:0010371(ecto-epithelium) |
|---|
Children
| develops from: | UBERON:0001846 (internal ear),UBERON:0012175 (acoustico-facial VII-VIII ganglion complex) |
|---|---|
| part of: | UBERON:0005641 (otocyst epithelium) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003051 (ear vesicle), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.87e-86 | FFCP PHASE2:Mm9::chr5:144115382..144115389,+#_75fc3970308be340c9f348f4c3017776 | p@chr5:144115382..144115389, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr5:30710455..30710464,-#_75fc3970308be340c9f348f4c3017776 | p9@Otof |
| 1.87e-86 | FFCP PHASE2:Mm9::chr13:58283583..58283607,-#_75fc3970308be340c9f348f4c3017776 | p@chr13:58283583..58283607, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42207375..42207384,-#_75fc3970308be340c9f348f4c3017776 | p@chr9:42207375..42207384, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:67011956..67011967,+#_75fc3970308be340c9f348f4c3017776 | p1@Gm1322 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:93235253..93235264,+#_75fc3970308be340c9f348f4c3017776 | p@chr1:93235253..93235264, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr11:4689837..4689845,-#_75fc3970308be340c9f348f4c3017776 | p@chr11:4689837..4689845, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr8:94180607..94180619,-#_75fc3970308be340c9f348f4c3017776 | p@chr8:94180607..94180619, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr17:31335953..31335957,-#_75fc3970308be340c9f348f4c3017776 | p3@Tmprss3 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:154459231..154459240,+#_75fc3970308be340c9f348f4c3017776 | p@chr3:154459231..154459240, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr13:78322370..78322376,-#_75fc3970308be340c9f348f4c3017776 | p4@uc007rhb.1 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:182528371..182528385,+#_75fc3970308be340c9f348f4c3017776 | p@chr1:182528371..182528385, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:141605556..141605563,-#_75fc3970308be340c9f348f4c3017776 | p@chr7:141605556..141605563, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:154246932..154246939,+#_75fc3970308be340c9f348f4c3017776 | p7@Glt25d2 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr14:102297747..102297765,+#_75fc3970308be340c9f348f4c3017776 | p@chr14:102297747..102297765, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr17:27252925..27252939,+#_75fc3970308be340c9f348f4c3017776 | p@chr17:27252925..27252939, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:141605556..141605563,-#_75fc3970308be340c9f348f4c3017776 | p@chr7:141605556..141605563, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:194818647..194818660,-#_75fc3970308be340c9f348f4c3017776 | p@chr1:194818647..194818660, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr12:13572961..13572974,+#_75fc3970308be340c9f348f4c3017776 | p@chr12:13572961..13572974, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr19:22767090..22767099,+#_75fc3970308be340c9f348f4c3017776 | p18@Trpm3 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr14:102297747..102297765,+#_75fc3970308be340c9f348f4c3017776 | p@chr14:102297747..102297765, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr15:65641741..65641748,+#_75fc3970308be340c9f348f4c3017776 | p@chr15:65641741..65641748, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:139597684..139597691,+#_75fc3970308be340c9f348f4c3017776 | p@chr7:139597684..139597691, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:14685072..14685084,+#_75fc3970308be340c9f348f4c3017776 | p41@Cacnb2 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:136942131..136942142,-#_75fc3970308be340c9f348f4c3017776 | p6@Jag1 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr18:38104702..38104718,-#_75fc3970308be340c9f348f4c3017776 | p@chr18:38104702..38104718, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr10:81091447..81091464,+#_75fc3970308be340c9f348f4c3017776 | p9@Ankrd24 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr13:37195838..37195870,-#_75fc3970308be340c9f348f4c3017776 | p@chr13:37195838..37195870, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr15:103146966..103146971,-#_75fc3970308be340c9f348f4c3017776 | p@chr15:103146966..103146971, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr6:113251570..113251578,+#_75fc3970308be340c9f348f4c3017776 | p@chr6:113251570..113251578, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:27964761..27964768,+#_75fc3970308be340c9f348f4c3017776 | p@chr7:27964761..27964768, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:9811162..9811171,-#_75fc3970308be340c9f348f4c3017776 | p2@9230102O04Rik |
| 1.87e-86 | FFCP PHASE1:Mm9::chr10:107156949..107156956,-#_75fc3970308be340c9f348f4c3017776 | p3@Ptprq |
| 1.87e-86 | FFCP PHASE2:Mm9::chr11:94371127..94371139,-#_75fc3970308be340c9f348f4c3017776 | p@chr11:94371127..94371139, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr8:13414289..13414295,+#_75fc3970308be340c9f348f4c3017776 | p@chr8:13414289..13414295, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr19:55255206..55255223,+#_75fc3970308be340c9f348f4c3017776 | p1@Tectb |
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:78257491..78257498,+#_75fc3970308be340c9f348f4c3017776 | p@chr13:78257491..78257498, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr15:89215319..89215330,+#_75fc3970308be340c9f348f4c3017776 | p@chr15:89215319..89215330, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:109052297..109052300,-#_75fc3970308be340c9f348f4c3017776 | p2@Tomt |
| 1.87e-86 | FFCP PHASE2:Mm9::chr5:30710416..30710440,-#_75fc3970308be340c9f348f4c3017776 | p2@Otof |
| 1.87e-86 | FFCP PHASE2:Mm9::chr10:107156949..107156956,-#_75fc3970308be340c9f348f4c3017776 | p3@Ptprq |
| 1.87e-86 | FFCP PHASE2:Mm9::chr6:29428397..29428407,-#_75fc3970308be340c9f348f4c3017776 | p@chr6:29428397..29428407, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr4:115556939..115556945,+#_75fc3970308be340c9f348f4c3017776 | p4@Kncn |
| 1.87e-86 | FFCP PHASE2:Mm9::chr17:13983095..13983100,+#_75fc3970308be340c9f348f4c3017776 | p@chr17:13983095..13983100, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:75320183..75320189,+#_75fc3970308be340c9f348f4c3017776 | p@chr2:75320183..75320189, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:93218694..93218705,+#_75fc3970308be340c9f348f4c3017776 | p1@Espnl |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:94627290..94627299,-#_75fc3970308be340c9f348f4c3017776 | p@chr1:94627290..94627299, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr12:109905468..109905474,+#_75fc3970308be340c9f348f4c3017776 | p@chr12:109905468..109905474, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr16:93971367..93971379,-#_75fc3970308be340c9f348f4c3017776 | p@chr16:93971367..93971379, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:16651649..16651655,+#_75fc3970308be340c9f348f4c3017776 | p@chr1:16651649..16651655, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr19:22767090..22767099,+#_75fc3970308be340c9f348f4c3017776 | p18@Trpm3 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr18:81314626..81314636,+#_75fc3970308be340c9f348f4c3017776 | p@chr18:81314626..81314636, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:75320183..75320189,+#_75fc3970308be340c9f348f4c3017776 | p@chr2:75320183..75320189, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:60561636..60561645,-#_75fc3970308be340c9f348f4c3017776 | p@chr1:60561636..60561645, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:43699188..43699216,+#_75fc3970308be340c9f348f4c3017776 | p@chr13:43699188..43699216, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:121206695..121206711,-#_75fc3970308be340c9f348f4c3017776 | p1@Strc |
| 1.87e-86 | FFCP PHASE1:Mm9::chr6:30619443..30619450,-#_75fc3970308be340c9f348f4c3017776 | p13@Tsga14 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr6:113251606..113251613,+#_75fc3970308be340c9f348f4c3017776 | p@chr6:113251606..113251613, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:170417150..170417155,-#_75fc3970308be340c9f348f4c3017776 | p@chr2:170417150..170417155, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr15:65641779..65641790,+#_75fc3970308be340c9f348f4c3017776 | p@chr15:65641779..65641790, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr18:66033526..66033539,-#_75fc3970308be340c9f348f4c3017776 | p@chr18:66033526..66033539, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr14:31283085..31283097,-#_75fc3970308be340c9f348f4c3017776 | p@chr14:31283085..31283097, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:29733825..29733837,-#_75fc3970308be340c9f348f4c3017776 | p@chr7:29733825..29733837, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr3:69811590..69811601,+#_75fc3970308be340c9f348f4c3017776 | p1@Otol1 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr16:96494788..96494801,+#_75fc3970308be340c9f348f4c3017776 | p12@B3galt5 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr12:13508015..13508019,+#_75fc3970308be340c9f348f4c3017776 | p@chr12:13508015..13508019, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr16:45693840..45693856,-#_75fc3970308be340c9f348f4c3017776 | p1@Tmprss7 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr17:13983198..13983203,+#_75fc3970308be340c9f348f4c3017776 | p@chr17:13983198..13983203, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr10:107349392..107349413,-#_75fc3970308be340c9f348f4c3017776 | p2@Otogl |
| 1.87e-86 | FFCP PHASE1:Mm9::chr15:12848147..12848162,+#_75fc3970308be340c9f348f4c3017776 | p@chr15:12848147..12848162, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr3:154459231..154459240,+#_75fc3970308be340c9f348f4c3017776 | p@chr3:154459231..154459240, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:67011956..67011967,+#_75fc3970308be340c9f348f4c3017776 | p1@Gm1322 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42207998..42208009,-#_75fc3970308be340c9f348f4c3017776 | p6@Tecta |
| 1.87e-86 | FFCP PHASE1:Mm9::chr6:86745686..86745727,-#_75fc3970308be340c9f348f4c3017776 | p@chr6:86745686..86745727, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:69811590..69811601,+#_75fc3970308be340c9f348f4c3017776 | p1@Otol1 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr10:80806020..80806031,-#_75fc3970308be340c9f348f4c3017776 | p3@Gipc3 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr10:107349392..107349413,-#_75fc3970308be340c9f348f4c3017776 | p2@Otogl |
| 1.87e-86 | FFCP PHASE1:Mm9::chr11:102123554..102123566,+#_75fc3970308be340c9f348f4c3017776 | p4@BC030867 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr16:96494788..96494801,+#_75fc3970308be340c9f348f4c3017776 | p12@B3galt5 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42207998..42208009,-#_75fc3970308be340c9f348f4c3017776 | p6@Tecta |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:94627290..94627299,-#_75fc3970308be340c9f348f4c3017776 | p@chr1:94627290..94627299, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr13:43699228..43699239,+#_75fc3970308be340c9f348f4c3017776 | p@chr13:43699228..43699239, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr15:58022966..58022995,-#_75fc3970308be340c9f348f4c3017776 | p@chr15:58022966..58022995, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42207397..42207408,-#_75fc3970308be340c9f348f4c3017776 | p@chr9:42207397..42207408, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr8:125802236..125802251,-#_75fc3970308be340c9f348f4c3017776 | p3@Fanca |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:121206677..121206683,-#_75fc3970308be340c9f348f4c3017776 | p3@Strc |
| 1.87e-86 | FFCP PHASE1:Mm9::chr11:75421384..75421397,+#_75fc3970308be340c9f348f4c3017776 | p@chr11:75421384..75421397, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:92087926..92087938,+#_75fc3970308be340c9f348f4c3017776 | p2@Plscr5 |
| 1.87e-86 | FFCP PHASE2:Mm9::chrX:154140781..154140788,+#_75fc3970308be340c9f348f4c3017776 | p@chrX:154140781..154140788, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:172843847..172843880,-#_75fc3970308be340c9f348f4c3017776 | p@chr1:172843847..172843880, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42207397..42207408,-#_75fc3970308be340c9f348f4c3017776 | p@chr9:42207397..42207408, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:78523144..78523177,+#_75fc3970308be340c9f348f4c3017776 | p@chr1:78523144..78523177, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:48087761..48087775,-#_75fc3970308be340c9f348f4c3017776 | p@chr13:48087761..48087775, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:41495920..41495928,-#_75fc3970308be340c9f348f4c3017776 | p@chr9:41495920..41495928, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr11:4689776..4689785,-#_75fc3970308be340c9f348f4c3017776 | p@chr11:4689776..4689785, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr4:133802857..133802884,+#_75fc3970308be340c9f348f4c3017776 | p@chr4:133802857..133802884, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:154459246..154459253,+#_75fc3970308be340c9f348f4c3017776 | p@chr3:154459246..154459253, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr13:78322383..78322395,-#_75fc3970308be340c9f348f4c3017776 | p2@uc007rhb.1 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:182528388..182528403,+#_75fc3970308be340c9f348f4c3017776 | p@chr1:182528388..182528403, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:53464168..53464175,+#_75fc3970308be340c9f348f4c3017776 | p@chr2:53464168..53464175, + |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Epithelial sac present beside the fifth rhombomere; forms the semicircular canals dorsally and the otolith organs ventrally, and houses the acoustico-vestibular sensory epithelia (maculae) of hair cells. Kimmel et al, 1995. (Also see Anatomical Atlas entry for ear by T. Whitfield.)[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
