CL:0000047: Difference between revisions
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|id=CL:0000047 | |id=CL:0000047 | ||
|name=neuronal stem cell | |name=neuronal stem cell | ||
|namespace=efo | |namespace=cell;;efo | ||
|def="Neural stem cell is characterized as an undifferentiated cell that originates from the neuroectoderm and has the capacity both to perpetually self-renew without differentiating and to generate multiple types of lineage-restricted progenitors." [GOC:tfm, http://en.wikipedia.org/wiki/Neural_stem_cell, MESH:D058953, PMID:15247488] | |def="Neural stem cell is characterized as an undifferentiated cell that originates from the neuroectoderm and has the capacity both to perpetually self-renew without differentiating and to generate multiple types of lineage-restricted progenitors." [GOC:tfm, http://en.wikipedia.org/wiki/Neural_stem_cell, MESH:D058953, PMID:15247488] | ||
|xref=BTO:0002881;;FMA:86684 | |xref=BTO:0002881;;FMA:86684 | ||
|is_a= | |is_a=CL:0000048 | ||
|synonym="neural stem cell" EXACT [];;"NSC" EXACT [] | |synonym="neural stem cell" EXACT [];;"NSC" EXACT [] | ||
|comment= | |comment= | ||
| Line 14: | Line 14: | ||
|obo_creation_date= | |obo_creation_date= | ||
|subset= | |subset= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 17:24, 26 June 2012
| Name: | neuronal stem cell | ||
|---|---|---|---|
| Namespace: | cell;;efo | ||
| Definition: | "Neural stem cell is characterized as an undifferentiated cell that originates from the neuroectoderm and has the capacity both to perpetually self-renew without differentiating and to generate multiple types of lineage-restricted progenitors." [GOC:tfm, http://en.wikipedia.org/wiki/Neural_stem_cell, MESH:D058953, PMID:15247488] | ||
| Xrefs: |
| ||
| Synonyms: |
"neural stem cell" EXACT [] "NSC" EXACT [] |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000048(multi fate stem cell) |
|---|
Children
| is a: | CL:0000031 (neuroblast) |
|---|---|
| derives from: | FF:0000120 (human neural stem cell sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11275-116H6 (Neural stem cells, donor1)
- 11352-117H2 (Neural stem cells, donor2)
- 11424-118G2
Mouse (Mus musculus)
- 11275-116H6 (Neural stem cells, donor1)
- 11352-117H2 (Neural stem cells, donor2)
- 11424-118G2
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000047 (neuronal stem cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 4.33e-86 | FFCP PHASE2:Hg19::chr12:86727911..86727925,-#_5694c65be0e63fe2317cda232095142e | p@chr12:86727911..86727925, - |
| 4.33e-86 | FFCP PHASE1:Hg19::chr12:86727911..86727925,-#_5694c65be0e63fe2317cda232095142e | p@chr12:86727911..86727925, - |
| 4.74e-79 | FFCP PHASE2:Hg19::chr9:100199938..100199951,-#_9b01687514c12af442aadfe29e56ded5 | p@chr9:100199938..100199951, - |
| 4.74e-79 | FFCP PHASE1:Hg19::chr9:76707423..76707428,+#_9b01687514c12af442aadfe29e56ded5 | p@chr9:76707423..76707428, + |
| 4.74e-79 | FFCP PHASE1:Hg19::chr9:100199938..100199951,-#_9b01687514c12af442aadfe29e56ded5 | p@chr9:100199938..100199951, - |
| 4.74e-79 | FFCP PHASE2:Hg19::chr9:76707423..76707428,+#_9b01687514c12af442aadfe29e56ded5 | p@chr9:76707423..76707428, + |
| 3.11e-74 | FFCP PHASE1:Hg19::chr6:18759117..18759122,-#_0fe4ae294ffafb473460bef2c47daefc | p@chr6:18759117..18759122, - |
| 3.11e-74 | FFCP PHASE1:Hg19::chr10:74804784..74804793,-#_0fe4ae294ffafb473460bef2c47daefc | p@chr10:74804784..74804793, - |
| 3.11e-74 | FFCP PHASE1:Hg19::chr7:89853761..89853768,+#_0fe4ae294ffafb473460bef2c47daefc | p@chr7:89853761..89853768, + |
| 3.11e-74 | FFCP PHASE2:Hg19::chr3:162430587..162430591,+#_0fe4ae294ffafb473460bef2c47daefc | p@chr3:162430587..162430591, + |
| 3.11e-74 | FFCP PHASE2:Hg19::chr7:93269596..93269602,+#_0fe4ae294ffafb473460bef2c47daefc | p@chr7:93269596..93269602, + |
| 3.11e-74 | FFCP PHASE1:Hg19::chr8:494169..494176,+#_0fe4ae294ffafb473460bef2c47daefc | p@chr8:494169..494176, + |
| 3.11e-74 | FFCP PHASE2:Hg19::chr12:23738971..23738975,+#_0fe4ae294ffafb473460bef2c47daefc | p@chr12:23738971..23738975, + |
| 3.11e-74 | FFCP PHASE2:Hg19::chr6:121759714..121759721,+#_0fe4ae294ffafb473460bef2c47daefc | p@chr6:121759714..121759721, + |
| 3.11e-74 | FFCP PHASE2:Hg19::chr10:63305248..63305260,-#_0fe4ae294ffafb473460bef2c47daefc | p@chr10:63305248..63305260, - |
| 3.11e-74 | FFCP PHASE2:Hg19::chr7:89853761..89853768,+#_0fe4ae294ffafb473460bef2c47daefc | p@chr7:89853761..89853768, + |
| 3.11e-74 | FFCP PHASE1:Hg19::chr12:23738971..23738975,+#_0fe4ae294ffafb473460bef2c47daefc | p@chr12:23738971..23738975, + |
| 3.11e-74 | FFCP PHASE1:Hg19::chr6:121759714..121759721,+#_0fe4ae294ffafb473460bef2c47daefc | p@chr6:121759714..121759721, + |
| 3.11e-74 | FFCP PHASE2:Hg19::chr6:18759117..18759122,-#_0fe4ae294ffafb473460bef2c47daefc | p@chr6:18759117..18759122, - |
| 3.11e-74 | FFCP PHASE2:Hg19::chr8:494169..494176,+#_0fe4ae294ffafb473460bef2c47daefc | p@chr8:494169..494176, + |
| 3.11e-74 | FFCP PHASE1:Hg19::chr7:93269596..93269602,+#_0fe4ae294ffafb473460bef2c47daefc | p@chr7:93269596..93269602, + |
| 3.11e-74 | FFCP PHASE2:Hg19::chr10:74804784..74804793,-#_0fe4ae294ffafb473460bef2c47daefc | p@chr10:74804784..74804793, - |
| 3.11e-74 | FFCP PHASE2:Hg19::chr1:178235815..178235824,-#_0fe4ae294ffafb473460bef2c47daefc | p@chr1:178235815..178235824, - |
| 3.11e-74 | FFCP PHASE1:Hg19::chr3:162430587..162430591,+#_0fe4ae294ffafb473460bef2c47daefc | p@chr3:162430587..162430591, + |
| 3.11e-74 | FFCP PHASE1:Hg19::chr1:178235815..178235824,-#_0fe4ae294ffafb473460bef2c47daefc | p@chr1:178235815..178235824, - |
| 3.11e-74 | FFCP PHASE1:Hg19::chr10:63305248..63305260,-#_0fe4ae294ffafb473460bef2c47daefc | p@chr10:63305248..63305260, - |
| 2.87e-71 | FFCP PHASE2:Hg19::chr1:33231268..33231284,+#_b6e96031b2ffb2ed36f92a7f84babd7f | p20@KIAA1522 |
| 2.87e-71 | FFCP PHASE1:Hg19::chr1:33231268..33231284,+#_b6e96031b2ffb2ed36f92a7f84babd7f | p20@KIAA1522 |
| 2.2e-70 | FFCP PHASE1:Mm9::chr8:125944624..125944663,+#_73a69d768287c47c29653b27ae7ec19b | p@chr8:125944624..125944663, + |
| 2.2e-70 | FFCP PHASE2:Mm9::chr8:125944624..125944663,+#_73a69d768287c47c29653b27ae7ec19b | p@chr8:125944624..125944663, + |
| 1.41e-68 | FFCP PHASE2:Hg19::chr7:137030541..137030575,-#_de949a643fb51487a5f76a8e86f382aa | p@chr7:137030541..137030575, - |
| 1.41e-68 | FFCP PHASE1:Hg19::chr7:137030541..137030575,-#_de949a643fb51487a5f76a8e86f382aa | p@chr7:137030541..137030575, - |
| 2.46e-68 | FFCP PHASE1:Hg19::chr17:76266195..76266208,-#_15b2727f9d999c0cc6a1611ef6d2370c | p@chr17:76266195..76266208, - |
| 2.46e-68 | FFCP PHASE2:Hg19::chr17:76266195..76266208,-#_15b2727f9d999c0cc6a1611ef6d2370c | p@chr17:76266195..76266208, - |
| 7.15e-66 | FFCP PHASE2:Hg19::chrX:91359754..91359757,-#_8860963d02cc21928a5d45d71f461661 | p2@ENST00000540909, p2@uc004efp.1 |
| 7.15e-66 | FFCP PHASE1:Hg19::chrX:91359754..91359757,-#_8860963d02cc21928a5d45d71f461661 | p2@ENST00000540909, p2@uc004efp.1 |
| 1.0e-65 | FFCP PHASE1:Hg19::chr3:38289177..38289184,+#_a3ee4aaad50f1221b7078bb39f7050fc | p@chr3:38289177..38289184, + |
| 1.0e-65 | FFCP PHASE2:Hg19::chr3:38289177..38289184,+#_a3ee4aaad50f1221b7078bb39f7050fc | p@chr3:38289177..38289184, + |
| 4.4e-62 | FFCP PHASE2:Hg19::chr1:142537912..142537938,-#_e8e28732d38f1c59865d9413f49e11d0 | p@chr1:142537912..142537938, - |
| 4.4e-62 | FFCP PHASE1:Hg19::chr20:20472232..20472244,-#_e8e28732d38f1c59865d9413f49e11d0 | p@chr20:20472232..20472244, - |
| 4.4e-62 | FFCP PHASE1:Hg19::chr1:142537912..142537938,-#_e8e28732d38f1c59865d9413f49e11d0 | p@chr1:142537912..142537938, - |
| 4.4e-62 | FFCP PHASE2:Hg19::chr20:20472232..20472244,-#_e8e28732d38f1c59865d9413f49e11d0 | p@chr20:20472232..20472244, - |
| 4.99e-62 | FFCP PHASE2:Hg19::chr2:104496621..104496635,-#_b599d0aed75757bd60b683f9983d5326 | p1@ENST00000455716 |
| 4.99e-62 | FFCP PHASE1:Hg19::chr2:104496621..104496635,-#_b599d0aed75757bd60b683f9983d5326 | p1@ENST00000455716 |
| 2.25e-61 | FFCP PHASE1:Hg19::chr5:135540733..135540788,-#_5245a1ec3e36d094dfee72602e301cb0 | p@chr5:135540733..135540788, - |
| 2.25e-61 | FFCP PHASE2:Hg19::chr5:135540733..135540788,-#_5245a1ec3e36d094dfee72602e301cb0 | p@chr5:135540733..135540788, - |
| 1.11e-58 | FFCP PHASE2:Mm9::chr7:109167666..109167667,+#_dc851c3cc86c0372ad56686e7f321e20 | p@chr7:109167666..109167667, + |
| 1.11e-58 | FFCP PHASE1:Mm9::chr7:109167666..109167667,+#_dc851c3cc86c0372ad56686e7f321e20 | p@chr7:109167666..109167667, + |
| 1.97e-58 | FFCP PHASE1:Hg19::chr21:33976809..33976828,-#_4ab225861a104b3242e19a6b528186e1 | p9@C21orf59 |
| 1.97e-58 | FFCP PHASE2:Hg19::chr21:33976809..33976828,-#_4ab225861a104b3242e19a6b528186e1 | p9@C21orf59 |
| 5.77e-57 | FFCP PHASE1:Hg19::chr7:23146271..23146285,+#_28b60dbf5b6a196a59c10e56f82ec1b3 | p4@KLHL7 |
| 5.77e-57 | FFCP PHASE2:Hg19::chr7:23146271..23146285,+#_28b60dbf5b6a196a59c10e56f82ec1b3 | p4@KLHL7 |
| 5.95e-57 | FFCP PHASE2:Hg19::chr6:88877062..88877073,-#_ff2c066a000af62ef1d3ab1212dd2f2b | p3@BC037581 |
| 5.95e-57 | FFCP PHASE1:Hg19::chr6:88877062..88877073,-#_ff2c066a000af62ef1d3ab1212dd2f2b | p3@BC037581 |
| 9.15e-57 | FFCP PHASE1:Hg19::chr1:142537706..142537723,-#_dd4dc1de5ebf75cd9e4298b830bce8aa | p@chr1:142537706..142537723, - |
| 9.15e-57 | FFCP PHASE2:Hg19::chr1:142537706..142537723,-#_dd4dc1de5ebf75cd9e4298b830bce8aa | p@chr1:142537706..142537723, - |
| 1.63e-56 | FFCP PHASE1:Hg19::chr17:37763867..37763873,-#_cc3a349665c6d5e6e9adbc908a6ee347 | p@chr17:37763867..37763873, - |
| 1.63e-56 | FFCP PHASE2:Hg19::chr17:37763867..37763873,-#_cc3a349665c6d5e6e9adbc908a6ee347 | p@chr17:37763867..37763873, - |
| 2.85e-56 | FFCP PHASE2:Hg19::chr11:30605486..30605499,-#_d3302a323805fd0de0c22782adacf9ba | p@chr11:30605486..30605499, - |
| 2.85e-56 | FFCP PHASE1:Hg19::chr11:30605486..30605499,-#_d3302a323805fd0de0c22782adacf9ba | p@chr11:30605486..30605499, - |
| 4.57e-56 | FFCP PHASE2:Hg19::chr3:65939393..65939412,+#_c54670b23ee0d2b7accb3f19251de48b | p@chr3:65939393..65939412, + |
| 4.57e-56 | FFCP PHASE1:Hg19::chr3:65939393..65939412,+#_c54670b23ee0d2b7accb3f19251de48b | p@chr3:65939393..65939412, + |
| 4.57e-56 | FFCP PHASE1:Hg19::chr7:125557914..125557920,+#_c54670b23ee0d2b7accb3f19251de48b | p1@ENST00000411856 |
| 4.57e-56 | FFCP PHASE2:Hg19::chr4:187163434..187163439,+#_c54670b23ee0d2b7accb3f19251de48b | p@chr4:187163434..187163439, + |
| 4.57e-56 | FFCP PHASE2:Hg19::chr2:210164412..210164415,+#_c54670b23ee0d2b7accb3f19251de48b | p@chr2:210164412..210164415, + |
| 4.57e-56 | FFCP PHASE1:Hg19::chr4:113571661..113571692,-#_c54670b23ee0d2b7accb3f19251de48b | p1@ENST00000510655 |
| 4.57e-56 | FFCP PHASE1:Hg19::chr4:187163434..187163439,+#_c54670b23ee0d2b7accb3f19251de48b | p@chr4:187163434..187163439, + |
| 4.57e-56 | FFCP PHASE1:Hg19::chr2:210164412..210164415,+#_c54670b23ee0d2b7accb3f19251de48b | p@chr2:210164412..210164415, + |
| 4.57e-56 | FFCP PHASE2:Hg19::chr7:125557914..125557920,+#_c54670b23ee0d2b7accb3f19251de48b | p1@ENST00000411856 |
| 4.57e-56 | FFCP PHASE2:Hg19::chr1:232254205..232254216,+#_c54670b23ee0d2b7accb3f19251de48b | p@chr1:232254205..232254216, + |
| 4.57e-56 | FFCP PHASE1:Hg19::chr1:232254205..232254216,+#_c54670b23ee0d2b7accb3f19251de48b | p@chr1:232254205..232254216, + |
| 4.57e-56 | FFCP PHASE2:Hg19::chr4:113571661..113571692,-#_c54670b23ee0d2b7accb3f19251de48b | p1@ENST00000510655 |
| 5.05e-56 | FFCP PHASE1:Hg19::chr2:197791691..197791702,-#_7c662ded092fff9bc23655780ce3d16f | p8@PGAP1 |
| 5.05e-56 | FFCP PHASE2:Hg19::chr2:197791691..197791702,-#_7c662ded092fff9bc23655780ce3d16f | p8@PGAP1 |
| 5.52e-56 | FFCP PHASE1:Hg19::chr13:93868779..93868791,+#_6b88c2382bf2fda0e56e296b1827bdfe | p@chr13:93868779..93868791, + |
| 5.52e-56 | FFCP PHASE2:Hg19::chr13:93868779..93868791,+#_6b88c2382bf2fda0e56e296b1827bdfe | p@chr13:93868779..93868791, + |
| 5.52e-56 | FFCP PHASE2:Hg19::chr22:27038766..27038806,-#_6b88c2382bf2fda0e56e296b1827bdfe | p@chr22:27038766..27038806, - |
| 5.52e-56 | FFCP PHASE1:Hg19::chr22:27038766..27038806,-#_6b88c2382bf2fda0e56e296b1827bdfe | p@chr22:27038766..27038806, - |
| 6.66e-56 | FFCP PHASE1:Hg19::chr6:132234089..132234094,+#_b18196984334497e3b448f0e26fcd29e | p@chr6:132234089..132234094, + |
| 6.66e-56 | FFCP PHASE2:Hg19::chr6:132234089..132234094,+#_b18196984334497e3b448f0e26fcd29e | p@chr6:132234089..132234094, + |
| 8.04e-56 | FFCP PHASE1:Hg19::chrX:16141567..16141572,+#_bf0379266b3830f55e776cdc84996230 | p4@GRPR |
| 8.04e-56 | FFCP PHASE2:Hg19::chrX:16141567..16141572,+#_bf0379266b3830f55e776cdc84996230 | p4@GRPR |
| 8.04e-56 | FFCP PHASE1:Hg19::chr13:54688155..54688160,-#_bf0379266b3830f55e776cdc84996230 | p@chr13:54688155..54688160, - |
| 8.04e-56 | FFCP PHASE2:Hg19::chr13:54688155..54688160,-#_bf0379266b3830f55e776cdc84996230 | p@chr13:54688155..54688160, - |
| 1.12e-55 | FFCP PHASE1:Hg19::chr6:98264504..98264513,+#_498d3c25af995228e46c138d50aa78ec | p@chr6:98264504..98264513, + |
| 1.12e-55 | FFCP PHASE2:Hg19::chr6:98264504..98264513,+#_498d3c25af995228e46c138d50aa78ec | p@chr6:98264504..98264513, + |
| 1.99e-55 | FFCP PHASE1:Hg19::chr5:146257992..146258003,-#_3c440aa684f8f36775deb8c750eb50b1 | p18@PPP2R2B |
| 1.99e-55 | FFCP PHASE2:Hg19::chr5:146257992..146258003,-#_3c440aa684f8f36775deb8c750eb50b1 | p18@PPP2R2B |
| 3.23e-55 | FFCP PHASE2:Hg19::chr8:39759861..39759881,+#_74c46c59d01479efeb567939d6cfcd51 | p3@IDO1 |
| 3.23e-55 | FFCP PHASE1:Hg19::chr8:39759861..39759881,+#_74c46c59d01479efeb567939d6cfcd51 | p3@IDO1 |
| 8.29e-55 | FFCP PHASE1:Mm9::chr14:26427427..26427439,+#_4e98a3d58c5fe8e40c038beabcb95cb3 | p22@Zmiz1 |
| 8.29e-55 | FFCP PHASE2:Mm9::chr14:26427427..26427439,+#_4e98a3d58c5fe8e40c038beabcb95cb3 | p22@Zmiz1 |
| 2.41e-54 | FFCP PHASE2:Mm9::chr13:9279895..9279899,+#_797ddd90e2b92a2fb2ae060998f709ab | p@chr13:9279895..9279899, + |
| 2.41e-54 | FFCP PHASE1:Mm9::chr13:9279895..9279899,+#_797ddd90e2b92a2fb2ae060998f709ab | p@chr13:9279895..9279899, + |
| 3.73e-51 | FFCP PHASE1:Hg19::chrX:110654147..110654194,-#_2024da4ed788d3a0ad0c35151b59af43 | p4@DCX |
| 3.73e-51 | FFCP PHASE2:Hg19::chrX:110654147..110654194,-#_2024da4ed788d3a0ad0c35151b59af43 | p4@DCX |
| 1.31e-50 | FFCP PHASE1:Mm9::chr8:125944694..125944740,+#_e1e4a0b048fe46695dc0b71b14fad239 | p@chr8:125944694..125944740, + |
| 1.31e-50 | FFCP PHASE2:Mm9::chr8:125944694..125944740,+#_e1e4a0b048fe46695dc0b71b14fad239 | p@chr8:125944694..125944740, + |
| 1.38e-50 | FFCP PHASE2:Mm9::chr3:55849731..55849735,-#_dec3f1c97a68a95798ef081f1f8885a1 | p@chr3:55849731..55849735, - |
| 1.38e-50 | FFCP PHASE1:Mm9::chr3:55849731..55849735,-#_dec3f1c97a68a95798ef081f1f8885a1 | p@chr3:55849731..55849735, - |
