CL:0002419: Difference between revisions
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|id=CL:0002419 | |id=CL:0002419 | ||
|name=mature T cell | |name=mature T cell | ||
|namespace=efo | |namespace=cell;;efo | ||
|def="A T cell that expresses a T cell receptor complex and has completed T cell selection." [GOC:tfm] | |def="A T cell that expresses a T cell receptor complex and has completed T cell selection." [GOC:tfm] | ||
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|obo_creation_date=2010-10-12T01:56:15Z | |obo_creation_date=2010-10-12T01:56:15Z | ||
|subset= | |subset= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
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|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 17:27, 26 June 2012
| Name: | mature T cell |
|---|---|
| Namespace: | cell;;efo |
| Definition: | "A T cell that expresses a T cell receptor complex and has completed T cell selection." [GOC:tfm] |
| Synonyms: |
"CD3e-positive T cell" EXACT [] "CD3epsilon T cell" RELATED [] "mature T-cell" EXACT [] |
| Created by: | tmeehan |
| Creation date: | 2010-10-12T01:56:15Z |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000084(T cell) |
|---|
Children
| is a: | CL:0000791 (mature alpha-beta T cell),CL:0000813 (memory T cell),CL:0000815 (regulatory T cell),CL:0000898 (naive T cell),CL:0000911 (effector T cell) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10768-110F3
- 10777-110G3 (NK T cell leukemia cell line:KHYG-1)
- 11225-116C1 (CD4+ T Cells, donor1)
- 11226-116C2 (CD8+ T Cells, donor1)
- 11306-117C1 (CD4+ T Cells, donor2)
- 11307-117C2 (CD8+ T Cells, donor2)
- 11382-118B5 (CD4+ T Cells, donor3)
- 11383-118B6 (CD8+ T Cells, donor3)
- 11780-124A7 (CD4+CD25+CD45RA+ naive regulatory T cells, donor1)
- 11782-124A9 (CD4+CD25+CD45RA- memory regulatory T cells, donor1)
... further results Mouse (Mus musculus)
- 10768-110F3
- 10777-110G3 (NK T cell leukemia cell line:KHYG-1)
- 11225-116C1 (CD4+ T Cells, donor1)
- 11226-116C2 (CD8+ T Cells, donor1)
- 11306-117C1 (CD4+ T Cells, donor2)
- 11307-117C2 (CD8+ T Cells, donor2)
- 11382-118B5 (CD4+ T Cells, donor3)
- 11383-118B6 (CD8+ T Cells, donor3)
- 11780-124A7 (CD4+CD25+CD45RA+ naive regulatory T cells, donor1)
- 11782-124A9 (CD4+CD25+CD45RA- memory regulatory T cells, donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002419 (mature T cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 4.82e-125 | FFCP PHASE1:Hg19::chr5:35859622..35859626,+#_3f8199c8698213f6b47c061dd524a686 | p@chr5:35859622..35859626, + |
| 4.82e-125 | FFCP PHASE2:Hg19::chr5:35859622..35859626,+#_3f8199c8698213f6b47c061dd524a686 | p@chr5:35859622..35859626, + |
| 2.55e-96 | FFCP PHASE2:Hg19::chr15:89179440..89179457,-#_9ac666b7634ee804ac3bd5fd0d902218 | p@chr15:89179440..89179457, - |
| 2.55e-96 | FFCP PHASE1:Hg19::chr15:89179440..89179457,-#_9ac666b7634ee804ac3bd5fd0d902218 | p@chr15:89179440..89179457, - |
| 1.42e-94 | FFCP PHASE1:Hg19::chr5:35854487..35854499,-#_c0b2b60e6f4b6dd116149c52715f6ce1 | p@chr5:35854487..35854499, - |
| 1.42e-94 | FFCP PHASE2:Hg19::chr5:35854487..35854499,-#_c0b2b60e6f4b6dd116149c52715f6ce1 | p@chr5:35854487..35854499, - |
| 1.09e-92 | FFCP PHASE1:Hg19::chr5:35854779..35854826,+#_c8855caffc6de7c4b08d40d13e41a5b1 | p@chr5:35854779..35854826, + |
| 1.09e-92 | FFCP PHASE2:Hg19::chr5:35854779..35854826,+#_c8855caffc6de7c4b08d40d13e41a5b1 | p@chr5:35854779..35854826, + |
| 4.33e-92 | FFCP PHASE2:Hg19::chr4:103551892..103551903,-#_2e3abb35f828d39cf81ce8ed178099a6 | p@chr4:103551892..103551903, - |
| 4.33e-92 | FFCP PHASE1:Hg19::chr4:103551892..103551903,-#_2e3abb35f828d39cf81ce8ed178099a6 | p@chr4:103551892..103551903, - |
| 1.97e-90 | FFCP PHASE1:Hg19::chr5:35856882..35856909,-#_895ab90d2395ca9da95141f84fb9bf56 | p@chr5:35856882..35856909, - |
| 1.97e-90 | FFCP PHASE2:Hg19::chr5:35856882..35856909,-#_895ab90d2395ca9da95141f84fb9bf56 | p@chr5:35856882..35856909, - |
| 2.93e-90 | FFCP PHASE2:Hg19::chr18:68318174..68318193,-#_e220e3223423f72cd19cd74eff6323aa | p1@GTSCR1 |
| 2.93e-90 | FFCP PHASE1:Hg19::chr18:68318174..68318193,-#_e220e3223423f72cd19cd74eff6323aa | p1@GTSCR1 |
| 5.78e-88 | FFCP PHASE1:Hg19::chr7:97880779..97880793,+#_53fffc3c11342dda6fa71b6b66e0843d | p@chr7:97880779..97880793, + |
| 5.78e-88 | FFCP PHASE2:Hg19::chr7:97880779..97880793,+#_53fffc3c11342dda6fa71b6b66e0843d | p@chr7:97880779..97880793, + |
| 8.73e-88 | FFCP PHASE1:Hg19::chr1:25255894..25255906,+#_b05b5872683980a8bf8273fe3a786c17 | p@chr1:25255894..25255906, + |
| 8.73e-88 | FFCP PHASE2:Hg19::chr1:25255894..25255906,+#_b05b5872683980a8bf8273fe3a786c17 | p@chr1:25255894..25255906, + |
| 4.59e-87 | FFCP PHASE2:Hg19::chr2:38830433..38830444,-#_84f56a7ddc70ebfc42e3179244f91e24 | p10@HNRPLL |
| 4.59e-87 | FFCP PHASE1:Hg19::chr2:38830433..38830444,-#_84f56a7ddc70ebfc42e3179244f91e24 | p10@HNRPLL |
| 1.31e-86 | FFCP PHASE1:Mm9::chr14:54831123..54831141,+#_aa962170ee4a6abd9f15f1828b309188 | p1@ENSMUST00000103733 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr4:151490126..151490137,+#_aa962170ee4a6abd9f15f1828b309188 | p3@Tnfrsf25 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr4:32339511..32339518,+#_aa962170ee4a6abd9f15f1828b309188 | p@chr4:32339511..32339518, + |
| 1.31e-86 | FFCP PHASE2:Mm9::chr14:54150421..54150439,+#_aa962170ee4a6abd9f15f1828b309188 | p1@uc007tsm.1 |
| 1.31e-86 | FFCP PHASE2:Mm9::chr6:48637679..48637692,+#_aa962170ee4a6abd9f15f1828b309188 | p@chr6:48637679..48637692, + |
| 1.31e-86 | FFCP PHASE2:Mm9::chr19:10869146..10869168,-#_aa962170ee4a6abd9f15f1828b309188 | p@chr19:10869146..10869168, - |
| 1.31e-86 | FFCP PHASE1:Mm9::chr14:54150421..54150439,+#_aa962170ee4a6abd9f15f1828b309188 | p1@uc007tsm.1 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr11:99015330..99015341,-#_aa962170ee4a6abd9f15f1828b309188 | p@chr11:99015330..99015341, - |
| 1.31e-86 | FFCP PHASE1:Mm9::chr19:10869146..10869168,-#_aa962170ee4a6abd9f15f1828b309188 | p@chr19:10869146..10869168, - |
| 1.31e-86 | FFCP PHASE2:Mm9::chr4:32339511..32339518,+#_aa962170ee4a6abd9f15f1828b309188 | p@chr4:32339511..32339518, + |
| 1.31e-86 | FFCP PHASE2:Mm9::chr11:99015330..99015341,-#_aa962170ee4a6abd9f15f1828b309188 | p@chr11:99015330..99015341, - |
| 1.31e-86 | FFCP PHASE2:Mm9::chr14:54831123..54831141,+#_aa962170ee4a6abd9f15f1828b309188 | p1@ENSMUST00000103733 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr6:48637679..48637692,+#_aa962170ee4a6abd9f15f1828b309188 | p@chr6:48637679..48637692, + |
| 1.31e-86 | FFCP PHASE2:Mm9::chr4:151490126..151490137,+#_aa962170ee4a6abd9f15f1828b309188 | p3@Tnfrsf25 |
| 2.98e-86 | FFCP PHASE2:Hg19::chr10:14611822..14611844,-#_df2710040254bdd14ebb689a22c349a1 | p@chr10:14611822..14611844, - |
| 2.98e-86 | FFCP PHASE1:Hg19::chr10:14611822..14611844,-#_df2710040254bdd14ebb689a22c349a1 | p@chr10:14611822..14611844, - |
| 3.57e-86 | FFCP PHASE2:Hg19::chr4:90205082..90205093,+#_2b919caa0cc131db00603efc6cf6eec6 | p@chr4:90205082..90205093, + |
| 3.57e-86 | FFCP PHASE1:Hg19::chr4:90205082..90205093,+#_2b919caa0cc131db00603efc6cf6eec6 | p@chr4:90205082..90205093, + |
| 9.89e-85 | FFCP PHASE1:Hg19::chr16:57162957..57162973,+#_34cbfd5e789bbe07242c0df533dbbc5f | p@chr16:57162957..57162973, + |
| 9.89e-85 | FFCP PHASE2:Hg19::chr16:57162957..57162973,+#_34cbfd5e789bbe07242c0df533dbbc5f | p@chr16:57162957..57162973, + |
| 1.01e-83 | FFCP PHASE1:Hg19::chr2:87053288..87053295,-#_939331a0ac358b2e1b73ca84422df189 | p@chr2:87053288..87053295, - |
| 1.01e-83 | FFCP PHASE2:Hg19::chr2:87053288..87053295,-#_939331a0ac358b2e1b73ca84422df189 | p@chr2:87053288..87053295, - |
| 1.1e-83 | FFCP PHASE2:Hg19::chr6:128299606..128299618,+#_840318736d7df227647c608701613975 | p@chr6:128299606..128299618, + |
| 1.1e-83 | FFCP PHASE2:Hg19::chr11:122709344..122709378,+#_840318736d7df227647c608701613975 | p@chr11:122709344..122709378, + |
| 1.1e-83 | FFCP PHASE1:Hg19::chr11:122709344..122709378,+#_840318736d7df227647c608701613975 | p@chr11:122709344..122709378, + |
| 1.1e-83 | FFCP PHASE1:Hg19::chr6:128299606..128299618,+#_840318736d7df227647c608701613975 | p@chr6:128299606..128299618, + |
| 1.69e-83 | FFCP PHASE1:Hg19::chr5:35780579..35780585,+#_2739ae6609522559a176bd49810e6abd | p@chr5:35780579..35780585, + |
| 1.69e-83 | FFCP PHASE2:Hg19::chr5:35780579..35780585,+#_2739ae6609522559a176bd49810e6abd | p@chr5:35780579..35780585, + |
| 1.02e-82 | FFCP PHASE1:Hg19::chr5:35859218..35859252,-#_71e5e8536e2f158099bb264f585fe4e6 | p@chr5:35859218..35859252, - |
| 1.02e-82 | FFCP PHASE2:Hg19::chr5:35859218..35859252,-#_71e5e8536e2f158099bb264f585fe4e6 | p@chr5:35859218..35859252, - |
| 1.33e-82 | FFCP PHASE2:Hg19::chr12:49375076..49375089,-#_105723773794f08f239db28c48cc4d83 | p@chr12:49375076..49375089, - |
| 1.33e-82 | FFCP PHASE1:Hg19::chr12:49375076..49375089,-#_105723773794f08f239db28c48cc4d83 | p@chr12:49375076..49375089, - |
| 3.02e-82 | FFCP PHASE2:Hg19::chr10:9060907..9060927,-#_4b35f9b5b833ebeb9705f5eb9751958c | p@chr10:9060907..9060927, - |
| 3.02e-82 | FFCP PHASE1:Hg19::chr10:9060907..9060927,-#_4b35f9b5b833ebeb9705f5eb9751958c | p@chr10:9060907..9060927, - |
| 4.05e-82 | FFCP PHASE2:Hg19::chr12:10561626..10561641,-#_445027bdacd018eda1b0d8bd9887d061 | p@chr12:10561626..10561641, - |
| 4.05e-82 | FFCP PHASE1:Hg19::chr12:10561626..10561641,-#_445027bdacd018eda1b0d8bd9887d061 | p@chr12:10561626..10561641, - |
| 4.31e-82 | FFCP PHASE2:Hg19::chr7:150178764..150178778,-#_0b6757c71fa82f953b7712d8dd71566a | p@chr7:150178764..150178778, - |
| 4.31e-82 | FFCP PHASE1:Hg19::chr7:150178764..150178778,-#_0b6757c71fa82f953b7712d8dd71566a | p@chr7:150178764..150178778, - |
| 5.81e-82 | FFCP PHASE2:Hg19::chr2:182038499..182038509,+#_9613d536073686b958f188f686f91259 | p@chr2:182038499..182038509, + |
| 5.81e-82 | FFCP PHASE1:Hg19::chr2:182038499..182038509,+#_9613d536073686b958f188f686f91259 | p@chr2:182038499..182038509, + |
| 1.02e-81 | FFCP PHASE2:Hg19::chr4:4271366..4271377,-#_fc7218fc4b7e641bd2fa36fce6692c0f | p@chr4:4271366..4271377, - |
| 1.02e-81 | FFCP PHASE1:Hg19::chr4:4271366..4271377,-#_fc7218fc4b7e641bd2fa36fce6692c0f | p@chr4:4271366..4271377, - |
| 8.22e-81 | FFCP PHASE2:Hg19::chr11:108094238..108094253,+#_90f5753969476e5fb23a7384c3cef2f2 | p10@ATM |
| 8.22e-81 | FFCP PHASE1:Hg19::chr11:108094238..108094253,+#_90f5753969476e5fb23a7384c3cef2f2 | p10@ATM |
| 2.22e-80 | FFCP PHASE2:Hg19::chr12:12867774..12867787,-#_1b2981962a9ab98268192a3473ecc694 | p@chr12:12867774..12867787, - |
| 2.22e-80 | FFCP PHASE1:Hg19::chr12:12867774..12867787,-#_1b2981962a9ab98268192a3473ecc694 | p@chr12:12867774..12867787, - |
| 8.6e-79 | FFCP PHASE1:Hg19::chr5:67571114..67571129,-#_bad98ea0bfd16cbc3f597a875499d71f | p@chr5:67571114..67571129, - |
| 8.6e-79 | FFCP PHASE2:Hg19::chr5:67571114..67571129,-#_bad98ea0bfd16cbc3f597a875499d71f | p@chr5:67571114..67571129, - |
| 2.3e-78 | FFCP PHASE1:Mm9::chr14:54811976..54811990,+#_fdac81d0c82941def06db73d5244beea | p1@ENSMUST00000103714 |
| 2.3e-78 | FFCP PHASE2:Mm9::chr14:54811976..54811990,+#_fdac81d0c82941def06db73d5244beea | p1@ENSMUST00000103714 |
| 2.3e-78 | FFCP PHASE1:Mm9::chr5:123440486..123440504,-#_fdac81d0c82941def06db73d5244beea | p@chr5:123440486..123440504, - |
| 2.3e-78 | FFCP PHASE2:Mm9::chr12:74704873..74704900,+#_fdac81d0c82941def06db73d5244beea | p@chr12:74704873..74704900, + |
| 2.3e-78 | FFCP PHASE1:Mm9::chr14:56207154..56207165,-#_fdac81d0c82941def06db73d5244beea | p@chr14:56207154..56207165, - |
| 2.3e-78 | FFCP PHASE2:Mm9::chr14:56207154..56207165,-#_fdac81d0c82941def06db73d5244beea | p@chr14:56207154..56207165, - |
| 2.3e-78 | FFCP PHASE2:Mm9::chr5:123440486..123440504,-#_fdac81d0c82941def06db73d5244beea | p@chr5:123440486..123440504, - |
| 2.3e-78 | FFCP PHASE2:Mm9::chr7:31935025..31935037,+#_fdac81d0c82941def06db73d5244beea | p@chr7:31935025..31935037, + |
| 2.3e-78 | FFCP PHASE1:Mm9::chr8:84082784..84082795,+#_fdac81d0c82941def06db73d5244beea | p@chr8:84082784..84082795, + |
| 2.3e-78 | FFCP PHASE1:Mm9::chr7:31935025..31935037,+#_fdac81d0c82941def06db73d5244beea | p@chr7:31935025..31935037, + |
| 2.3e-78 | FFCP PHASE1:Mm9::chr12:74704873..74704900,+#_fdac81d0c82941def06db73d5244beea | p@chr12:74704873..74704900, + |
| 2.3e-78 | FFCP PHASE2:Mm9::chr8:84082784..84082795,+#_fdac81d0c82941def06db73d5244beea | p@chr8:84082784..84082795, + |
| 2.56e-78 | FFCP PHASE1:Hg19::chr6:143228788..143228799,-#_99ff90eed1b944b82ff6e91b38012145 | p@chr6:143228788..143228799, - |
| 2.56e-78 | FFCP PHASE2:Hg19::chr6:143228788..143228799,-#_99ff90eed1b944b82ff6e91b38012145 | p@chr6:143228788..143228799, - |
| 2.82e-78 | FFCP PHASE1:Mm9::chr5:123440767..123440778,+#_977803ba7784ee3aa48de97499d69f2d | p@chr5:123440767..123440778, + |
| 2.82e-78 | FFCP PHASE1:Mm9::chr4:32422919..32422935,+#_977803ba7784ee3aa48de97499d69f2d | p@chr4:32422919..32422935, + |
| 2.82e-78 | FFCP PHASE2:Mm9::chr14:54838649..54838660,+#_977803ba7784ee3aa48de97499d69f2d | p@chr14:54838649..54838660, + |
| 2.82e-78 | FFCP PHASE1:Mm9::chr14:54838649..54838660,+#_977803ba7784ee3aa48de97499d69f2d | p@chr14:54838649..54838660, + |
| 2.82e-78 | FFCP PHASE2:Mm9::chr4:32422919..32422935,+#_977803ba7784ee3aa48de97499d69f2d | p@chr4:32422919..32422935, + |
| 2.82e-78 | FFCP PHASE2:Mm9::chr5:123440767..123440778,+#_977803ba7784ee3aa48de97499d69f2d | p@chr5:123440767..123440778, + |
| 3.46e-78 | FFCP PHASE1:Mm9::chr15:27786221..27786240,-#_7d1ba1edadb550f46e51983386a49963 | p@chr15:27786221..27786240, - |
| 3.46e-78 | FFCP PHASE2:Mm9::chr15:27786221..27786240,-#_7d1ba1edadb550f46e51983386a49963 | p@chr15:27786221..27786240, - |
| 4.25e-78 | FFCP PHASE2:Mm9::chr6:99215016..99215036,+#_5ba6feb498c10c80b01c50c531f83501 | p@chr6:99215016..99215036, + |
| 4.25e-78 | FFCP PHASE1:Mm9::chr3:103672068..103672090,-#_5ba6feb498c10c80b01c50c531f83501 | p@chr3:103672068..103672090, - |
| 4.25e-78 | FFCP PHASE1:Mm9::chr6:99215016..99215036,+#_5ba6feb498c10c80b01c50c531f83501 | p@chr6:99215016..99215036, + |
| 4.25e-78 | FFCP PHASE2:Mm9::chr3:103672068..103672090,-#_5ba6feb498c10c80b01c50c531f83501 | p@chr3:103672068..103672090, - |
| 5.22e-78 | FFCP PHASE2:Mm9::chr6:48634453..48634468,-#_3681775e305e5948fb2439a8f6439468 | p@chr6:48634453..48634468, - |
| 5.22e-78 | FFCP PHASE1:Mm9::chr6:48634453..48634468,-#_3681775e305e5948fb2439a8f6439468 | p@chr6:48634453..48634468, - |
| 6.45e-78 | FFCP PHASE1:Hg19::chr7:36816941..36816949,+#_deb06978ff4c8f16907139b342241761 | p@chr7:36816941..36816949, + |
| 6.45e-78 | FFCP PHASE2:Hg19::chr7:36816941..36816949,+#_deb06978ff4c8f16907139b342241761 | p@chr7:36816941..36816949, + |
| 7.86e-78 | FFCP PHASE1:Mm9::chr15:60018823..60018838,-#_f07e40d328f8820f86e930fdc2ffb104 | p5@uc007vxz.1 |
| 7.86e-78 | FFCP PHASE2:Mm9::chr15:60018823..60018838,-#_f07e40d328f8820f86e930fdc2ffb104 | p5@uc007vxz.1 |
