UBERON:0002471: Difference between revisions

Revision as of 11:17, 12 September 2014

zeugopod

Definition:

"The middle part of the limb (e.g. between the elbow and wrist)" []

Xrefs:

Synonyms:

"epipodium" EXACT [MA:th]
"middle free limb segment" EXACT [FMA:83016]
"middle limb segment" EXACT []
"middle part of limb" BROAD []
"zeugopod limb segment" EXACT [MA:th]
"zeugopodial limb segment" EXACT [MA:th]
"zeugopodium" EXACT []

Comments:

Naming conventions for pod terms under discussion within phenoscape group

Alt_id:

UBERON:MA_0002716-MIAA_0000092

Subset:

uberon_slim

Ontology association Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies. link to ontology dataset data

Parents

is_a:	UBERON:0002529(limb segment)

Children

is a:	UBERON:0003823 (hindlimb zeugopod)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

10264-104D3
10282-104F3 (skeletal muscle - soleus muscle, donor1)
10292-104G4 (achilles tendon, donor2)
10310-104I4
10320-105A5
10338-105C5

Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002471 (zeugopod), sorted by p-values Analyst: Hideya Kawaji link to source dataset human : data mouse : data

Search:

P-value	FFCP	Short description
5.42e-195	FFCP PHASE1:Hg19::chr4:186423235..186423240,-	p@chr4:186423235..186423240, -
5.42e-195	FFCP PHASE2:Hg19::chr4:85166508..85166512,+	p@chr4:85166508..85166512, +
5.42e-195	FFCP PHASE1:Hg19::chr22:25535147..25535150,+	p@chr22:25535147..25535150, +
5.42e-195	FFCP PHASE2:Hg19::chr7:128483294..128483304,+	p@chr7:128483294..128483304, +
5.42e-195	FFCP PHASE2:Hg19::chr10:97176812..97176813,+	p@chr10:97176812..97176813, +
5.42e-195	FFCP PHASE1:Hg19::chr2:179396370..179396375,-	p@chr2:179396370..179396375, -
5.42e-195	FFCP PHASE2:Hg19::chr2:179396370..179396375,-	p@chr2:179396370..179396375, -
5.42e-195	FFCP PHASE2:Hg19::chr2:76859417..76859418,+	p@chr2:76859417..76859418, +
5.42e-195	FFCP PHASE1:Hg19::chr10:79759687..79759690,+	p@chr10:79759687..79759690, +
5.42e-195	FFCP PHASE2:Hg19::chr11:3691037..3691040,+	p@chr11:3691037..3691040, +
5.42e-195	FFCP PHASE1:Hg19::chr7:128483294..128483304,+	p@chr7:128483294..128483304, +
5.42e-195	FFCP PHASE1:Hg19::chr4:85166508..85166512,+	p@chr4:85166508..85166512, +
5.42e-195	FFCP PHASE2:Hg19::chr4:186423235..186423240,-	p@chr4:186423235..186423240, -
5.42e-195	FFCP PHASE2:Hg19::chr10:79759687..79759690,+	p@chr10:79759687..79759690, +
5.42e-195	FFCP PHASE1:Hg19::chr2:76859417..76859418,+	p@chr2:76859417..76859418, +
5.42e-195	FFCP PHASE1:Hg19::chr10:97176812..97176813,+	p@chr10:97176812..97176813, +
5.42e-195	FFCP PHASE1:Hg19::chr11:3691037..3691040,+	p@chr11:3691037..3691040, +
5.42e-195	FFCP PHASE2:Hg19::chr22:25535147..25535150,+	p@chr22:25535147..25535150, +
9.37e-99	FFCP PHASE2:Hg19::chr5:175125123..175125125,+	p@chr5:175125123..175125125, +
9.37e-99	FFCP PHASE1:Hg19::chr2:152534468..152534476,-	p@chr2:152534468..152534476, -
9.37e-99	FFCP PHASE2:Hg19::chr2:152534468..152534476,-	p@chr2:152534468..152534476, -
9.37e-99	FFCP PHASE2:Hg19::chr1:119487319..119487331,-	p@chr1:119487319..119487331, -
9.37e-99	FFCP PHASE2:Hg19::chr2:168106638..168106641,+	p93@XIRP2
9.37e-99	FFCP PHASE2:Hg19::chr5:172318159..172318160,+	p@chr5:172318159..172318160, +
9.37e-99	FFCP PHASE1:Hg19::chr3:188070178..188070183,+	p@chr3:188070178..188070183, +
9.37e-99	FFCP PHASE1:Hg19::chr13:114067922..114067931,-	p@chr13:114067922..114067931, -
9.37e-99	FFCP PHASE2:Hg19::chr13:51335579..51335582,+	p@chr13:51335579..51335582, +
9.37e-99	FFCP PHASE1:Hg19::chr1:119487319..119487331,-	p@chr1:119487319..119487331, -
9.37e-99	FFCP PHASE2:Hg19::chr15:51060095..51060101,+	p@chr15:51060095..51060101, +
9.37e-99	FFCP PHASE1:Hg19::chr5:117747577..117747580,+	p@chr5:117747577..117747580, +
9.37e-99	FFCP PHASE1:Hg19::chr2:168106638..168106641,+	p93@XIRP2
9.37e-99	FFCP PHASE2:Hg19::chr2:64069328..64069334,-	p7@FLJ36848
9.37e-99	FFCP PHASE2:Hg19::chr6:33716557..33716600,-	p@chr6:33716557..33716600, -
9.37e-99	FFCP PHASE2:Hg19::chr2:168102721..168102729,+	p77@XIRP2
9.37e-99	FFCP PHASE2:Hg19::chr2:168105362..168105368,+	p46@XIRP2
9.37e-99	FFCP PHASE2:Hg19::chr2:179399371..179399376,-	p@chr2:179399371..179399376, -
9.37e-99	FFCP PHASE1:Hg19::chr22:36000901..36000903,-	p@chr22:36000901..36000903, -
9.37e-99	FFCP PHASE1:Hg19::chr5:175125123..175125125,+	p@chr5:175125123..175125125, +
9.37e-99	FFCP PHASE1:Hg19::chr2:168102721..168102729,+	p77@XIRP2
9.37e-99	FFCP PHASE1:Hg19::chr8:144542829..144542857,-	p@chr8:144542829..144542857, -
9.37e-99	FFCP PHASE1:Hg19::chr2:168105362..168105368,+	p46@XIRP2
9.37e-99	FFCP PHASE2:Hg19::chr22:36000901..36000903,-	p@chr22:36000901..36000903, -
9.37e-99	FFCP PHASE2:Hg19::chr7:66800928..66800936,+	p1@ENST00000430244, p1@uc003tvu.2
9.37e-99	FFCP PHASE1:Hg19::chr2:179399371..179399376,-	p@chr2:179399371..179399376, -
9.37e-99	FFCP PHASE1:Hg19::chr5:172318159..172318160,+	p@chr5:172318159..172318160, +
9.37e-99	FFCP PHASE2:Hg19::chr2:168105987..168105994,+	p54@XIRP2
9.37e-99	FFCP PHASE1:Hg19::chr15:51060095..51060101,+	p@chr15:51060095..51060101, +
9.37e-99	FFCP PHASE1:Hg19::chr2:152525581..152525588,-	p@chr2:152525581..152525588, -
9.37e-99	FFCP PHASE2:Hg19::chr5:137206180..137206187,+	p@chr5:137206180..137206187, +
9.37e-99	FFCP PHASE2:Hg19::chr1:145478051..145478060,-	p@chr1:145478051..145478060, -
9.37e-99	FFCP PHASE2:Hg19::chr2:152525581..152525588,-	p@chr2:152525581..152525588, -
9.37e-99	FFCP PHASE2:Hg19::chr2:168104676..168104679,+	p104@XIRP2
9.37e-99	FFCP PHASE1:Hg19::chr2:168105987..168105994,+	p54@XIRP2
9.37e-99	FFCP PHASE1:Hg19::chr1:145478051..145478060,-	p@chr1:145478051..145478060, -
9.37e-99	FFCP PHASE2:Hg19::chr2:152499727..152499734,-	p@chr2:152499727..152499734, -
9.37e-99	FFCP PHASE1:Hg19::chr13:51335579..51335582,+	p@chr13:51335579..51335582, +
9.37e-99	FFCP PHASE2:Hg19::chr2:168104926..168104927,+	p108@XIRP2
9.37e-99	FFCP PHASE1:Hg19::chr2:168104676..168104679,+	p104@XIRP2
9.37e-99	FFCP PHASE1:Hg19::chr2:179514306..179514308,-	p@chr2:179514306..179514308, -
9.37e-99	FFCP PHASE2:Hg19::chr2:152520248..152520253,-	p@chr2:152520248..152520253, -
9.37e-99	FFCP PHASE1:Hg19::chr6:33716557..33716600,-	p@chr6:33716557..33716600, -
9.37e-99	FFCP PHASE1:Hg19::chr2:152553958..152553964,-	p@chr2:152553958..152553964, -
9.37e-99	FFCP PHASE1:Hg19::chr2:152499727..152499734,-	p@chr2:152499727..152499734, -
9.37e-99	FFCP PHASE2:Hg19::chr2:179514306..179514308,-	p@chr2:179514306..179514308, -
9.37e-99	FFCP PHASE2:Hg19::chr3:188070178..188070183,+	p@chr3:188070178..188070183, +
9.37e-99	FFCP PHASE1:Hg19::chr2:64069328..64069334,-	p7@FLJ36848
9.37e-99	FFCP PHASE1:Hg19::chr2:168104926..168104927,+	p108@XIRP2
9.37e-99	FFCP PHASE2:Hg19::chr13:114067922..114067931,-	p@chr13:114067922..114067931, -
9.37e-99	FFCP PHASE1:Hg19::chr7:66800928..66800936,+	p1@ENST00000430244, p1@uc003tvu.2
9.37e-99	FFCP PHASE2:Hg19::chr2:152553958..152553964,-	p@chr2:152553958..152553964, -
9.37e-99	FFCP PHASE1:Hg19::chr2:152520248..152520253,-	p@chr2:152520248..152520253, -
9.37e-99	FFCP PHASE2:Hg19::chr5:117747577..117747580,+	p@chr5:117747577..117747580, +
9.37e-99	FFCP PHASE2:Hg19::chr8:144542829..144542857,-	p@chr8:144542829..144542857, -
9.37e-99	FFCP PHASE1:Hg19::chr5:137206180..137206187,+	p@chr5:137206180..137206187, +
2.55e-98	FFCP PHASE1:Hg19::chr2:152566311..152566321,-	p@chr2:152566311..152566321, -
2.55e-98	FFCP PHASE2:Hg19::chr2:168102459..168102468,+	p73@XIRP2
2.55e-98	FFCP PHASE2:Hg19::chr22:26299595..26299605,+	p@chr22:26299595..26299605, +
2.55e-98	FFCP PHASE2:Hg19::chr2:152566311..152566321,-	p@chr2:152566311..152566321, -
2.55e-98	FFCP PHASE2:Hg19::chr2:179656442..179656451,-	p@chr2:179656442..179656451, -
2.55e-98	FFCP PHASE2:Hg19::chr3:69168368..69168389,-	p@chr3:69168368..69168389, -
2.55e-98	FFCP PHASE1:Hg19::chr2:168102459..168102468,+	p73@XIRP2
2.55e-98	FFCP PHASE1:Hg19::chr22:26299595..26299605,+	p@chr22:26299595..26299605, +
2.55e-98	FFCP PHASE1:Hg19::chr5:95180155..95180172,+	p@chr5:95180155..95180172, +
2.55e-98	FFCP PHASE2:Hg19::chr21:47769234..47769239,+	p@chr21:47769234..47769239, +
2.55e-98	FFCP PHASE2:Hg19::chr3:35732964..35732965,+	p@chr3:35732964..35732965, +
2.55e-98	FFCP PHASE2:Hg19::chr2:29398214..29398229,+	p27@CLIP4
2.55e-98	FFCP PHASE2:Hg19::chr2:152590465..152590472,-	p@chr2:152590465..152590472, -
2.55e-98	FFCP PHASE1:Hg19::chr21:47769234..47769239,+	p@chr21:47769234..47769239, +
2.55e-98	FFCP PHASE1:Hg19::chr2:152590465..152590472,-	p@chr2:152590465..152590472, -
2.55e-98	FFCP PHASE2:Hg19::chr3:46924232..46924241,+	p@chr3:46924232..46924241, +
2.55e-98	FFCP PHASE1:Hg19::chr10:97037060..97037066,-	p@chr10:97037060..97037066, -
2.55e-98	FFCP PHASE2:Hg19::chr6:125535391..125535409,+	p@chr6:125535391..125535409, +
2.55e-98	FFCP PHASE1:Hg19::chr3:69168368..69168389,-	p@chr3:69168368..69168389, -
2.55e-98	FFCP PHASE1:Hg19::chr2:179656442..179656451,-	p@chr2:179656442..179656451, -
2.55e-98	FFCP PHASE2:Hg19::chr12:69653866..69653876,+	p@chr12:69653866..69653876, +
2.55e-98	FFCP PHASE1:Hg19::chr12:122884464..122884467,-	p38@CLIP1
2.55e-98	FFCP PHASE1:Hg19::chr10:29918007..29918031,-	p@chr10:29918007..29918031, -
2.55e-98	FFCP PHASE2:Hg19::chr10:29918007..29918031,-	p@chr10:29918007..29918031, -
2.55e-98	FFCP PHASE2:Hg19::chr5:95180155..95180172,+	p@chr5:95180155..95180172, +
2.55e-98	FFCP PHASE1:Hg19::chr3:35732964..35732965,+	p@chr3:35732964..35732965, +

Showing 1 to 100 of 100 entries

@@ Line 1: / Line 1: @@
 {{UBERON
-|id=UBERON:0002471
+|alt_id=UBERON:MA_0002716-MIAA_0000092
-|name=zeugopod
-|namespace=
-|def="The middle part of the limb (e.g. between the elbow and wrist)" []
-|xref=EFO:0000878;;FMA:83016;;MA:0002716;;MAT:0000092;;MIAA:0000092
-|is_a=UBERON:0002529
-|synonym="epipodium" EXACT [MA:th];;"middle free limb segment" EXACT [FMA:83016];;"middle limb segment" EXACT [];;"middle part of limb" BROAD [];;"zeugopod limb segment" EXACT [MA:th];;"zeugopodial limb segment" EXACT [MA:th];;"zeugopodium" EXACT []
 |comment=Naming conventions for pod terms under discussion within phenoscape group
-|alt_id=UBERON:MA_0002716-MIAA_0000092
-|disjoint_from=
-|union_of=
 |created_by=
-|obo_creation_date=
+|def="The middle part of the limb (e.g. between the elbow and wrist)" []
-|subset=uberon_slim
 |derives_from=
 |develops_from=
+|disjoint_from=
 |has_quality=
+|id=UBERON:0002471
+|is_a=UBERON:0002529
+|is_obsolete=
 |located_in=
+|name=zeugopod
+|namespace=
+|obo_creation_date=
 |part_of=
+|preceded_by=
 |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
-|is_obsolete=
+|subset=uberon_slim
-|preceded_by=
+|synonym="epipodium" EXACT [MA:th];;"middle free limb segment" EXACT [FMA:83016];;"middle limb segment" EXACT [];;"middle part of limb" BROAD [];;"zeugopod limb segment" EXACT [MA:th];;"zeugopodial limb segment" EXACT [MA:th];;"zeugopodium" EXACT []
+|union_of=
+|xref=EFO:0000878;;FMA:83016;;MA:0002716;;MAT:0000092;;MIAA:0000092
 }}

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UBERON:0002471: Difference between revisions

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Revision as of 11:17, 12 September 2014

Ontology Tree: Loaded from BioPortal

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