Personal tools

UBERON:0003135: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 18: Line 18:
|has_quality=
|has_quality=
|located_in=
|located_in=
|part_of=
|part_of=UBERON:0000079;;UBERON:0003101
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|is_obsolete=
|preceded_by=
|preceded_by=
}}
}}

Revision as of 13:33, 27 June 2012

Name:male reproductive organ
Definition:"A male organ involved in reproduction" [UBERON:xp]
Xrefs:
links:

EMAPA:17968

MA:0000545
Synonyms: "male organism reproductive organ" EXACT [OBOL:automatic]
"male organism reproductive structure" EXACT [OBOL:automatic]
"male organism reproductive system organ" EXACT [OBOL:automatic]
"male organism sex organ" EXACT [OBOL:automatic]
"male reproductive system organ" EXACT []
"male sex organ" EXACT []
"reproductive organ of male organism" EXACT [OBOL:automatic]
"reproductive structure of male organism" EXACT [OBOL:automatic]
"reproductive system organ of male organism" EXACT [OBOL:automatic]
"sex organ of male organism" EXACT [OBOL:automatic]
Subset: organ_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0003133(reproductive organ)
part_of:UBERON:0000079(male reproductive system),UBERON:0003101(male organism)



Children

is a:UBERON:0000473 (testis),UBERON:0004054 (internal male genitalia),UBERON:0008811 (intromittent organ)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003135 (male reproductive organ), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.22e-107FFCP PHASE1:Hg19::chr1:44584485..44584512,+#_66f19b0425ada2c62704c537575a11aap2@KLF17
5.22e-107FFCP PHASE2:Hg19::chr1:44584485..44584512,+#_66f19b0425ada2c62704c537575a11aap2@KLF17
1.93e-89FFCP PHASE2:Hg19::chr1:44584530..44584537,+#_14bd9eacf9e9ea78013a0c4df310be11p6@KLF17
1.93e-89FFCP PHASE1:Hg19::chr11:125658009..125658027,+#_14bd9eacf9e9ea78013a0c4df310be11p1@PATE3
1.93e-89FFCP PHASE1:Hg19::chr5:140053152..140053174,-#_14bd9eacf9e9ea78013a0c4df310be11p1@DND1
1.93e-89FFCP PHASE2:Hg19::chr8:24298531..24298551,+#_14bd9eacf9e9ea78013a0c4df310be11p1@ADAM7
1.93e-89FFCP PHASE2:Hg19::chr5:140053152..140053174,-#_14bd9eacf9e9ea78013a0c4df310be11p1@DND1
1.93e-89FFCP PHASE2:Hg19::chr11:125658009..125658027,+#_14bd9eacf9e9ea78013a0c4df310be11p1@PATE3
1.93e-89FFCP PHASE1:Hg19::chr1:44584530..44584537,+#_14bd9eacf9e9ea78013a0c4df310be11p6@KLF17
1.93e-89FFCP PHASE1:Hg19::chr8:24298531..24298551,+#_14bd9eacf9e9ea78013a0c4df310be11p1@ADAM7
1.64e-80FFCP PHASE2:Hg19::chr19:22469215..22469229,+#_2612229f4c14c63ca3ce63bd813f1bf9p2@ZNF729
1.64e-80FFCP PHASE1:Hg19::chr19:22469215..22469229,+#_2612229f4c14c63ca3ce63bd813f1bf9p2@ZNF729
1.88e-80FFCP PHASE1:Hg19::chr12:102133233..102133245,-#_04c8dac822046987a254bcc5e9a57232p1@SYCP3
1.88e-80FFCP PHASE2:Hg19::chr12:102133233..102133245,-#_04c8dac822046987a254bcc5e9a57232p1@SYCP3
8.79e-75FFCP PHASE1:Hg19::chr1:44584544..44584557,+#_140bc6cf5cd7a805dd14eca6f7ac88f4p4@KLF17
8.79e-75FFCP PHASE2:Hg19::chr10:118083953..118083965,+#_140bc6cf5cd7a805dd14eca6f7ac88f4p1@C10orf96
8.79e-75FFCP PHASE1:Hg19::chr10:118083953..118083965,+#_140bc6cf5cd7a805dd14eca6f7ac88f4p1@C10orf96
8.79e-75FFCP PHASE2:Hg19::chr1:44584544..44584557,+#_140bc6cf5cd7a805dd14eca6f7ac88f4p4@KLF17
1.39e-74FFCP PHASE2:Hg19::chr9:135232083..135232140,-#_de916d6cba09abce7456989327a2470fp@chr9:135232083..135232140, -
1.39e-74FFCP PHASE1:Hg19::chr9:135232083..135232140,-#_de916d6cba09abce7456989327a2470fp@chr9:135232083..135232140, -
6.65e-72FFCP PHASE1:Hg19::chr6:35748783..35748831,+#_3ab5fce7d24aafac78c3554849ea8be9p1@C6orf127
6.65e-72FFCP PHASE2:Hg19::chr11:107782394..107782402,+#_3ab5fce7d24aafac78c3554849ea8be9p@chr11:107782394..107782402, +
6.65e-72FFCP PHASE2:Hg19::chr1:38709054..38709062,+#_3ab5fce7d24aafac78c3554849ea8be9p@chr1:38709054..38709062, +
6.65e-72FFCP PHASE1:Hg19::chr8:133637642..133637653,-#_3ab5fce7d24aafac78c3554849ea8be9p6@LRRC6
6.65e-72FFCP PHASE2:Hg19::chr1:24239991..24240012,-#_3ab5fce7d24aafac78c3554849ea8be9p6@CNR2
6.65e-72FFCP PHASE2:Hg19::chr14:21236500..21236512,+#_3ab5fce7d24aafac78c3554849ea8be9p3@EDDM3B
6.65e-72FFCP PHASE1:Hg19::chr12:32717031..32717041,+#_3ab5fce7d24aafac78c3554849ea8be9p@chr12:32717031..32717041, +
6.65e-72FFCP PHASE1:Hg19::chrX:15887107..15887122,-#_3ab5fce7d24aafac78c3554849ea8be9p@chrX:15887107..15887122, -
6.65e-72FFCP PHASE1:Hg19::chr2:233989556..233989568,+#_3ab5fce7d24aafac78c3554849ea8be9p@chr2:233989556..233989568, +
6.65e-72FFCP PHASE1:Hg19::chr1:44584568..44584585,+#_3ab5fce7d24aafac78c3554849ea8be9p3@KLF17
6.65e-72FFCP PHASE1:Hg19::chr19:40431300..40431312,-#_3ab5fce7d24aafac78c3554849ea8be9p@chr19:40431300..40431312, -
6.65e-72FFCP PHASE1:Hg19::chr1:38709054..38709062,+#_3ab5fce7d24aafac78c3554849ea8be9p@chr1:38709054..38709062, +
6.65e-72FFCP PHASE2:Hg19::chr19:51883856..51883866,-#_3ab5fce7d24aafac78c3554849ea8be9p@chr19:51883856..51883866, -
6.65e-72FFCP PHASE2:Hg19::chr1:92406327..92406341,+#_3ab5fce7d24aafac78c3554849ea8be9p@chr1:92406327..92406341, +
6.65e-72FFCP PHASE1:Hg19::chr12:8045030..8045044,+#_3ab5fce7d24aafac78c3554849ea8be9p5@NANOGP1
6.65e-72FFCP PHASE1:Hg19::chr2:71755221..71755234,+#_3ab5fce7d24aafac78c3554849ea8be9p@chr2:71755221..71755234, +
6.65e-72FFCP PHASE2:Hg19::chr2:233989556..233989568,+#_3ab5fce7d24aafac78c3554849ea8be9p@chr2:233989556..233989568, +
6.65e-72FFCP PHASE2:Hg19::chr12:32717043..32717051,+#_3ab5fce7d24aafac78c3554849ea8be9p@chr12:32717043..32717051, +
6.65e-72FFCP PHASE2:Hg19::chr20:44330670..44330703,+#_3ab5fce7d24aafac78c3554849ea8be9p1@WFDC13
6.65e-72FFCP PHASE1:Hg19::chr19:51883879..51883908,-#_3ab5fce7d24aafac78c3554849ea8be9p@chr19:51883879..51883908, -
6.65e-72FFCP PHASE1:Hg19::chr11:107782394..107782402,+#_3ab5fce7d24aafac78c3554849ea8be9p@chr11:107782394..107782402, +
6.65e-72FFCP PHASE1:Hg19::chr1:227034858..227034868,+#_3ab5fce7d24aafac78c3554849ea8be9p@chr1:227034858..227034868, +
6.65e-72FFCP PHASE2:Hg19::chr12:32717031..32717041,+#_3ab5fce7d24aafac78c3554849ea8be9p@chr12:32717031..32717041, +
6.65e-72FFCP PHASE2:Hg19::chr21:27478988..27478996,-#_3ab5fce7d24aafac78c3554849ea8be9p@chr21:27478988..27478996, -
6.65e-72FFCP PHASE2:Hg19::chr2:71755221..71755234,+#_3ab5fce7d24aafac78c3554849ea8be9p@chr2:71755221..71755234, +
6.65e-72FFCP PHASE1:Hg19::chr4:779349..779383,+#_3ab5fce7d24aafac78c3554849ea8be9p@chr4:779349..779383, +
6.65e-72FFCP PHASE2:Hg19::chr1:227034858..227034868,+#_3ab5fce7d24aafac78c3554849ea8be9p@chr1:227034858..227034868, +
6.65e-72FFCP PHASE2:Hg19::chr2:71755236..71755242,+#_3ab5fce7d24aafac78c3554849ea8be9p@chr2:71755236..71755242, +
6.65e-72FFCP PHASE2:Hg19::chr19:51883879..51883908,-#_3ab5fce7d24aafac78c3554849ea8be9p@chr19:51883879..51883908, -
6.65e-72FFCP PHASE2:Hg19::chr12:8045030..8045044,+#_3ab5fce7d24aafac78c3554849ea8be9p5@NANOGP1
6.65e-72FFCP PHASE2:Hg19::chr16:24506473..24506474,-#_3ab5fce7d24aafac78c3554849ea8be9p2@BX538205
6.65e-72FFCP PHASE2:Hg19::chr21:27478934..27478945,-#_3ab5fce7d24aafac78c3554849ea8be9p@chr21:27478934..27478945, -
6.65e-72FFCP PHASE1:Hg19::chr21:27478934..27478945,-#_3ab5fce7d24aafac78c3554849ea8be9p@chr21:27478934..27478945, -
6.65e-72FFCP PHASE2:Hg19::chr1:44584568..44584585,+#_3ab5fce7d24aafac78c3554849ea8be9p3@KLF17
6.65e-72FFCP PHASE2:Hg19::chr2:65786044..65786055,+#_3ab5fce7d24aafac78c3554849ea8be9p@chr2:65786044..65786055, +
6.65e-72FFCP PHASE1:Hg19::chr19:51883915..51883934,-#_3ab5fce7d24aafac78c3554849ea8be9p@chr19:51883915..51883934, -
6.65e-72FFCP PHASE1:Hg19::chr1:92406327..92406341,+#_3ab5fce7d24aafac78c3554849ea8be9p@chr1:92406327..92406341, +
6.65e-72FFCP PHASE2:Hg19::chr6:6032547..6032560,-#_3ab5fce7d24aafac78c3554849ea8be9p@chr6:6032547..6032560, -
6.65e-72FFCP PHASE2:Hg19::chr19:40431300..40431312,-#_3ab5fce7d24aafac78c3554849ea8be9p@chr19:40431300..40431312, -
6.65e-72FFCP PHASE2:Hg19::chr4:779349..779383,+#_3ab5fce7d24aafac78c3554849ea8be9p@chr4:779349..779383, +
6.65e-72FFCP PHASE1:Hg19::chr20:44330670..44330703,+#_3ab5fce7d24aafac78c3554849ea8be9p1@WFDC13
6.65e-72FFCP PHASE1:Hg19::chr15:33905298..33905312,+#_3ab5fce7d24aafac78c3554849ea8be9p@chr15:33905298..33905312, +
6.65e-72FFCP PHASE2:Hg19::chr2:71755206..71755213,+#_3ab5fce7d24aafac78c3554849ea8be9p@chr2:71755206..71755213, +
6.65e-72FFCP PHASE1:Hg19::chr19:51883856..51883866,-#_3ab5fce7d24aafac78c3554849ea8be9p@chr19:51883856..51883866, -
6.65e-72FFCP PHASE2:Hg19::chr6:35748783..35748831,+#_3ab5fce7d24aafac78c3554849ea8be9p1@C6orf127
6.65e-72FFCP PHASE2:Hg19::chrX:15887107..15887122,-#_3ab5fce7d24aafac78c3554849ea8be9p@chrX:15887107..15887122, -
6.65e-72FFCP PHASE1:Hg19::chr2:65786044..65786055,+#_3ab5fce7d24aafac78c3554849ea8be9p@chr2:65786044..65786055, +
6.65e-72FFCP PHASE2:Hg19::chr19:48494541..48494546,-#_3ab5fce7d24aafac78c3554849ea8be9p@chr19:48494541..48494546, -
6.65e-72FFCP PHASE1:Hg19::chr7:2309320..2309348,-#_3ab5fce7d24aafac78c3554849ea8be9p@chr7:2309320..2309348, -
6.65e-72FFCP PHASE2:Hg19::chr14:21214039..21214057,+#_3ab5fce7d24aafac78c3554849ea8be9p1@EDDM3A
6.65e-72FFCP PHASE2:Hg19::chr19:46003056..46003067,+#_3ab5fce7d24aafac78c3554849ea8be9p11@PPM1N
6.65e-72FFCP PHASE1:Hg19::chr19:40431284..40431296,-#_3ab5fce7d24aafac78c3554849ea8be9p@chr19:40431284..40431296, -
6.65e-72FFCP PHASE2:Hg19::chr8:133637624..133637635,-#_3ab5fce7d24aafac78c3554849ea8be9p5@LRRC6
6.65e-72FFCP PHASE1:Hg19::chr14:21236500..21236512,+#_3ab5fce7d24aafac78c3554849ea8be9p3@EDDM3B
6.65e-72FFCP PHASE2:Hg19::chr19:51883915..51883934,-#_3ab5fce7d24aafac78c3554849ea8be9p@chr19:51883915..51883934, -
6.65e-72FFCP PHASE1:Hg19::chr12:32717043..32717051,+#_3ab5fce7d24aafac78c3554849ea8be9p@chr12:32717043..32717051, +
6.65e-72FFCP PHASE1:Hg19::chr19:46003056..46003067,+#_3ab5fce7d24aafac78c3554849ea8be9p11@PPM1N
6.65e-72FFCP PHASE1:Hg19::chr6:6032547..6032560,-#_3ab5fce7d24aafac78c3554849ea8be9p@chr6:6032547..6032560, -
6.65e-72FFCP PHASE1:Hg19::chr2:71755236..71755242,+#_3ab5fce7d24aafac78c3554849ea8be9p@chr2:71755236..71755242, +
6.65e-72FFCP PHASE1:Hg19::chr17:42013628..42013633,+#_3ab5fce7d24aafac78c3554849ea8be9p@chr17:42013628..42013633, +
6.65e-72FFCP PHASE2:Hg19::chr19:40431284..40431296,-#_3ab5fce7d24aafac78c3554849ea8be9p@chr19:40431284..40431296, -
6.65e-72FFCP PHASE1:Hg19::chr21:27478988..27478996,-#_3ab5fce7d24aafac78c3554849ea8be9p@chr21:27478988..27478996, -
6.65e-72FFCP PHASE1:Hg19::chr19:48494541..48494546,-#_3ab5fce7d24aafac78c3554849ea8be9p@chr19:48494541..48494546, -
6.65e-72FFCP PHASE1:Hg19::chr8:133637624..133637635,-#_3ab5fce7d24aafac78c3554849ea8be9p5@LRRC6
6.65e-72FFCP PHASE1:Hg19::chr14:21214039..21214057,+#_3ab5fce7d24aafac78c3554849ea8be9p1@EDDM3A
6.65e-72FFCP PHASE2:Hg19::chr7:2309320..2309348,-#_3ab5fce7d24aafac78c3554849ea8be9p@chr7:2309320..2309348, -
6.65e-72FFCP PHASE1:Hg19::chr16:24506473..24506474,-#_3ab5fce7d24aafac78c3554849ea8be9p2@BX538205
6.65e-72FFCP PHASE2:Hg19::chr15:33905298..33905312,+#_3ab5fce7d24aafac78c3554849ea8be9p@chr15:33905298..33905312, +
6.65e-72FFCP PHASE2:Hg19::chr17:42013628..42013633,+#_3ab5fce7d24aafac78c3554849ea8be9p@chr17:42013628..42013633, +
6.65e-72FFCP PHASE1:Hg19::chr16:9069001..9069012,-#_3ab5fce7d24aafac78c3554849ea8be9p@chr16:9069001..9069012, -
6.65e-72FFCP PHASE2:Hg19::chr8:133637642..133637653,-#_3ab5fce7d24aafac78c3554849ea8be9p6@LRRC6
6.65e-72FFCP PHASE1:Hg19::chr1:24239991..24240012,-#_3ab5fce7d24aafac78c3554849ea8be9p6@CNR2
6.65e-72FFCP PHASE1:Hg19::chr2:71755206..71755213,+#_3ab5fce7d24aafac78c3554849ea8be9p@chr2:71755206..71755213, +
6.65e-72FFCP PHASE2:Hg19::chr16:9069001..9069012,-#_3ab5fce7d24aafac78c3554849ea8be9p@chr16:9069001..9069012, -
2.21e-71FFCP PHASE2:Hg19::chr17:12125154..12125159,+#_2158c989b50cb0ff9bd531ba9164ef01p@chr17:12125154..12125159, +
2.21e-71FFCP PHASE1:Hg19::chr17:12125154..12125159,+#_2158c989b50cb0ff9bd531ba9164ef01p@chr17:12125154..12125159, +
2.63e-64FFCP PHASE2:Hg19::chr6:49834166..49834204,-#_8ad4b245834e2f24231cf8aa110770fdp1@CRISP1
2.63e-64FFCP PHASE2:Hg19::chr12:10183271..10183289,+#_8ad4b245834e2f24231cf8aa110770fdp1@CLEC9A
2.63e-64FFCP PHASE1:Hg19::chr6:49834166..49834204,-#_8ad4b245834e2f24231cf8aa110770fdp1@CRISP1
2.63e-64FFCP PHASE1:Hg19::chr12:10183271..10183289,+#_8ad4b245834e2f24231cf8aa110770fdp1@CLEC9A

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0003135&oldid=1837681"