Personal tools

UBERON:0010708: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
(Created page with "{{UBERON |id=UBERON:0010708 |name=pectoral complex |namespace= |def="Appendage girdle complex that when present, encompasses the pectoral appendicular skeleton and the pec...")
 
No edit summary
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0010708
|alt_id=
|name=pectoral complex
|namespace=
|def="Appendage girdle complex that when present, encompasses the pectoral appendicular skeleton and the pectoral girdle." [VSAO:0000213]
|xref=FMA:7183;;VSAO:0000213
|is_a=UBERON:0010707
|synonym="pectoral girdle plus anterior limb or fin" EXACT [UBERON:cjm];;"pectoral girdle plus pectoral limb or fin" EXACT [UBERON:cjm];;"upper limb" RELATED INCONSISTENT [FMA:7183]
|comment=AO notes: note that the FMA uses the terms 'upper limb' and 'lower limb' to refer to the entire appendage complex (free limb plus girdle region)
|comment=AO notes: note that the FMA uses the terms 'upper limb' and 'lower limb' to refer to the entire appendage complex (free limb plus girdle region)
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Appendage girdle complex that when present, encompasses the pectoral appendicular skeleton and the pectoral girdle." [VSAO:0000213]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0010708
|is_a=UBERON:0010707
|is_obsolete=
|located_in=
|located_in=
|name=pectoral complex
|namespace=
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="pectoral girdle plus anterior limb or fin" EXACT [UBERON:cjm];;"pectoral girdle plus pectoral limb or fin" EXACT [UBERON:cjm];;"upper limb" RELATED INCONSISTENT [FMA:7183]
|union_of=
|xref=FMA:7183;;VSAO:0000213
}}
}}

Revision as of 11:51, 12 September 2014

Name:pectoral complex
Definition:"Appendage girdle complex that when present, encompasses the pectoral appendicular skeleton and the pectoral girdle." [VSAO:0000213]
Xrefs:
links:

FMA:7183

VSAO:0000213
Synonyms: "pectoral girdle plus anterior limb or fin" EXACT [UBERON:cjm]
"pectoral girdle plus pectoral limb or fin" EXACT [UBERON:cjm]
"upper limb" RELATED INCONSISTENT [FMA:7183]
Comments:AO notes: note that the FMA uses the terms 'upper limb' and 'lower limb' to refer to the entire appendage complex (free limb plus girdle region)

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0010707(appendage girdle complex)



Children

part of:UBERON:0001467 (shoulder),UBERON:0002102 (forelimb),UBERON:0004710 (pectoral appendage)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0010708 (pectoral complex), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
7.4e-76FFCP PHASE2:Mm9::chr2:74499300..74499309,-#_cd31931a0915ba08cb345e7f80a0ce6ap5@Evx2
7.4e-76FFCP PHASE1:Mm9::chr2:74499300..74499309,-#_cd31931a0915ba08cb345e7f80a0ce6ap5@Evx2
3.71e-65FFCP PHASE2:Mm9::chr15:51484092..51484121,-#_ae0f5faea4b5ac1d66a74038317be8bcp@chr15:51484092..51484121, -
3.71e-65FFCP PHASE1:Mm9::chr2:165983686..165983720,-#_ae0f5faea4b5ac1d66a74038317be8bcp@chr2:165983686..165983720, -
3.71e-65FFCP PHASE2:Mm9::chr5:120256413..120256428,-#_ae0f5faea4b5ac1d66a74038317be8bcp@chr5:120256413..120256428, -
3.71e-65FFCP PHASE2:Mm9::chr2:165983686..165983720,-#_ae0f5faea4b5ac1d66a74038317be8bcp@chr2:165983686..165983720, -
3.71e-65FFCP PHASE1:Mm9::chr5:120256413..120256428,-#_ae0f5faea4b5ac1d66a74038317be8bcp@chr5:120256413..120256428, -
3.71e-65FFCP PHASE1:Mm9::chr15:51484092..51484121,-#_ae0f5faea4b5ac1d66a74038317be8bcp@chr15:51484092..51484121, -
6.0e-54FFCP PHASE1:Mm9::chr2:74505324..74505330,+#_e94231df1e5e8eac2999d14b979f2da1p@chr2:74505324..74505330, +
6.0e-54FFCP PHASE2:Mm9::chr2:74505324..74505330,+#_e94231df1e5e8eac2999d14b979f2da1p@chr2:74505324..74505330, +
1.03e-53FFCP PHASE1:Mm9::chr2:74506264..74506286,+#_d088d67746ef1108c2f4c46a60147ffcp1@Hoxd13
1.03e-53FFCP PHASE2:Mm9::chr2:74506264..74506286,+#_d088d67746ef1108c2f4c46a60147ffcp1@Hoxd13
9.59e-46FFCP PHASE1:Mm9::chr2:74513064..74513089,+#_6375ed29c996f964c15fc55be0bc55f4p2@Hoxd12
9.59e-46FFCP PHASE2:Mm9::chr2:74513064..74513089,+#_6375ed29c996f964c15fc55be0bc55f4p2@Hoxd12
1.19e-45FFCP PHASE2:Mm9::chr2:74499251..74499258,-#_d51c3c10c158aabfb91270874622613ap4@Evx2
1.19e-45FFCP PHASE1:Mm9::chr2:74499251..74499258,-#_d51c3c10c158aabfb91270874622613ap4@Evx2
1.46e-45FFCP PHASE2:Mm9::chr2:33574246..33574257,-#_ced3f231d071d6d3636ab5676c7ea61ep3@ENSMUST00000130532
1.46e-45FFCP PHASE1:Mm9::chr2:33574246..33574257,-#_ced3f231d071d6d3636ab5676c7ea61ep3@ENSMUST00000130532
6.68e-44FFCP PHASE1:Mm9::chr2:74521516..74521525,+#_b99f52eca1b0c38e58c6a6b85f4eccb2p1@ENSMUST00000136302
6.68e-44FFCP PHASE2:Mm9::chr2:74521516..74521525,+#_b99f52eca1b0c38e58c6a6b85f4eccb2p1@ENSMUST00000136302
1.41e-43FFCP PHASE2:Mm9::chr6:51009701..51009744,-#_7e01f3fb1d0ae08083bbc6a675d03e32p@chr6:51009701..51009744, -
1.41e-43FFCP PHASE1:Mm9::chr6:51009701..51009744,-#_7e01f3fb1d0ae08083bbc6a675d03e32p@chr6:51009701..51009744, -
3.38e-42FFCP PHASE2:Mm9::chr10:97069737..97069749,+#_45b13f3390fb2dd5ea751aedc7ef472dp5@Kera
3.38e-42FFCP PHASE1:Mm9::chr10:97069737..97069749,+#_45b13f3390fb2dd5ea751aedc7ef472dp5@Kera
5.12e-42FFCP PHASE1:Mm9::chr6:52210816..52210831,-#_00a5d7434e7f74388abf4166bafbeceep2@Hoxa13
5.12e-42FFCP PHASE2:Mm9::chr6:52210816..52210831,-#_00a5d7434e7f74388abf4166bafbeceep2@Hoxa13
6.76e-42FFCP PHASE1:Mm9::chr2:74513149..74513159,+#_a3f5acfece1c723cfc4b42e087a0368ap@chr2:74513149..74513159, +
6.76e-42FFCP PHASE2:Mm9::chr2:74513149..74513159,+#_a3f5acfece1c723cfc4b42e087a0368ap@chr2:74513149..74513159, +
4.36e-39FFCP PHASE1:Mm9::chr1:165288513..165288518,+#_5629bea49dc0337e06fafb210b65a11fp@chr1:165288513..165288518, +
4.36e-39FFCP PHASE2:Mm9::chr1:165288513..165288518,+#_5629bea49dc0337e06fafb210b65a11fp@chr1:165288513..165288518, +
3.47e-36FFCP PHASE1:Mm9::chr1:164064835..164064864,-#_c8abdc1329f57083af4f24db9250f57dp3@Dnm3
3.47e-36FFCP PHASE2:Mm9::chr1:164064835..164064864,-#_c8abdc1329f57083af4f24db9250f57dp3@Dnm3
2.38e-35FFCP PHASE2:Mm9::chr2:33574267..33574279,-#_34ced7242a499335d1238ace35b58874p1@ENSMUST00000130532
2.38e-35FFCP PHASE1:Mm9::chr2:33574267..33574279,-#_34ced7242a499335d1238ace35b58874p1@ENSMUST00000130532
2.91e-35FFCP PHASE1:Mm9::chr2:33574309..33574319,-#_f27fabef94c26571d657a317ce1b540ep4@ENSMUST00000130532
2.91e-35FFCP PHASE2:Mm9::chr2:33574309..33574319,-#_f27fabef94c26571d657a317ce1b540ep4@ENSMUST00000130532
4.64e-34FFCP PHASE2:Mm9::chr6:52195000..52195013,+#_d220a6ed62bc42d0afa033b4c2227a22p3@Hoxa11as
4.64e-34FFCP PHASE1:Mm9::chr6:52195000..52195013,+#_d220a6ed62bc42d0afa033b4c2227a22p3@Hoxa11as
2.45e-33FFCP PHASE1:Mm9::chr2:74512009..74512012,+#_1b6f5d811974161740b64a28ed32121dp@chr2:74512009..74512012, +
2.45e-33FFCP PHASE2:Mm9::chr2:74512009..74512012,+#_1b6f5d811974161740b64a28ed32121dp@chr2:74512009..74512012, +
4.67e-31FFCP PHASE1:Mm9::chr2:33496847..33496857,+#_bee8f69b76a7edddb6952cd27814df34p3@ENSMUST00000147294, p3@uc008jia.1
4.67e-31FFCP PHASE2:Mm9::chr2:33496847..33496857,+#_bee8f69b76a7edddb6952cd27814df34p3@ENSMUST00000147294, p3@uc008jia.1
1.91e-30FFCP PHASE1:Mm9::chr13:89680110..89680115,+#_402db87b1684a04712589c9da544be9dp6@Hapln1
1.91e-30FFCP PHASE2:Mm9::chr13:89680110..89680115,+#_402db87b1684a04712589c9da544be9dp6@Hapln1
5.75e-30FFCP PHASE2:Mm9::chr9:96754986..96754989,-#_3cb382833a8dd81b031812294e3fa3b6p3@Acpl2
5.75e-30FFCP PHASE1:Mm9::chr9:96754986..96754989,-#_3cb382833a8dd81b031812294e3fa3b6p3@Acpl2
8.69e-30FFCP PHASE1:Mm9::chr8:23734491..23734495,+#_dfd8f6a1a0273e708d516358d4930b3cp1@Dkk4
8.69e-30FFCP PHASE2:Mm9::chr8:23734491..23734495,+#_dfd8f6a1a0273e708d516358d4930b3cp1@Dkk4
1.03e-29FFCP PHASE1:Mm9::chr2:155770985..155770995,-#_b8ae6c4228686768ed69d930062f9cfcp2@Gdf5
1.03e-29FFCP PHASE2:Mm9::chr2:155770985..155770995,-#_b8ae6c4228686768ed69d930062f9cfcp2@Gdf5
2.39e-29FFCP PHASE1:Mm9::chr18:80910310..80910329,-#_6e0047ee7f7e8b7eb828212f7f0d02a3p@chr18:80910310..80910329, -
2.39e-29FFCP PHASE2:Mm9::chr18:80910310..80910329,-#_6e0047ee7f7e8b7eb828212f7f0d02a3p@chr18:80910310..80910329, -
2.61e-28FFCP PHASE2:Mm9::chr6:52210774..52210787,-#_b52e12fea54ac53daf82998067091d2bp1@Hoxa13
2.61e-28FFCP PHASE1:Mm9::chr6:52210774..52210787,-#_b52e12fea54ac53daf82998067091d2bp1@Hoxa13
5.76e-28FFCP PHASE1:Mm9::chr2:33498116..33498124,+#_389c5906cb9ee4197018f0f1ce703753p@chr2:33498116..33498124, +
5.76e-28FFCP PHASE2:Mm9::chr2:33498116..33498124,+#_389c5906cb9ee4197018f0f1ce703753p@chr2:33498116..33498124, +
6.54e-28FFCP PHASE2:Mm9::chr2:33496574..33496588,+#_3af9a2c82f9d0b5ad3cb6714dd2a5620p4@ENSMUST00000152118, p4@uc008jhz.1
6.54e-28FFCP PHASE1:Mm9::chr2:33496574..33496588,+#_3af9a2c82f9d0b5ad3cb6714dd2a5620p4@ENSMUST00000152118, p4@uc008jhz.1
8.91e-27FFCP PHASE1:Mm9::chr2:74520075..74520087,+#_a1a923b5967ec61f9bb8f0fef14d5ee1p6@Hoxd11
8.91e-27FFCP PHASE2:Mm9::chr2:74520075..74520087,+#_a1a923b5967ec61f9bb8f0fef14d5ee1p6@Hoxd11
1.7e-26FFCP PHASE2:Mm9::chr12:34649201..34649205,+#_ee888290dbe9de45527477da13ee1a38p@chr12:34649201..34649205, +
1.7e-26FFCP PHASE1:Mm9::chr12:34649201..34649205,+#_ee888290dbe9de45527477da13ee1a38p@chr12:34649201..34649205, +
9.51e-26FFCP PHASE2:Mm9::chr5:120285104..120285113,+#_869d73a648c6f5f3ba26a855fd0c5fdep5@Tbx5
9.51e-26FFCP PHASE1:Mm9::chr5:120285104..120285113,+#_869d73a648c6f5f3ba26a855fd0c5fdep5@Tbx5
1.47e-25FFCP PHASE1:Mm9::chr5:120246556..120246565,+#_3d12ec71a41cbf72b34de9131cece568p@chr5:120246556..120246565, +
1.47e-25FFCP PHASE2:Mm9::chr5:120246556..120246565,+#_3d12ec71a41cbf72b34de9131cece568p@chr5:120246556..120246565, +
2.19e-25FFCP PHASE2:Mm9::chr16:77329743..77329754,+#_da78341f794b47ff5c83f0f1213849c7p14@2810055G20Rik
2.19e-25FFCP PHASE1:Mm9::chr16:77329743..77329754,+#_da78341f794b47ff5c83f0f1213849c7p14@2810055G20Rik
2.39e-25FFCP PHASE2:Mm9::chr3:29912310..29912321,-#_a4bb984da50373bbd3515797435c14d0p23@Mecom
2.39e-25FFCP PHASE1:Mm9::chr3:29912310..29912321,-#_a4bb984da50373bbd3515797435c14d0p23@Mecom
2.58e-25FFCP PHASE1:Mm9::chr5:120246522..120246553,+#_398bef40181a0d395fe2849e6eb3a768p@chr5:120246522..120246553, +
2.58e-25FFCP PHASE2:Mm9::chr5:120246522..120246553,+#_398bef40181a0d395fe2849e6eb3a768p@chr5:120246522..120246553, +
2.13e-24FFCP PHASE2:Mm9::chr3:99044251..99044260,+#_799713071b8a0e9dda573beeadadfd68p8@Tbx15
2.13e-24FFCP PHASE1:Mm9::chr3:99044251..99044260,+#_799713071b8a0e9dda573beeadadfd68p8@Tbx15
1.18e-23FFCP PHASE1:Mm9::chr15:97807283..97807309,-#_34396d7b35dbdd9a9dc8092a990a774ap@chr15:97807283..97807309, -
1.18e-23FFCP PHASE2:Mm9::chr15:97807283..97807309,-#_34396d7b35dbdd9a9dc8092a990a774ap@chr15:97807283..97807309, -
1.35e-23FFCP PHASE1:Mm9::chr1:165244244..165244254,-#_ca4c280b373c83a40d781caeb30f5709p8@Prrx1
1.35e-23FFCP PHASE2:Mm9::chr1:165244244..165244254,-#_ca4c280b373c83a40d781caeb30f5709p8@Prrx1
2.8e-23FFCP PHASE2:Mm9::chr5:42155277..42155281,-#_06815d3a2a509447f848be9d674238e5p2@Nkx3-2
2.8e-23FFCP PHASE1:Mm9::chr5:42155277..42155281,-#_06815d3a2a509447f848be9d674238e5p2@Nkx3-2
3.72e-23FFCP PHASE1:Mm9::chr16:95807232..95807250,-#_64ed2bb0f17e15926c5a23514b5f9327p@chr16:95807232..95807250, -
3.72e-23FFCP PHASE2:Mm9::chr16:95807232..95807250,-#_64ed2bb0f17e15926c5a23514b5f9327p@chr16:95807232..95807250, -
8.41e-23FFCP PHASE2:Mm9::chr4:125973415..125973418,+#_474012b704b079ab3605f1e99600231ap@chr4:125973415..125973418, +
8.41e-23FFCP PHASE1:Mm9::chr3:37606335..37606337,-#_474012b704b079ab3605f1e99600231ap@chr3:37606335..37606337, -
8.41e-23FFCP PHASE2:Mm9::chr3:86116124..86116132,+#_474012b704b079ab3605f1e99600231ap@chr3:86116124..86116132, +
8.41e-23FFCP PHASE1:Mm9::chr3:86116124..86116132,+#_474012b704b079ab3605f1e99600231ap@chr3:86116124..86116132, +
8.41e-23FFCP PHASE2:Mm9::chr3:37606335..37606337,-#_474012b704b079ab3605f1e99600231ap@chr3:37606335..37606337, -
8.41e-23FFCP PHASE1:Mm9::chr4:125973415..125973418,+#_474012b704b079ab3605f1e99600231ap@chr4:125973415..125973418, +
1.91e-22FFCP PHASE1:Mm9::chr17:68300324..68300336,-#_080057bc5f28f893db849ac4e140f7ccp5@Arhgap28
1.91e-22FFCP PHASE2:Mm9::chr17:68300324..68300336,-#_080057bc5f28f893db849ac4e140f7ccp5@Arhgap28
3.77e-22FFCP PHASE2:Mm9::chr7:75096968..75096978,+#_c7d3a2e7b658b94f1ef1b28e10ebe89ep9@Igf1r
3.77e-22FFCP PHASE1:Mm9::chr7:75096968..75096978,+#_c7d3a2e7b658b94f1ef1b28e10ebe89ep9@Igf1r
4.7e-22FFCP PHASE1:Mm9::chr15:101936581..101936594,+#_5f907b2be6bd575d131a757fa3ee667ep@chr15:101936581..101936594, +
4.7e-22FFCP PHASE2:Mm9::chr15:101936581..101936594,+#_5f907b2be6bd575d131a757fa3ee667ep@chr15:101936581..101936594, +
5.52e-22FFCP PHASE1:Mm9::chr17:23882313..23882330,-#_fcfe6a95b7fc4f5151c043b2c4e22b97p@chr17:23882313..23882330, -
5.52e-22FFCP PHASE2:Mm9::chr17:23882313..23882330,-#_fcfe6a95b7fc4f5151c043b2c4e22b97p@chr17:23882313..23882330, -
6.36e-22FFCP PHASE2:Mm9::chr2:155771018..155771042,-#_d2ca8ec67715918f31e1bce326ceda76p1@Gdf5
6.36e-22FFCP PHASE1:Mm9::chr2:155771018..155771042,-#_d2ca8ec67715918f31e1bce326ceda76p1@Gdf5
3.33e-21FFCP PHASE1:Mm9::chr15:77137392..77137399,-#_f80ac68d19b950805ab3f66ae280623fp16@Rbfox2
3.33e-21FFCP PHASE2:Mm9::chr15:77137392..77137399,-#_f80ac68d19b950805ab3f66ae280623fp16@Rbfox2

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0010708&oldid=3274712"