Personal tools

CL:0000839: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{CL
{{CL
|id=CL:0000839
|alt_id=
|name=myeloid lineage restricted progenitor cell
|namespace=cell;;efo
|def="A progenitor cell restricted to the myeloid lineage." [GOC:add, GOC:tfm, PMID:19022770]
|xref=BTO:0004730;;FMA:70339
|is_a=CL:0002031
|synonym="myeloid progenitor cell" BROAD []
|comment=Note that this is a class of cell types, not an identified single cell type.
|comment=Note that this is a class of cell types, not an identified single cell type.
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A progenitor cell restricted to the myeloid lineage." [GOC:add, GOC:tfm, PMID:19022770]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0000839
|is_a=CL:0002031
|is_obsolete=
|located_in=
|located_in=
|name=myeloid lineage restricted progenitor cell
|namespace=cell;;efo
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="myeloid progenitor cell" BROAD []
|union_of=
|xref=BTO:0004730;;FMA:70339
}}
}}

Revision as of 10:22, 12 September 2014

Name:myeloid lineage restricted progenitor cell
Namespace:cell;;efo
Definition:"A progenitor cell restricted to the myeloid lineage." [GOC:add, GOC:tfm, PMID:19022770]
Xrefs:
links:

BTO:0004730

FMA:70339
Synonyms: "myeloid progenitor cell" BROAD []
Comments:Note that this is a class of cell types, not an identified single cell type.


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0002031(hematopoietic lineage restricted progenitor cell)



Children


is a:CL:0000038 (erythroid progenitor cell),CL:0000553 (megakaryocyte progenitor cell),CL:0000831 (mast cell progenitor),CL:0002191 (granulocytopoietic cell),CL:0002194 (monopoietic cell)
disjoint from:CL:0000838 (lymphoid lineage restricted progenitor cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000839 (myeloid lineage restricted progenitor cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
7.37e-139FFCP PHASE2:Hg19::chr1:161187824..161187847,+#_5aabf7923e583837cb63e7981ec7f267p@chr1:161187824..161187847, +
7.37e-139FFCP PHASE1:Hg19::chr1:161187824..161187847,+#_5aabf7923e583837cb63e7981ec7f267p@chr1:161187824..161187847, +
1.43e-133FFCP PHASE1:Hg19::chr1:161188661..161188679,+#_79102feaf9ff97fc4816e586a829713ep@chr1:161188661..161188679, +
1.43e-133FFCP PHASE2:Hg19::chr1:161188661..161188679,+#_79102feaf9ff97fc4816e586a829713ep@chr1:161188661..161188679, +
3.74e-131FFCP PHASE1:Hg19::chr7:77050554..77050601,+#_771ba14ea33acf3b6d9234885db9c5f2p@chr7:77050554..77050601, +
3.74e-131FFCP PHASE2:Hg19::chr7:77050554..77050601,+#_771ba14ea33acf3b6d9234885db9c5f2p@chr7:77050554..77050601, +
7.56e-130FFCP PHASE2:Hg19::chr1:161188746..161188758,+#_12dd544b32f0b42d2316ad8b87fac505p@chr1:161188746..161188758, +
7.56e-130FFCP PHASE1:Hg19::chr1:161188746..161188758,+#_12dd544b32f0b42d2316ad8b87fac505p@chr1:161188746..161188758, +
7.5e-129FFCP PHASE1:Hg19::chr17:7482481..7482508,-#_f059289cb1061b358c6c1cb49c289fdbp@chr17:7482481..7482508, -
7.5e-129FFCP PHASE2:Hg19::chr17:7482481..7482508,-#_f059289cb1061b358c6c1cb49c289fdbp@chr17:7482481..7482508, -
1.42e-128FFCP PHASE1:Hg19::chr19:18288651..18288682,+#_20038047ec35d0b54b43f6e99155484ap5@IFI30
1.42e-128FFCP PHASE2:Hg19::chr19:18288651..18288682,+#_20038047ec35d0b54b43f6e99155484ap5@IFI30
1.35e-127FFCP PHASE1:Hg19::chr18:2847062..2847071,+#_e7211977ef5931768cf940b2437f990ap7@EMILIN2
1.35e-127FFCP PHASE2:Hg19::chr18:2847062..2847071,+#_e7211977ef5931768cf940b2437f990ap7@EMILIN2
7.64e-125FFCP PHASE2:Hg19::chr16:50313426..50313459,+#_dcd50a1a4413a216e182e574cde42ecap@chr16:50313426..50313459, +
7.64e-125FFCP PHASE1:Hg19::chr16:50313426..50313459,+#_dcd50a1a4413a216e182e574cde42ecap@chr16:50313426..50313459, +
2.54e-124FFCP PHASE2:Hg19::chr5:180242646..180242657,-#_69b7286204772ec15ffe89931983bd94p15@MGAT1
2.54e-124FFCP PHASE1:Hg19::chr5:180242646..180242657,-#_69b7286204772ec15ffe89931983bd94p15@MGAT1
4.13e-124FFCP PHASE2:Hg19::chr19:18288828..18288861,+#_d86758d15479b1b06476a096973d47cbp7@IFI30
4.13e-124FFCP PHASE1:Hg19::chr19:18288828..18288861,+#_d86758d15479b1b06476a096973d47cbp7@IFI30
1.24e-123FFCP PHASE2:Hg19::chr1:111743000..111743011,+#_dce24a613ab2ffa7e01464172da4ba5fp8@CHI3L2
1.24e-123FFCP PHASE1:Hg19::chr1:111743000..111743011,+#_dce24a613ab2ffa7e01464172da4ba5fp8@CHI3L2
1.56e-120FFCP PHASE1:Hg19::chr2:38358217..38358244,+#_55732762c3a30c769c446656e18f4500p1@CYP1B1-AS1
1.56e-120FFCP PHASE2:Hg19::chr2:38358217..38358244,+#_55732762c3a30c769c446656e18f4500p1@CYP1B1-AS1
1.66e-120FFCP PHASE2:Hg19::chr15:65174546..65174583,-#_cd346cf73de4551a807e20c1d7d2d354p@chr15:65174546..65174583, -
1.66e-120FFCP PHASE1:Hg19::chr15:65174546..65174583,-#_cd346cf73de4551a807e20c1d7d2d354p@chr15:65174546..65174583, -
1.31e-119FFCP PHASE2:Hg19::chr4:185314125..185314143,-#_57b9108246cd79ac1923065b59e76e64p@chr4:185314125..185314143, -
1.31e-119FFCP PHASE1:Hg19::chr4:185314125..185314143,-#_57b9108246cd79ac1923065b59e76e64p@chr4:185314125..185314143, -
5.01e-119FFCP PHASE1:Hg19::chr3:149531627..149531651,+#_b09d923a52bf043399978f2abe21176dp7@RNF13
5.01e-119FFCP PHASE2:Hg19::chr3:149531627..149531651,+#_b09d923a52bf043399978f2abe21176dp7@RNF13
8.73e-119FFCP PHASE2:Hg19::chr1:161188686..161188721,+#_becc2fd351cb4bb202771b330666cae0p@chr1:161188686..161188721, +
8.73e-119FFCP PHASE1:Hg19::chr1:161188686..161188721,+#_becc2fd351cb4bb202771b330666cae0p@chr1:161188686..161188721, +
1.53e-118FFCP PHASE1:Hg19::chr2:119726719..119726744,+#_325e85aee2296721bd2a437077a6553fp@chr2:119726719..119726744, +
1.53e-118FFCP PHASE2:Hg19::chr2:119726719..119726744,+#_325e85aee2296721bd2a437077a6553fp@chr2:119726719..119726744, +
4.06e-118FFCP PHASE2:Hg19::chr17:40168698..40168726,-#_834a4a4bcd3fd38fb63c3a7282f2abeap1@AK126179
4.06e-118FFCP PHASE1:Hg19::chr17:40168698..40168726,-#_834a4a4bcd3fd38fb63c3a7282f2abeap1@AK126179
6.99e-118FFCP PHASE1:Hg19::chr5:131280548..131280574,-#_df9f4ff0435ee43cf7fd6552605165e5p1@ENST00000425320
6.99e-118FFCP PHASE2:Hg19::chr5:131280548..131280574,-#_df9f4ff0435ee43cf7fd6552605165e5p1@ENST00000425320
9.58e-118FFCP PHASE2:Hg19::chr19:18286116..18286156,+#_c755e8de4d2add587e6ebf1d62080969p@chr19:18286116..18286156, +
9.58e-118FFCP PHASE1:Hg19::chr19:18286116..18286156,+#_c755e8de4d2add587e6ebf1d62080969p@chr19:18286116..18286156, +
1.24e-117FFCP PHASE2:Hg19::chr4:185314151..185314178,-#_a650908a55d05f1da42a1d8ae1570ac6p@chr4:185314151..185314178, -
1.24e-117FFCP PHASE1:Hg19::chr4:185314151..185314178,-#_a650908a55d05f1da42a1d8ae1570ac6p@chr4:185314151..185314178, -
1.57e-117FFCP PHASE2:Hg19::chr2:145429606..145429658,+#_b9494679c5c4c5369bab8bfcbc55f853p@chr2:145429606..145429658, +
1.57e-117FFCP PHASE1:Hg19::chr2:145429606..145429658,+#_b9494679c5c4c5369bab8bfcbc55f853p@chr2:145429606..145429658, +
4.69e-117FFCP PHASE1:Hg19::chr19:18288064..18288080,+#_8c34cf1568ae3171fd276e08b353308dp@chr19:18288064..18288080, +
4.69e-117FFCP PHASE2:Hg19::chr19:18288064..18288080,+#_8c34cf1568ae3171fd276e08b353308dp@chr19:18288064..18288080, +
6.33e-117FFCP PHASE1:Hg19::chr17:72542163..72542182,-#_a6eeada5c568be745780f897812bfe5dp2@CD300C
6.33e-117FFCP PHASE2:Hg19::chr17:72542163..72542182,-#_a6eeada5c568be745780f897812bfe5dp2@CD300C
1.94e-116FFCP PHASE2:Hg19::chr1:161188826..161188842,+#_7ae75bece9d54a6e5e44e0c893856c3dp@chr1:161188826..161188842, +
1.94e-116FFCP PHASE1:Hg19::chr1:161188826..161188842,+#_7ae75bece9d54a6e5e44e0c893856c3dp@chr1:161188826..161188842, +
2.02e-116FFCP PHASE1:Hg19::chr4:185314188..185314207,-#_edab46ab24dda7d4606a53986414e6cep@chr4:185314188..185314207, -
2.02e-116FFCP PHASE2:Hg19::chr4:185314188..185314207,-#_edab46ab24dda7d4606a53986414e6cep@chr4:185314188..185314207, -
2.06e-116FFCP PHASE1:Hg19::chrX:37664331..37664352,+#_ce17be7aee1f2f70e29a234c9264b54bp@chrX:37664331..37664352, +
2.06e-116FFCP PHASE2:Hg19::chrX:37664331..37664352,+#_ce17be7aee1f2f70e29a234c9264b54bp@chrX:37664331..37664352, +
2.39e-116FFCP PHASE1:Hg19::chr1:150724282..150724308,-#_792e21eaa596bcaaff40ad7cec006a11p8@CTSS
2.39e-116FFCP PHASE2:Hg19::chr1:150724282..150724308,-#_792e21eaa596bcaaff40ad7cec006a11p8@CTSS
1.34e-115FFCP PHASE1:Hg19::chr8:116588888..116588904,+#_b604446f45a133ff2a1f348e89a8c1fep@chr8:116588888..116588904, +
1.34e-115FFCP PHASE2:Hg19::chr8:116588888..116588904,+#_b604446f45a133ff2a1f348e89a8c1fep@chr8:116588888..116588904, +
2.12e-115FFCP PHASE2:Hg19::chr4:159727272..159727307,+#_13c8636f815a2dc35736d3b5e52538ffp7@FNIP2
2.12e-115FFCP PHASE1:Hg19::chr4:159727272..159727307,+#_13c8636f815a2dc35736d3b5e52538ffp7@FNIP2
1.16e-114FFCP PHASE2:Hg19::chr20:1517991..1518011,-#_45798ea27607ad7ea2a78ffb906566aap@chr20:1517991..1518011, -
1.16e-114FFCP PHASE1:Hg19::chr20:1517991..1518011,-#_45798ea27607ad7ea2a78ffb906566aap@chr20:1517991..1518011, -
1.61e-114FFCP PHASE2:Hg19::chr4:3387239..3387324,-#_2c8f2579bcd66de664ec92280ac430e6p@chr4:3387239..3387324, -
1.61e-114FFCP PHASE1:Hg19::chr4:3387239..3387324,-#_2c8f2579bcd66de664ec92280ac430e6p@chr4:3387239..3387324, -
3.03e-114FFCP PHASE1:Hg19::chr19:18288914..18288931,-#_97fdf998513a2fd6d0534b4684fa14bep5@CU676849, p5@CU689079
3.03e-114FFCP PHASE2:Hg19::chr19:18288914..18288931,-#_97fdf998513a2fd6d0534b4684fa14bep5@CU676849, p5@CU689079
6.75e-114FFCP PHASE1:Hg19::chr19:18288514..18288554,+#_f09f57824752216d3ed2c293b137b9acp6@IFI30
6.75e-114FFCP PHASE2:Hg19::chr19:18288514..18288554,+#_f09f57824752216d3ed2c293b137b9acp6@IFI30
8.9e-114FFCP PHASE2:Hg19::chr5:180242576..180242585,-#_fbd015364ccdfa4cb3907319ce77a8ffp12@MGAT1
8.9e-114FFCP PHASE1:Hg19::chr5:180242576..180242585,-#_fbd015364ccdfa4cb3907319ce77a8ffp12@MGAT1
6.02e-113FFCP PHASE2:Hg19::chr17:7483714..7483726,+#_4a1295e6cd2865340d949e9b3bffc32cp@chr17:7483714..7483726, +
6.02e-113FFCP PHASE1:Hg19::chr17:7483714..7483726,+#_4a1295e6cd2865340d949e9b3bffc32cp@chr17:7483714..7483726, +
1.37e-112FFCP PHASE1:Hg19::chr1:161187774..161187799,+#_d8a14b4b90bd21799cce160a5771a1b5p@chr1:161187774..161187799, +
1.37e-112FFCP PHASE2:Hg19::chr1:161187774..161187799,+#_d8a14b4b90bd21799cce160a5771a1b5p@chr1:161187774..161187799, +
3.6e-112FFCP PHASE1:Hg19::chr14:103587759..103587770,+#_8f0e5b4f101a302f83471c65b4f4098cp@chr14:103587759..103587770, +
3.6e-112FFCP PHASE2:Hg19::chr14:103587759..103587770,+#_8f0e5b4f101a302f83471c65b4f4098cp@chr14:103587759..103587770, +
4.38e-112FFCP PHASE1:Hg19::chr19:51625924..51625942,+#_8ab81d4001fa95e3c5f35ef9c28af576p@chr19:51625924..51625942, +
4.38e-112FFCP PHASE2:Hg19::chr19:51625924..51625942,+#_8ab81d4001fa95e3c5f35ef9c28af576p@chr19:51625924..51625942, +
4.49e-112FFCP PHASE2:Hg19::chr22:46998103..46998127,-#_1d3e42d4a69184213853612449e04416p@chr22:46998103..46998127, -
4.49e-112FFCP PHASE1:Hg19::chr22:46998103..46998127,-#_1d3e42d4a69184213853612449e04416p@chr22:46998103..46998127, -
7.77e-112FFCP PHASE2:Hg19::chr4:185266972..185267007,+#_5dcceab1d3a1dfdb8d46723b7f679848p@chr4:185266972..185267007, +
7.77e-112FFCP PHASE1:Hg19::chr4:185266972..185267007,+#_5dcceab1d3a1dfdb8d46723b7f679848p@chr4:185266972..185267007, +
1.05e-111FFCP PHASE2:Hg19::chr19:18285955..18285972,+#_53e1a71abd0a49cb68fc59414c07076cp@chr19:18285955..18285972, +
1.05e-111FFCP PHASE1:Hg19::chr19:18285955..18285972,+#_53e1a71abd0a49cb68fc59414c07076cp@chr19:18285955..18285972, +
4.87e-111FFCP PHASE2:Hg19::chr15:59469817..59469836,+#_dfaac7537c7725eebd8079f1103018a6p@chr15:59469817..59469836, +
4.87e-111FFCP PHASE1:Hg19::chr15:59469817..59469836,+#_dfaac7537c7725eebd8079f1103018a6p@chr15:59469817..59469836, +
5.17e-111FFCP PHASE1:Hg19::chr4:7655804..7655844,-#_109b7c6e2f6e39f1c29fc3d14f84a359p@chr4:7655804..7655844, -
5.17e-111FFCP PHASE2:Hg19::chr4:7655804..7655844,-#_109b7c6e2f6e39f1c29fc3d14f84a359p@chr4:7655804..7655844, -
8.34e-111FFCP PHASE1:Hg19::chr2:145276939..145276960,+#_a1e41edb1c0f6734e37bebda618774adp2@ZEB2-AS1
8.34e-111FFCP PHASE2:Hg19::chr2:145276939..145276960,+#_a1e41edb1c0f6734e37bebda618774adp2@ZEB2-AS1
1.03e-110FFCP PHASE1:Hg19::chrX:152086449..152086473,+#_7bc221588adb63bce6249adfa21a62bep4@ZNF185
1.03e-110FFCP PHASE2:Hg19::chrX:152086449..152086473,+#_7bc221588adb63bce6249adfa21a62bep4@ZNF185
1.37e-110FFCP PHASE2:Hg19::chr7:2832730..2832791,+#_74ace9837a5e0648dc8b5da3d360b2c8p@chr7:2832730..2832791, +
1.37e-110FFCP PHASE1:Hg19::chr7:2832730..2832791,+#_74ace9837a5e0648dc8b5da3d360b2c8p@chr7:2832730..2832791, +
1.56e-110FFCP PHASE2:Hg19::chr20:1517945..1517963,-#_0c5de6962764048c34357cd2d47b9bfcp@chr20:1517945..1517963, -
1.56e-110FFCP PHASE1:Hg19::chr20:1517945..1517963,-#_0c5de6962764048c34357cd2d47b9bfcp@chr20:1517945..1517963, -
8.94e-110FFCP PHASE2:Hg19::chr5:77845080..77845099,-#_5116408089658b41e9c4109208a0a57bp10@LHFPL2
8.94e-110FFCP PHASE1:Hg19::chr5:77845080..77845099,-#_5116408089658b41e9c4109208a0a57bp10@LHFPL2
1.06e-109FFCP PHASE2:Hg19::chr2:129283966..129283970,+#_34b7569b005ae72ddc32f0b31c023b00p@chr2:129283966..129283970, +
1.06e-109FFCP PHASE1:Hg19::chr2:129283966..129283970,+#_34b7569b005ae72ddc32f0b31c023b00p@chr2:129283966..129283970, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=CL:0000839&oldid=3272034"