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{{CL
{{CL
|id=CL:0000192
|alt_id=CL:0000191
|name=smooth muscle cell
|namespace=cell;;efo
|def="A non-striated, elongated, spindle-shaped cell found lining the digestive tract, uterus, and blood vessels. They develop from specialized myoblasts (smooth muscle myoblast)." [MESH:A.11.620.520, MESH:D032389, PMID:9315361]
|xref=BTO:0004576;;FMA:14072
|is_a=CL:0000187
|synonym="myocytes, smooth muscle" EXACT [MESH:D032389];;"non-striated muscle cell" EXACT [];;"SMCs" EXACT [PMID:9315361];;"smooth muscle fiber" EXACT []
|comment=
|comment=
|alt_id=CL:0000191
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A non-striated, elongated, spindle-shaped cell found lining the digestive tract, uterus, and blood vessels. They develop from specialized myoblasts (smooth muscle myoblast)." [MESH:A.11.620.520, MESH:D032389, PMID:9315361]
|subset=
|derives_from=
|derives_from=
|develops_from=CL:0000514
|develops_from=CL:0000514
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0000192
|is_a=CL:0008000 ;;CL:0008007
|is_obsolete=
|located_in=
|located_in=
|name=smooth muscle cell
|namespace=cell;;efo
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="myocytes, smooth muscle" EXACT [MESH:D032389];;"non-striated muscle cell" EXACT [];;"SMCs" EXACT [PMID:9315361];;"smooth muscle fiber" EXACT []
|union_of=
|xref=BTO:0004576;;FMA:14072
}}
}}

Revision as of 10:15, 12 September 2014

Name:smooth muscle cell
Namespace:cell;;efo
Definition:"A non-striated, elongated, spindle-shaped cell found lining the digestive tract, uterus, and blood vessels. They develop from specialized myoblasts (smooth muscle myoblast)." [MESH:A.11.620.520, MESH:D032389, PMID:9315361]
Xrefs:
links:

BTO:0004576

FMA:14072
Synonyms: "myocytes, smooth muscle" EXACT [MESH:D032389]
"non-striated muscle cell" EXACT []
"SMCs" EXACT [PMID:9315361]
"smooth muscle fiber" EXACT []
Alt_id: CL:0000191


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0008000(non-striated muscle cell),CL:0008007(visceral muscle cell)
develops_from:CL:0000514(smooth muscle myoblast)



Children


is a:CL:0000359 (vascular associated smooth muscle cell),CL:0002504 (enteric smooth muscle cell),CL:0002597 (smooth muscle cell of bladder),CL:0002598 (bronchial smooth muscle cell),CL:0002599 (smooth muscle cell of the esophagus),CL:0002600 (smooth muscle cell of trachea),CL:0002601 (uterine smooth muscle cell),CL:1000487 (smooth muscle cell of prostate)
derives from:FF:0000167 (smooth muscle cell sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000192 (smooth muscle cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.58e-86FFCP PHASE1:Mm9::chr11:50416871..50416882,+#_dd44eebcd849e13d17ead1f28e6e8ee0p5@Adamts2
1.58e-86FFCP PHASE2:Mm9::chr2:178190171..178190178,+#_dd44eebcd849e13d17ead1f28e6e8ee0p@chr2:178190171..178190178, +
1.58e-86FFCP PHASE1:Mm9::chr17:14827154..14827169,-#_dd44eebcd849e13d17ead1f28e6e8ee0p@chr17:14827154..14827169, -
1.58e-86FFCP PHASE2:Mm9::chr2:112043522..112043530,-#_dd44eebcd849e13d17ead1f28e6e8ee0p@chr2:112043522..112043530, -
1.58e-86FFCP PHASE1:Mm9::chr17:14802633..14802637,-#_dd44eebcd849e13d17ead1f28e6e8ee0p@chr17:14802633..14802637, -
1.58e-86FFCP PHASE2:Mm9::chr8:69228447..69228492,+#_dd44eebcd849e13d17ead1f28e6e8ee0p@chr8:69228447..69228492, +
1.58e-86FFCP PHASE2:Mm9::chrX:160839744..160839754,+#_dd44eebcd849e13d17ead1f28e6e8ee0p@chrX:160839744..160839754, +
1.58e-86FFCP PHASE1:Mm9::chr17:87574327..87574332,+#_dd44eebcd849e13d17ead1f28e6e8ee0p@chr17:87574327..87574332, +
1.58e-86FFCP PHASE2:Mm9::chr17:87574327..87574332,+#_dd44eebcd849e13d17ead1f28e6e8ee0p@chr17:87574327..87574332, +
1.58e-86FFCP PHASE1:Mm9::chr2:112043522..112043530,-#_dd44eebcd849e13d17ead1f28e6e8ee0p@chr2:112043522..112043530, -
1.58e-86FFCP PHASE2:Mm9::chr17:14827154..14827169,-#_dd44eebcd849e13d17ead1f28e6e8ee0p@chr17:14827154..14827169, -
1.58e-86FFCP PHASE1:Mm9::chr2:178190171..178190178,+#_dd44eebcd849e13d17ead1f28e6e8ee0p@chr2:178190171..178190178, +
1.58e-86FFCP PHASE2:Mm9::chr17:14802633..14802637,-#_dd44eebcd849e13d17ead1f28e6e8ee0p@chr17:14802633..14802637, -
1.58e-86FFCP PHASE1:Mm9::chrX:160839744..160839754,+#_dd44eebcd849e13d17ead1f28e6e8ee0p@chrX:160839744..160839754, +
1.58e-86FFCP PHASE1:Mm9::chr8:69228447..69228492,+#_dd44eebcd849e13d17ead1f28e6e8ee0p@chr8:69228447..69228492, +
1.58e-86FFCP PHASE2:Mm9::chr11:50416871..50416882,+#_dd44eebcd849e13d17ead1f28e6e8ee0p5@Adamts2
9.37e-70FFCP PHASE1:Hg19::chr6:53359400..53359406,+#_4b03f63a090e767018f803386697dd11p@chr6:53359400..53359406, +
9.37e-70FFCP PHASE2:Hg19::chr6:53359400..53359406,+#_4b03f63a090e767018f803386697dd11p@chr6:53359400..53359406, +
1.33e-65FFCP PHASE2:Mm9::chr11:118164535..118164544,-#_0aaa2917831255f58d49f25f052c9873p@chr11:118164535..118164544, -
1.33e-65FFCP PHASE2:Mm9::chr8:69221163..69221172,+#_0aaa2917831255f58d49f25f052c9873p6@Npy1r
1.33e-65FFCP PHASE2:Mm9::chrX:160840025..160840037,+#_0aaa2917831255f58d49f25f052c9873p@chrX:160840025..160840037, +
1.33e-65FFCP PHASE1:Mm9::chrX:160840025..160840037,+#_0aaa2917831255f58d49f25f052c9873p@chrX:160840025..160840037, +
1.33e-65FFCP PHASE2:Mm9::chr6:128920492..128920498,-#_0aaa2917831255f58d49f25f052c9873p@chr6:128920492..128920498, -
1.33e-65FFCP PHASE2:Mm9::chrX:160840048..160840057,+#_0aaa2917831255f58d49f25f052c9873p@chrX:160840048..160840057, +
1.33e-65FFCP PHASE1:Mm9::chrX:160840048..160840057,+#_0aaa2917831255f58d49f25f052c9873p@chrX:160840048..160840057, +
1.33e-65FFCP PHASE1:Mm9::chr6:128920492..128920498,-#_0aaa2917831255f58d49f25f052c9873p@chr6:128920492..128920498, -
1.33e-65FFCP PHASE2:Mm9::chr17:71340031..71340044,-#_0aaa2917831255f58d49f25f052c9873p5@Myl12b
1.33e-65FFCP PHASE1:Mm9::chr11:118164535..118164544,-#_0aaa2917831255f58d49f25f052c9873p@chr11:118164535..118164544, -
1.33e-65FFCP PHASE1:Mm9::chr8:69221163..69221172,+#_0aaa2917831255f58d49f25f052c9873p6@Npy1r
1.33e-65FFCP PHASE1:Mm9::chr17:71340031..71340044,-#_0aaa2917831255f58d49f25f052c9873p5@Myl12b
2.21e-65FFCP PHASE2:Mm9::chr4:145000183..145000220,+#_50fb5f288f5ca571e58f788349f86beep1@ENSMUST00000150529
2.21e-65FFCP PHASE1:Mm9::chr4:145000183..145000220,+#_50fb5f288f5ca571e58f788349f86beep1@ENSMUST00000150529
3.28e-58FFCP PHASE2:Mm9::chr10:33816181..33816195,-#_24e57cb8e99c9c35a9a56b6be3749391p@chr10:33816181..33816195, -
3.28e-58FFCP PHASE1:Mm9::chr14:24251697..24251707,+#_24e57cb8e99c9c35a9a56b6be3749391p@chr14:24251697..24251707, +
3.28e-58FFCP PHASE1:Mm9::chr8:69857155..69857159,+#_24e57cb8e99c9c35a9a56b6be3749391p@chr8:69857155..69857159, +
3.28e-58FFCP PHASE2:Mm9::chr17:78907550..78907557,+#_24e57cb8e99c9c35a9a56b6be3749391p8@Vit
3.28e-58FFCP PHASE2:Mm9::chr10:96946110..96946113,+#_24e57cb8e99c9c35a9a56b6be3749391p@chr10:96946110..96946113, +
3.28e-58FFCP PHASE1:Mm9::chr10:96946110..96946113,+#_24e57cb8e99c9c35a9a56b6be3749391p@chr10:96946110..96946113, +
3.28e-58FFCP PHASE1:Mm9::chr17:87544959..87544962,+#_24e57cb8e99c9c35a9a56b6be3749391p@chr17:87544959..87544962, +
3.28e-58FFCP PHASE2:Mm9::chr17:87544959..87544962,+#_24e57cb8e99c9c35a9a56b6be3749391p@chr17:87544959..87544962, +
3.28e-58FFCP PHASE2:Mm9::chr17:14817013..14817022,-#_24e57cb8e99c9c35a9a56b6be3749391p@chr17:14817013..14817022, -
3.28e-58FFCP PHASE2:Mm9::chrX:160839012..160839023,+#_24e57cb8e99c9c35a9a56b6be3749391p@chrX:160839012..160839023, +
3.28e-58FFCP PHASE2:Mm9::chr1:127573425..127573432,+#_24e57cb8e99c9c35a9a56b6be3749391p12@Gpr39
3.28e-58FFCP PHASE1:Mm9::chr1:127573425..127573432,+#_24e57cb8e99c9c35a9a56b6be3749391p12@Gpr39
3.28e-58FFCP PHASE2:Mm9::chr14:24251697..24251707,+#_24e57cb8e99c9c35a9a56b6be3749391p@chr14:24251697..24251707, +
3.28e-58FFCP PHASE1:Mm9::chr17:78907550..78907557,+#_24e57cb8e99c9c35a9a56b6be3749391p8@Vit
3.28e-58FFCP PHASE2:Mm9::chrX:160811352..160811356,-#_24e57cb8e99c9c35a9a56b6be3749391p@chrX:160811352..160811356, -
3.28e-58FFCP PHASE2:Mm9::chr8:69857155..69857159,+#_24e57cb8e99c9c35a9a56b6be3749391p@chr8:69857155..69857159, +
3.28e-58FFCP PHASE1:Mm9::chrX:160811352..160811356,-#_24e57cb8e99c9c35a9a56b6be3749391p@chrX:160811352..160811356, -
3.28e-58FFCP PHASE1:Mm9::chrX:160839012..160839023,+#_24e57cb8e99c9c35a9a56b6be3749391p@chrX:160839012..160839023, +
3.28e-58FFCP PHASE1:Mm9::chr17:14817013..14817022,-#_24e57cb8e99c9c35a9a56b6be3749391p@chr17:14817013..14817022, -
3.28e-58FFCP PHASE1:Mm9::chr10:33816181..33816195,-#_24e57cb8e99c9c35a9a56b6be3749391p@chr10:33816181..33816195, -
4.9e-53FFCP PHASE1:Mm9::chr7:91081998..91082010,-#_6d6050f18e11db5e6ad9cd5aa5b18a3cp@chr7:91081998..91082010, -
4.9e-53FFCP PHASE1:Mm9::chr10:67821185..67821217,-#_6d6050f18e11db5e6ad9cd5aa5b18a3cp@chr10:67821185..67821217, -
4.9e-53FFCP PHASE2:Mm9::chr10:67821185..67821217,-#_6d6050f18e11db5e6ad9cd5aa5b18a3cp@chr10:67821185..67821217, -
4.9e-53FFCP PHASE2:Mm9::chr2:113589030..113589077,-#_6d6050f18e11db5e6ad9cd5aa5b18a3cp@chr2:113589030..113589077, -
4.9e-53FFCP PHASE1:Mm9::chr17:29227828..29227839,-#_6d6050f18e11db5e6ad9cd5aa5b18a3cp@chr17:29227828..29227839, -
4.9e-53FFCP PHASE1:Mm9::chr14:24251717..24251731,+#_6d6050f18e11db5e6ad9cd5aa5b18a3cp@chr14:24251717..24251731, +
4.9e-53FFCP PHASE1:Mm9::chr10:67598037..67598049,-#_6d6050f18e11db5e6ad9cd5aa5b18a3cp@chr10:67598037..67598049, -
4.9e-53FFCP PHASE1:Mm9::chr8:69221150..69221161,+#_6d6050f18e11db5e6ad9cd5aa5b18a3cp5@Npy1r
4.9e-53FFCP PHASE2:Mm9::chr7:91081998..91082010,-#_6d6050f18e11db5e6ad9cd5aa5b18a3cp@chr7:91081998..91082010, -
4.9e-53FFCP PHASE2:Mm9::chr13:113253807..113253846,+#_6d6050f18e11db5e6ad9cd5aa5b18a3cp4@Il6st
4.9e-53FFCP PHASE1:Mm9::chr13:113253807..113253846,+#_6d6050f18e11db5e6ad9cd5aa5b18a3cp4@Il6st
4.9e-53FFCP PHASE2:Mm9::chr14:24251717..24251731,+#_6d6050f18e11db5e6ad9cd5aa5b18a3cp@chr14:24251717..24251731, +
4.9e-53FFCP PHASE2:Mm9::chr17:29227828..29227839,-#_6d6050f18e11db5e6ad9cd5aa5b18a3cp@chr17:29227828..29227839, -
4.9e-53FFCP PHASE1:Mm9::chr2:113589030..113589077,-#_6d6050f18e11db5e6ad9cd5aa5b18a3cp@chr2:113589030..113589077, -
4.9e-53FFCP PHASE2:Mm9::chr10:67598037..67598049,-#_6d6050f18e11db5e6ad9cd5aa5b18a3cp@chr10:67598037..67598049, -
4.9e-53FFCP PHASE2:Mm9::chr8:69221150..69221161,+#_6d6050f18e11db5e6ad9cd5aa5b18a3cp5@Npy1r
6.91e-53FFCP PHASE2:Hg19::chr11:102661517..102661541,-#_0d9a8634fea897b0035bf9915fe27578p@chr11:102661517..102661541, -
6.91e-53FFCP PHASE1:Hg19::chr11:102661517..102661541,-#_0d9a8634fea897b0035bf9915fe27578p@chr11:102661517..102661541, -
7.35e-53FFCP PHASE2:Mm9::chr4:58219542..58219545,-#_013dc3abf568aaac1cc9b9e622355b67p11@Svep1
7.35e-53FFCP PHASE1:Mm9::chr4:58219542..58219545,-#_013dc3abf568aaac1cc9b9e622355b67p11@Svep1
1.1e-52FFCP PHASE1:Mm9::chrX:160838787..160838800,+#_662f25b7a9e29e6a939bc25e610d52c1p@chrX:160838787..160838800, +
1.1e-52FFCP PHASE2:Mm9::chrX:160838787..160838800,+#_662f25b7a9e29e6a939bc25e610d52c1p@chrX:160838787..160838800, +
1.65e-52FFCP PHASE2:Mm9::chr1:137662814..137662817,+#_bbc18b1a34f62ef81543b7b3e23112a6p5@Phlda3
1.65e-52FFCP PHASE1:Mm9::chr1:137662814..137662817,+#_bbc18b1a34f62ef81543b7b3e23112a6p5@Phlda3
2.52e-52FFCP PHASE2:Hg19::chr4:74703497..74703511,+#_6302d5152884ff54082f7165ea5a5ca5p@chr4:74703497..74703511, +
2.52e-52FFCP PHASE1:Hg19::chr4:74703497..74703511,+#_6302d5152884ff54082f7165ea5a5ca5p@chr4:74703497..74703511, +
5.51e-52FFCP PHASE1:Mm9::chr2:65009852..65009866,-#_79016b64a55830bc0163dacc3b5b8855p@chr2:65009852..65009866, -
5.51e-52FFCP PHASE2:Mm9::chr2:65009852..65009866,-#_79016b64a55830bc0163dacc3b5b8855p@chr2:65009852..65009866, -
5.68e-52FFCP PHASE2:Hg19::chr4:7846444..7846449,-#_3d781c85e3d3b760f6338e6e7bc6b76fp@chr4:7846444..7846449, -
5.68e-52FFCP PHASE1:Hg19::chr4:7846444..7846449,-#_3d781c85e3d3b760f6338e6e7bc6b76fp@chr4:7846444..7846449, -
2.41e-47FFCP PHASE1:Hg19::chr2:134548872..134548879,-#_6b8525e31225e32011389c2221f14697p@chr2:134548872..134548879, -
2.41e-47FFCP PHASE2:Hg19::chr2:134548872..134548879,-#_6b8525e31225e32011389c2221f14697p@chr2:134548872..134548879, -
2.91e-46FFCP PHASE2:Hg19::chr4:74703963..74703975,+#_d815ef8583cd71c076d39b0c40d078d6p@chr4:74703963..74703975, +
2.91e-46FFCP PHASE1:Hg19::chr4:74703963..74703975,+#_d815ef8583cd71c076d39b0c40d078d6p@chr4:74703963..74703975, +
1.18e-44FFCP PHASE1:Mm9::chrX:160838683..160838694,+#_bf069025b80258c733dbb19a2a4e7006p@chrX:160838683..160838694, +
1.18e-44FFCP PHASE1:Mm9::chr13:119579287..119579292,+#_bf069025b80258c733dbb19a2a4e7006p@chr13:119579287..119579292, +
1.18e-44FFCP PHASE2:Mm9::chr1:127573864..127573879,+#_bf069025b80258c733dbb19a2a4e7006p10@Gpr39
1.18e-44FFCP PHASE1:Mm9::chr1:127573864..127573879,+#_bf069025b80258c733dbb19a2a4e7006p10@Gpr39
1.18e-44FFCP PHASE2:Mm9::chr11:86417559..86417568,+#_bf069025b80258c733dbb19a2a4e7006p@chr11:86417559..86417568, +
1.18e-44FFCP PHASE1:Mm9::chr11:86417559..86417568,+#_bf069025b80258c733dbb19a2a4e7006p@chr11:86417559..86417568, +
1.18e-44FFCP PHASE1:Mm9::chr17:14813242..14813246,-#_bf069025b80258c733dbb19a2a4e7006p@chr17:14813242..14813246, -
1.18e-44FFCP PHASE1:Mm9::chr2:178190136..178190151,+#_bf069025b80258c733dbb19a2a4e7006p@chr2:178190136..178190151, +
1.18e-44FFCP PHASE2:Mm9::chr13:119579287..119579292,+#_bf069025b80258c733dbb19a2a4e7006p@chr13:119579287..119579292, +
1.18e-44FFCP PHASE2:Mm9::chrX:160838683..160838694,+#_bf069025b80258c733dbb19a2a4e7006p@chrX:160838683..160838694, +
1.18e-44FFCP PHASE2:Mm9::chr2:178190136..178190151,+#_bf069025b80258c733dbb19a2a4e7006p@chr2:178190136..178190151, +
1.18e-44FFCP PHASE2:Mm9::chr17:14813242..14813246,-#_bf069025b80258c733dbb19a2a4e7006p@chr17:14813242..14813246, -
1.66e-44FFCP PHASE2:Mm9::chrX:160839663..160839673,+#_5a7182626c782173895b1888236af834p@chrX:160839663..160839673, +
1.66e-44FFCP PHASE2:Mm9::chr13:119503185..119503195,+#_5a7182626c782173895b1888236af834p9@Fgf10

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