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{{CL
{{CL
|id=CL:0000552
|alt_id=
|name=orthochromatic erythroblast
|namespace=cell;;efo
|def="The final stage of the nucleated, immature erythrocyte, before nuclear loss. Typically the cytoplasm is described as acidophilic, but it still shows a faint polychromatic tint. The nucleus is small and initially may still have coarse, clumped chromatin, as in its precursor, the polychromatophilic erythroblast, but ultimately it becomes pyknotic, and appears as a deeply staining, blue-black, homogeneous structureless mass. The nucleus is often eccentric and sometimes lobulated." [ISBN:0721601464]
|xref=FMA:84646
|is_a=CL:0000765
|synonym="acidophilic erythroblast" EXACT [ISBN:0721601464];;"eosinophilic erythroblast" EXACT [ISBN:0721601464];;"late erythoblast" EXACT [];;"orthochromatic normoblast" EXACT [ISBN:0721601464];;"pyknotic eto enrythroblast" EXACT [ISBN:0721601464]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="The final stage of the nucleated, immature erythrocyte, before nuclear loss. Typically the cytoplasm is described as acidophilic, but it still shows a faint polychromatic tint. The nucleus is small and initially may still have coarse, clumped chromatin, as in its precursor, the polychromatophilic erythroblast, but ultimately it becomes pyknotic, and appears as a deeply staining, blue-black, homogeneous structureless mass. The nucleus is often eccentric and sometimes lobulated." [ISBN:0721601464]
|subset=
|derives_from=
|derives_from=
|develops_from=CL:0000550
|develops_from=CL:0000550
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0000552
|is_a=CL:0000765
|is_obsolete=
|located_in=
|located_in=
|name=orthochromatic erythroblast
|namespace=cell;;efo
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="acidophilic erythroblast" EXACT [ISBN:0721601464];;"eosinophilic erythroblast" EXACT [ISBN:0721601464];;"late erythoblast" EXACT [];;"orthochromatic normoblast" EXACT [ISBN:0721601464];;"pyknotic eto enrythroblast" EXACT [ISBN:0721601464]
|union_of=
|xref=FMA:84646
}}
}}

Revision as of 10:18, 12 September 2014

Name:orthochromatic erythroblast
Namespace:cell;;efo
Definition:"The final stage of the nucleated, immature erythrocyte, before nuclear loss. Typically the cytoplasm is described as acidophilic, but it still shows a faint polychromatic tint. The nucleus is small and initially may still have coarse, clumped chromatin, as in its precursor, the polychromatophilic erythroblast, but ultimately it becomes pyknotic, and appears as a deeply staining, blue-black, homogeneous structureless mass. The nucleus is often eccentric and sometimes lobulated." [ISBN:0721601464]
Xrefs:
links:
FMA:84646
Synonyms: "acidophilic erythroblast" EXACT [ISBN:0721601464]
"eosinophilic erythroblast" EXACT [ISBN:0721601464]
"late erythoblast" EXACT []
"orthochromatic normoblast" EXACT [ISBN:0721601464]
"pyknotic eto enrythroblast" EXACT [ISBN:0721601464]


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000765(erythroblast)
develops_from:CL:0000550(polychromatophilic erythroblast)



Children


develops from:CL:0000558 (reticulocyte)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.



Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000552 (orthochromatic erythroblast), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.29e-195FFCP PHASE1:Hg19::chr13:106256314..106256318,+#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr13:106256314..106256318, +
3.29e-195FFCP PHASE1:Hg19::chr12:131245491..131245492,+#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr12:131245491..131245492, +
3.29e-195FFCP PHASE1:Hg19::chr6:10585672..10585677,+#_ccf2239d507bb0b2b1ce7b5538a0129fp42@GCNT2
3.29e-195FFCP PHASE2:Hg19::chr16:15616042..15616045,+#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr16:15616042..15616045, +
3.29e-195FFCP PHASE2:Hg19::chr1:95582484..95582492,+#_ccf2239d507bb0b2b1ce7b5538a0129fp10@TMEM56
3.29e-195FFCP PHASE2:Hg19::chr6:10585661..10585670,+#_ccf2239d507bb0b2b1ce7b5538a0129fp26@GCNT2
3.29e-195FFCP PHASE2:Hg19::chr1:25598993..25599007,+#_ccf2239d507bb0b2b1ce7b5538a0129fp1@RHD
3.29e-195FFCP PHASE2:Hg19::chr19:1207927..1207939,-#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr19:1207927..1207939, -
3.29e-195FFCP PHASE2:Hg19::chr17:42366115..42366125,+#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr17:42366115..42366125, +
3.29e-195FFCP PHASE2:Hg19::chr1:220146675..220146678,-#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr1:220146675..220146678, -
3.29e-195FFCP PHASE1:Hg19::chr9:123853258..123853276,-#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr9:123853258..123853276, -
3.29e-195FFCP PHASE1:Hg19::chr16:15616042..15616045,+#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr16:15616042..15616045, +
3.29e-195FFCP PHASE2:Hg19::chr6:155472342..155472346,-#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr6:155472342..155472346, -
3.29e-195FFCP PHASE1:Hg19::chr4:26378984..26378987,+#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr4:26378984..26378987, +
3.29e-195FFCP PHASE1:Hg19::chr3:49726589..49726592,+#_ccf2239d507bb0b2b1ce7b5538a0129fp7@RNF123
3.29e-195FFCP PHASE2:Hg19::chr1:5543682..5543685,+#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr1:5543682..5543685, +
3.29e-195FFCP PHASE2:Hg19::chr12:75560876..75560881,+#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr12:75560876..75560881, +
3.29e-195FFCP PHASE1:Hg19::chr17:27188395..27188398,-#_ccf2239d507bb0b2b1ce7b5538a0129fp1@MIR451A
3.29e-195FFCP PHASE2:Hg19::chr4:82805715..82805717,+#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr4:82805715..82805717, +
3.29e-195FFCP PHASE2:Hg19::chr11:115492263..115492265,+#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr11:115492263..115492265, +
3.29e-195FFCP PHASE1:Hg19::chr2:112191654..112191660,-#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr2:112191654..112191660, -
3.29e-195FFCP PHASE2:Hg19::chr16:67228546..67228549,+#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr16:67228546..67228549, +
3.29e-195FFCP PHASE2:Hg19::chr15:71406717..71406718,+#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr15:71406717..71406718, +
3.29e-195FFCP PHASE1:Hg19::chr12:75560876..75560881,+#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr12:75560876..75560881, +
3.29e-195FFCP PHASE2:Hg19::chr7:23205201..23205207,+#_ccf2239d507bb0b2b1ce7b5538a0129fp13@KLHL7
3.29e-195FFCP PHASE2:Hg19::chr14:96742091..96742094,-#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr14:96742091..96742094, -
3.29e-195FFCP PHASE2:Hg19::chr12:131245491..131245492,+#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr12:131245491..131245492, +
3.29e-195FFCP PHASE1:Hg19::chr4:160049078..160049079,+#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr4:160049078..160049079, +
3.29e-195FFCP PHASE2:Hg19::chr17:42343955..42343974,-#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr17:42343955..42343974, -
3.29e-195FFCP PHASE2:Hg19::chr4:175593804..175593809,+#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr4:175593804..175593809, +
3.29e-195FFCP PHASE1:Hg19::chr10:94679592..94679594,-#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr10:94679592..94679594, -
3.29e-195FFCP PHASE1:Hg19::chr1:25598961..25598966,+#_ccf2239d507bb0b2b1ce7b5538a0129fp5@RHD
3.29e-195FFCP PHASE1:Hg19::chr14:96742091..96742094,-#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr14:96742091..96742094, -
3.29e-195FFCP PHASE1:Hg19::chr6:10585684..10585689,+#_ccf2239d507bb0b2b1ce7b5538a0129fp37@GCNT2
3.29e-195FFCP PHASE1:Hg19::chr15:71406717..71406718,+#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr15:71406717..71406718, +
3.29e-195FFCP PHASE1:Hg19::chr8:101412217..101412218,+#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr8:101412217..101412218, +
3.29e-195FFCP PHASE1:Hg19::chr17:42366115..42366125,+#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr17:42366115..42366125, +
3.29e-195FFCP PHASE1:Hg19::chr6:50700492..50700495,+#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr6:50700492..50700495, +
3.29e-195FFCP PHASE2:Hg19::chr6:10585672..10585677,+#_ccf2239d507bb0b2b1ce7b5538a0129fp42@GCNT2
3.29e-195FFCP PHASE2:Hg19::chr1:25599018..25599028,+#_ccf2239d507bb0b2b1ce7b5538a0129fp3@RHD
3.29e-195FFCP PHASE1:Hg19::chr9:45465498..45465501,+#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr9:45465498..45465501, +
3.29e-195FFCP PHASE2:Hg19::chr17:42392517..42392522,+#_ccf2239d507bb0b2b1ce7b5538a0129fp17@RUNDC3A
3.29e-195FFCP PHASE1:Hg19::chrX:107332036..107332041,+#_ccf2239d507bb0b2b1ce7b5538a0129fp@chrX:107332036..107332041, +
3.29e-195FFCP PHASE2:Hg19::chr2:71833597..71833600,+#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr2:71833597..71833600, +
3.29e-195FFCP PHASE2:Hg19::chr4:190941380..190941381,+#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr4:190941380..190941381, +
3.29e-195FFCP PHASE2:Hg19::chr3:49726561..49726577,+#_ccf2239d507bb0b2b1ce7b5538a0129fp3@RNF123
3.29e-195FFCP PHASE2:Hg19::chr19:19535964..19535966,+#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr19:19535964..19535966, +
3.29e-195FFCP PHASE1:Hg19::chr3:49726593..49726603,+#_ccf2239d507bb0b2b1ce7b5538a0129fp4@RNF123
3.29e-195FFCP PHASE2:Hg19::chr9:123853258..123853276,-#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr9:123853258..123853276, -
3.29e-195FFCP PHASE1:Hg19::chr1:207823590..207823599,+#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr1:207823590..207823599, +
3.29e-195FFCP PHASE1:Hg19::chr11:66676050..66676060,+#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr11:66676050..66676060, +
3.29e-195FFCP PHASE2:Hg19::chr1:158580993..158580998,-#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr1:158580993..158580998, -
3.29e-195FFCP PHASE1:Hg19::chr17:42343955..42343974,-#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr17:42343955..42343974, -
3.29e-195FFCP PHASE2:Hg19::chr9:138852021..138852030,+#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr9:138852021..138852030, +
3.29e-195FFCP PHASE2:Hg19::chr10:86596455..86596456,+#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr10:86596455..86596456, +
3.29e-195FFCP PHASE1:Hg19::chr11:115492263..115492265,+#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr11:115492263..115492265, +
3.29e-195FFCP PHASE1:Hg19::chr1:2250692..2250695,+#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr1:2250692..2250695, +
3.29e-195FFCP PHASE1:Hg19::chr1:25598971..25598977,+#_ccf2239d507bb0b2b1ce7b5538a0129fp4@RHD
3.29e-195FFCP PHASE2:Hg19::chr11:5247692..5247701,-#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr11:5247692..5247701, -
3.29e-195FFCP PHASE1:Hg19::chr17:42392517..42392522,+#_ccf2239d507bb0b2b1ce7b5538a0129fp17@RUNDC3A
3.29e-195FFCP PHASE1:Hg19::chr2:62801311..62801318,+#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr2:62801311..62801318, +
3.29e-195FFCP PHASE2:Hg19::chr6:10585684..10585689,+#_ccf2239d507bb0b2b1ce7b5538a0129fp37@GCNT2
3.29e-195FFCP PHASE1:Hg19::chr8:138915590..138915591,+#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr8:138915590..138915591, +
3.29e-195FFCP PHASE1:Hg19::chr21:27203678..27203684,+#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr21:27203678..27203684, +
3.29e-195FFCP PHASE1:Hg19::chr2:87816262..87816269,+#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr2:87816262..87816269, +
3.29e-195FFCP PHASE2:Hg19::chr11:66676050..66676060,+#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr11:66676050..66676060, +
3.29e-195FFCP PHASE1:Hg19::chr22:30680245..30680254,-#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr22:30680245..30680254, -
3.29e-195FFCP PHASE2:Hg19::chr4:26378984..26378987,+#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr4:26378984..26378987, +
3.29e-195FFCP PHASE2:Hg19::chr3:49726589..49726592,+#_ccf2239d507bb0b2b1ce7b5538a0129fp7@RNF123
3.29e-195FFCP PHASE2:Hg19::chr11:5255612..5255613,-#_ccf2239d507bb0b2b1ce7b5538a0129fp10@HBD
3.29e-195FFCP PHASE1:Hg19::chr16:67228546..67228549,+#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr16:67228546..67228549, +
3.29e-195FFCP PHASE2:Hg19::chr11:57415965..57415973,+#_ccf2239d507bb0b2b1ce7b5538a0129fp5@CLP1
3.29e-195FFCP PHASE2:Hg19::chr2:112191654..112191660,-#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr2:112191654..112191660, -
3.29e-195FFCP PHASE2:Hg19::chr11:29581179..29581180,+#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr11:29581179..29581180, +
3.29e-195FFCP PHASE1:Hg19::chr20:24432163..24432165,+#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr20:24432163..24432165, +
3.29e-195FFCP PHASE1:Hg19::chr11:57415965..57415973,+#_ccf2239d507bb0b2b1ce7b5538a0129fp5@CLP1
3.29e-195FFCP PHASE2:Hg19::chr13:78682773..78682778,+#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr13:78682773..78682778, +
3.29e-195FFCP PHASE1:Hg19::chr8:63838198..63838201,+#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr8:63838198..63838201, +
3.29e-195FFCP PHASE2:Hg19::chr14:55799575..55799582,+#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr14:55799575..55799582, +
3.29e-195FFCP PHASE2:Hg19::chr4:160049078..160049079,+#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr4:160049078..160049079, +
3.29e-195FFCP PHASE1:Hg19::chr13:78682773..78682778,+#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr13:78682773..78682778, +
3.29e-195FFCP PHASE2:Hg19::chr1:25598961..25598966,+#_ccf2239d507bb0b2b1ce7b5538a0129fp5@RHD
3.29e-195FFCP PHASE2:Hg19::chr16:227522..227524,+#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr16:227522..227524, +
3.29e-195FFCP PHASE2:Hg19::chr8:101412217..101412218,+#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr8:101412217..101412218, +
3.29e-195FFCP PHASE1:Hg19::chr1:95582484..95582492,+#_ccf2239d507bb0b2b1ce7b5538a0129fp10@TMEM56
3.29e-195FFCP PHASE1:Hg19::chr1:25598993..25599007,+#_ccf2239d507bb0b2b1ce7b5538a0129fp1@RHD
3.29e-195FFCP PHASE2:Hg19::chr11:5248435..5248444,+#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr11:5248435..5248444, +
3.29e-195FFCP PHASE2:Hg19::chr6:50700492..50700495,+#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr6:50700492..50700495, +
3.29e-195FFCP PHASE1:Hg19::chr1:220146675..220146678,-#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr1:220146675..220146678, -
3.29e-195FFCP PHASE2:Hg19::chr9:45465498..45465501,+#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr9:45465498..45465501, +
3.29e-195FFCP PHASE1:Hg19::chr10:86596455..86596456,+#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr10:86596455..86596456, +
3.29e-195FFCP PHASE1:Hg19::chr16:227522..227524,+#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr16:227522..227524, +
3.29e-195FFCP PHASE2:Hg19::chr11:5247730..5247736,-#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr11:5247730..5247736, -
3.29e-195FFCP PHASE1:Hg19::chr19:1207927..1207939,-#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr19:1207927..1207939, -
3.29e-195FFCP PHASE1:Hg19::chr6:155472342..155472346,-#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr6:155472342..155472346, -
3.29e-195FFCP PHASE1:Hg19::chr1:5543682..5543685,+#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr1:5543682..5543685, +
3.29e-195FFCP PHASE1:Hg19::chr7:23205190..23205198,+#_ccf2239d507bb0b2b1ce7b5538a0129fp10@KLHL7
3.29e-195FFCP PHASE2:Hg19::chrX:107332036..107332041,+#_ccf2239d507bb0b2b1ce7b5538a0129fp@chrX:107332036..107332041, +
3.29e-195FFCP PHASE1:Hg19::chr4:82805715..82805717,+#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr4:82805715..82805717, +
3.29e-195FFCP PHASE1:Hg19::chr11:5247692..5247701,-#_ccf2239d507bb0b2b1ce7b5538a0129fp@chr11:5247692..5247701, -

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