CL:0000808: Difference between revisions
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{{CL | {{CL | ||
| | |alt_id= | ||
|comment=Note that this type of thymocyte has passed the beta-selection checkpoint and is rapidly proliferating and beginning to rearrange the T cell receptor alpha chain. | |comment=Note that this type of thymocyte has passed the beta-selection checkpoint and is rapidly proliferating and beginning to rearrange the T cell receptor alpha chain. | ||
|created_by= | |created_by= | ||
| | |def="A thymocyte that has the phenotype CD4-negative, CD8-negative, CD44-negative, CD25-negative, and pre-TCR-positive." [GO_REF:0000031, GOC:add, GOC:tfm, ISBN:0781735149] | ||
|derives_from= | |derives_from= | ||
|develops_from=CL:0000807 | |develops_from=CL:0000807 | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=CL:0000808 | |||
|is_a=CL:0002489 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=DN4 thymocyte | |||
|namespace=cell;;efo | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl | ||
| | |subset= | ||
| | |synonym="DN4 alpha-beta immature T lymphocyte" EXACT [];;"DN4 alpha-beta immature T-lymphocyte" EXACT [];;"DN4 cell" EXACT [];;"DN4 immature T cell" EXACT [];;"DN4 immature T-cell" EXACT [];;"double negative 4" EXACT [];;"T.DN4.th" EXACT [] | ||
|union_of= | |||
|xref= | |||
}} | }} | ||
Revision as of 10:21, 12 September 2014
| Name: | DN4 thymocyte |
|---|---|
| Namespace: | cell;;efo |
| Definition: | "A thymocyte that has the phenotype CD4-negative, CD8-negative, CD44-negative, CD25-negative, and pre-TCR-positive." [GO_REF:0000031, GOC:add, GOC:tfm, ISBN:0781735149] |
| Synonyms: |
"DN4 alpha-beta immature T lymphocyte" EXACT [] "DN4 alpha-beta immature T-lymphocyte" EXACT [] "DN4 cell" EXACT [] "DN4 immature T cell" EXACT [] "DN4 immature T-cell" EXACT [] "double negative 4" EXACT [] "T.DN4.th" EXACT [] |
| Comments: | Note that this type of thymocyte has passed the beta-selection checkpoint and is rapidly proliferating and beginning to rearrange the T cell receptor alpha chain. |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0002489(double negative thymocyte) |
|---|---|
| develops_from: | CL:0000807(DN3 thymocyte) |
Children
| develops from: | CL:0000805 (immature single positive thymocyte) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000808 (DN4 thymocyte), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
