Personal tools

UBERON:0005294: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0005294
|alt_id=
|name=genital ridge
|namespace=
|def="The precursor to the gonads." [Wikipedia:Gonadal_ridge]
|xref=AAO:0011047;;EHDAA2:0004044;;http://upload.wikimedia.org/wikipedia/commons/3/30/Gray1106.png;;http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Gray1106.png/200px-Gray1106.png;;ncithesaurus:Gonadal_Ridge;;SCTID:361399001;;XAO:0000018
|is_a=UBERON:0005423
|synonym="crista gonadalis" RELATED LATIN [Wikipedia:Gonadal_ridge];;"gonadal ridge" EXACT [Wikipedia:Gonadal_ridge]
|comment=TODO - check developmental relationships. merge with urogenital ridge?
|comment=TODO - check developmental relationships. merge with urogenital ridge?
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="The precursor to the gonads." [Wikipedia:Gonadal_ridge]
|subset=
|derives_from=
|derives_from=
|develops_from=UBERON:0004876
|develops_from=UBERON:0004876
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0005294
|is_a=UBERON:0005423
|is_obsolete=
|located_in=
|located_in=
|name=genital ridge
|namespace=
|obo_creation_date=
|part_of=UBERON:0000922;;UBERON:0004122
|part_of=UBERON:0000922;;UBERON:0004122
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="crista gonadalis" RELATED LATIN [Wikipedia:Gonadal_ridge];;"gonadal ridge" EXACT [Wikipedia:Gonadal_ridge]
|union_of=
|xref=AAO:0011047;;EHDAA2:0004044;;http://upload.wikimedia.org/wikipedia/commons/3/30/Gray1106.png;;http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Gray1106.png/200px-Gray1106.png;;ncithesaurus:Gonadal_Ridge;;SCTID:361399001;;XAO:0000018
}}
}}

Revision as of 11:35, 12 September 2014

Name:genital ridge
Definition:"The precursor to the gonads." [Wikipedia:Gonadal_ridge]
Xrefs:
links:

AAO:0011047
EHDAA2:0004044
[ Gray1106.png Gray1106.png]
[ 200px-Gray1106.png 200px-Gray1106.png]
ncithesaurus:Gonadal_Ridge
SCTID:361399001

XAO:0000018
Synonyms: "crista gonadalis" RELATED LATIN [Wikipedia:Gonadal_ridge]
"gonadal ridge" EXACT [Wikipedia:Gonadal_ridge]
Comments:TODO - check developmental relationships. merge with urogenital ridge?

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0005423(developing anatomical structure)
develops_from:UBERON:0004876(urogenital ridge)
part_of:UBERON:0000922(embryo),UBERON:0004122(genitourinary system)



Children

develops from:UBERON:0005295 (sex cord)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005294 (genital ridge), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr11:27721743..27721753,-#_e3de7ac9257e5b9a7af5412b6aa614fep26@BDNF
5.42e-195FFCP PHASE2:Hg19::chr11:27721743..27721753,-#_e3de7ac9257e5b9a7af5412b6aa614fep26@BDNF
9.37e-99FFCP PHASE1:Hg19::chr1:227505905..227505906,-#_e2ab82c1a3a13a148fcf2ce95774640fp43@CDC42BPA
9.37e-99FFCP PHASE1:Hg19::chr3:158450428..158450431,-#_e2ab82c1a3a13a148fcf2ce95774640fp9@RARRES1
9.37e-99FFCP PHASE2:Hg19::chr3:158450428..158450431,-#_e2ab82c1a3a13a148fcf2ce95774640fp9@RARRES1
9.37e-99FFCP PHASE2:Hg19::chr1:227505905..227505906,-#_e2ab82c1a3a13a148fcf2ce95774640fp43@CDC42BPA
2.55e-98FFCP PHASE2:Hg19::chr19:40320572..40320586,-#_1cfae7ea13896c2eb65fa650082f2973p@chr19:40320572..40320586, -
2.55e-98FFCP PHASE2:Hg19::chr2:9519086..9519101,+#_1cfae7ea13896c2eb65fa650082f2973p@chr2:9519086..9519101, +
2.55e-98FFCP PHASE2:Hg19::chr3:193356854..193356864,+#_1cfae7ea13896c2eb65fa650082f2973p@chr3:193356854..193356864, +
2.55e-98FFCP PHASE2:Hg19::chr3:170430340..170430344,+#_1cfae7ea13896c2eb65fa650082f2973p@chr3:170430340..170430344, +
2.55e-98FFCP PHASE1:Hg19::chr8:47529304..47529311,-#_1cfae7ea13896c2eb65fa650082f2973p@chr8:47529304..47529311, -
2.55e-98FFCP PHASE2:Hg19::chr7:89874193..89874199,+#_1cfae7ea13896c2eb65fa650082f2973p7@C7orf63
2.55e-98FFCP PHASE1:Hg19::chr8:69832864..69832865,+#_1cfae7ea13896c2eb65fa650082f2973p@chr8:69832864..69832865, +
2.55e-98FFCP PHASE2:Hg19::chr8:47529304..47529311,-#_1cfae7ea13896c2eb65fa650082f2973p@chr8:47529304..47529311, -
2.55e-98FFCP PHASE2:Hg19::chr13:53030077..53030083,-#_1cfae7ea13896c2eb65fa650082f2973p@chr13:53030077..53030083, -
2.55e-98FFCP PHASE1:Hg19::chr19:54600897..54600899,+#_1cfae7ea13896c2eb65fa650082f2973p@chr19:54600897..54600899, +
2.55e-98FFCP PHASE1:Hg19::chr19:40320572..40320586,-#_1cfae7ea13896c2eb65fa650082f2973p@chr19:40320572..40320586, -
2.55e-98FFCP PHASE1:Hg19::chr13:53030077..53030083,-#_1cfae7ea13896c2eb65fa650082f2973p@chr13:53030077..53030083, -
2.55e-98FFCP PHASE1:Hg19::chr7:18206831..18206833,+#_1cfae7ea13896c2eb65fa650082f2973p@chr7:18206831..18206833, +
2.55e-98FFCP PHASE2:Hg19::chr19:54600897..54600899,+#_1cfae7ea13896c2eb65fa650082f2973p@chr19:54600897..54600899, +
2.55e-98FFCP PHASE1:Hg19::chr3:193356854..193356864,+#_1cfae7ea13896c2eb65fa650082f2973p@chr3:193356854..193356864, +
2.55e-98FFCP PHASE1:Hg19::chr3:170430340..170430344,+#_1cfae7ea13896c2eb65fa650082f2973p@chr3:170430340..170430344, +
2.55e-98FFCP PHASE2:Hg19::chr8:69832864..69832865,+#_1cfae7ea13896c2eb65fa650082f2973p@chr8:69832864..69832865, +
2.55e-98FFCP PHASE1:Hg19::chr2:9519086..9519101,+#_1cfae7ea13896c2eb65fa650082f2973p@chr2:9519086..9519101, +
2.55e-98FFCP PHASE1:Hg19::chr7:89874193..89874199,+#_1cfae7ea13896c2eb65fa650082f2973p7@C7orf63
2.55e-98FFCP PHASE2:Hg19::chr7:18206831..18206833,+#_1cfae7ea13896c2eb65fa650082f2973p@chr7:18206831..18206833, +
1.23e-66FFCP PHASE2:Hg19::chr2:19551668..19551679,-#_f7a1185835113c6b72152809226bc1a3p@chr2:19551668..19551679, -
1.23e-66FFCP PHASE1:Hg19::chr2:19551668..19551679,-#_f7a1185835113c6b72152809226bc1a3p@chr2:19551668..19551679, -
2.39e-66FFCP PHASE2:Hg19::chr1:197889533..197889548,+#_a05f1271da746a7d9d393baa2cc850e6p@chr1:197889533..197889548, +
2.39e-66FFCP PHASE2:Hg19::chr2:72803155..72803204,-#_a05f1271da746a7d9d393baa2cc850e6p@chr2:72803155..72803204, -
2.39e-66FFCP PHASE1:Hg19::chr12:15815732..15815744,-#_a05f1271da746a7d9d393baa2cc850e6p21@EPS8
2.39e-66FFCP PHASE2:Hg19::chr12:15815732..15815744,-#_a05f1271da746a7d9d393baa2cc850e6p21@EPS8
2.39e-66FFCP PHASE1:Hg19::chr3:112931461..112931474,-#_a05f1271da746a7d9d393baa2cc850e6p@chr3:112931461..112931474, -
2.39e-66FFCP PHASE1:Hg19::chr7:98445585..98445594,-#_a05f1271da746a7d9d393baa2cc850e6p22@TMEM130
2.39e-66FFCP PHASE2:Hg19::chr3:112931461..112931474,-#_a05f1271da746a7d9d393baa2cc850e6p@chr3:112931461..112931474, -
2.39e-66FFCP PHASE1:Hg19::chr1:197889533..197889548,+#_a05f1271da746a7d9d393baa2cc850e6p@chr1:197889533..197889548, +
2.39e-66FFCP PHASE2:Hg19::chr7:98445585..98445594,-#_a05f1271da746a7d9d393baa2cc850e6p22@TMEM130
2.39e-66FFCP PHASE1:Hg19::chr2:72803155..72803204,-#_a05f1271da746a7d9d393baa2cc850e6p@chr2:72803155..72803204, -
4.66e-66FFCP PHASE2:Hg19::chr10:1034666..1034675,+#_bcfc4f5a40216061ce40ecf557e8c735p4@GTPBP4
4.66e-66FFCP PHASE2:Hg19::chr8:141728731..141728740,-#_bcfc4f5a40216061ce40ecf557e8c735p38@PTK2
4.66e-66FFCP PHASE1:Hg19::chr5:90830481..90830492,+#_bcfc4f5a40216061ce40ecf557e8c735p@chr5:90830481..90830492, +
4.66e-66FFCP PHASE2:Hg19::chr5:75912402..75912418,-#_bcfc4f5a40216061ce40ecf557e8c735p@chr5:75912402..75912418, -
4.66e-66FFCP PHASE2:Hg19::chr3:99984127..99984138,+#_bcfc4f5a40216061ce40ecf557e8c735p@chr3:99984127..99984138, +
4.66e-66FFCP PHASE1:Hg19::chr10:1034666..1034675,+#_bcfc4f5a40216061ce40ecf557e8c735p4@GTPBP4
4.66e-66FFCP PHASE2:Hg19::chr5:90830481..90830492,+#_bcfc4f5a40216061ce40ecf557e8c735p@chr5:90830481..90830492, +
4.66e-66FFCP PHASE1:Hg19::chr3:170916991..170916995,-#_bcfc4f5a40216061ce40ecf557e8c735p@chr3:170916991..170916995, -
4.66e-66FFCP PHASE1:Hg19::chr21:48080873..48080878,+#_bcfc4f5a40216061ce40ecf557e8c735p@chr21:48080873..48080878, +
4.66e-66FFCP PHASE2:Hg19::chr21:48080873..48080878,+#_bcfc4f5a40216061ce40ecf557e8c735p@chr21:48080873..48080878, +
4.66e-66FFCP PHASE1:Hg19::chr8:141728731..141728740,-#_bcfc4f5a40216061ce40ecf557e8c735p38@PTK2
4.66e-66FFCP PHASE1:Hg19::chr5:75912402..75912418,-#_bcfc4f5a40216061ce40ecf557e8c735p@chr5:75912402..75912418, -
4.66e-66FFCP PHASE1:Hg19::chr3:99984127..99984138,+#_bcfc4f5a40216061ce40ecf557e8c735p@chr3:99984127..99984138, +
4.66e-66FFCP PHASE2:Hg19::chr3:170916991..170916995,-#_bcfc4f5a40216061ce40ecf557e8c735p@chr3:170916991..170916995, -
6.41e-58FFCP PHASE2:Mm9::chr18:44264202..44264213,+#_ecd7453deb6d8a2cb02d793c519c9c00p4@Spink12
6.41e-58FFCP PHASE1:Mm9::chr18:44264202..44264213,+#_ecd7453deb6d8a2cb02d793c519c9c00p4@Spink12
1.46e-50FFCP PHASE1:Hg19::chr11:114173606..114173612,+#_b41385a4757dc3422a5f5b5b58f4044dp@chr11:114173606..114173612, +
1.46e-50FFCP PHASE2:Hg19::chr2:177009137..177009140,+#_b41385a4757dc3422a5f5b5b58f4044dp@chr2:177009137..177009140, +
1.46e-50FFCP PHASE1:Hg19::chr6:134210772..134210782,+#_b41385a4757dc3422a5f5b5b58f4044dp8@TCF21
1.46e-50FFCP PHASE2:Hg19::chr6:134210772..134210782,+#_b41385a4757dc3422a5f5b5b58f4044dp8@TCF21
1.46e-50FFCP PHASE1:Hg19::chr2:177009137..177009140,+#_b41385a4757dc3422a5f5b5b58f4044dp@chr2:177009137..177009140, +
1.46e-50FFCP PHASE2:Hg19::chr11:114173606..114173612,+#_b41385a4757dc3422a5f5b5b58f4044dp@chr11:114173606..114173612, +
2.42e-50FFCP PHASE1:Hg19::chr5:144875561..144875565,+#_3d6176df4a58efdff931fc17a1fff9d7p@chr5:144875561..144875565, +
2.42e-50FFCP PHASE1:Hg19::chr3:46477553..46477563,-#_3d6176df4a58efdff931fc17a1fff9d7p@chr3:46477553..46477563, -
2.42e-50FFCP PHASE1:Hg19::chr7:137564648..137564658,-#_3d6176df4a58efdff931fc17a1fff9d7p32@CREB3L2
2.42e-50FFCP PHASE1:Hg19::chr19:54024454..54024463,+#_3d6176df4a58efdff931fc17a1fff9d7p31@ZNF331
2.42e-50FFCP PHASE2:Hg19::chr5:144875561..144875565,+#_3d6176df4a58efdff931fc17a1fff9d7p@chr5:144875561..144875565, +
2.42e-50FFCP PHASE2:Hg19::chr7:137564648..137564658,-#_3d6176df4a58efdff931fc17a1fff9d7p32@CREB3L2
2.42e-50FFCP PHASE1:Hg19::chr21:17214724..17214740,+#_3d6176df4a58efdff931fc17a1fff9d7p11@USP25
2.42e-50FFCP PHASE1:Hg19::chr2:55459485..55459491,-#_3d6176df4a58efdff931fc17a1fff9d7p6@C2orf63
2.42e-50FFCP PHASE2:Hg19::chr3:46477553..46477563,-#_3d6176df4a58efdff931fc17a1fff9d7p@chr3:46477553..46477563, -
2.42e-50FFCP PHASE2:Hg19::chr19:54024454..54024463,+#_3d6176df4a58efdff931fc17a1fff9d7p31@ZNF331
2.42e-50FFCP PHASE2:Hg19::chr21:17214724..17214740,+#_3d6176df4a58efdff931fc17a1fff9d7p11@USP25
2.42e-50FFCP PHASE2:Hg19::chr2:55459485..55459491,-#_3d6176df4a58efdff931fc17a1fff9d7p6@C2orf63
2.42e-50FFCP PHASE2:Hg19::chr15:39288691..39288698,+#_3d6176df4a58efdff931fc17a1fff9d7p@chr15:39288691..39288698, +
2.42e-50FFCP PHASE1:Hg19::chr15:39288691..39288698,+#_3d6176df4a58efdff931fc17a1fff9d7p@chr15:39288691..39288698, +
3.99e-50FFCP PHASE2:Hg19::chr4:103969123..103969127,-#_c00478e6fd4fef513503299765b59e20p@chr4:103969123..103969127, -
3.99e-50FFCP PHASE2:Hg19::chr12:5198350..5198359,+#_c00478e6fd4fef513503299765b59e20p@chr12:5198350..5198359, +
3.99e-50FFCP PHASE1:Hg19::chr12:5198350..5198359,+#_c00478e6fd4fef513503299765b59e20p@chr12:5198350..5198359, +
3.99e-50FFCP PHASE2:Hg19::chr14:64804787..64804796,-#_c00478e6fd4fef513503299765b59e20p10@ESR2
3.99e-50FFCP PHASE1:Hg19::chr14:64804787..64804796,-#_c00478e6fd4fef513503299765b59e20p10@ESR2
3.99e-50FFCP PHASE2:Hg19::chr15:39420650..39420666,+#_c00478e6fd4fef513503299765b59e20p@chr15:39420650..39420666, +
3.99e-50FFCP PHASE1:Hg19::chr15:39420650..39420666,+#_c00478e6fd4fef513503299765b59e20p@chr15:39420650..39420666, +
3.99e-50FFCP PHASE2:Hg19::chr11:829412..829430,+#_c00478e6fd4fef513503299765b59e20p11@EFCAB4A
3.99e-50FFCP PHASE1:Hg19::chr11:829412..829430,+#_c00478e6fd4fef513503299765b59e20p11@EFCAB4A
3.99e-50FFCP PHASE1:Hg19::chr4:103969123..103969127,-#_c00478e6fd4fef513503299765b59e20p@chr4:103969123..103969127, -
6.58e-50FFCP PHASE1:Hg19::chr17:58165788..58165794,-#_4676faa7563fca5706d723db96e6c9c5p1@LOC645638
6.58e-50FFCP PHASE1:Hg19::chr16:1203194..1203207,+#_4676faa7563fca5706d723db96e6c9c5p3@CACNA1H
6.58e-50FFCP PHASE1:Hg19::chr7:92462738..92462749,-#_4676faa7563fca5706d723db96e6c9c5p51@CDK6
6.58e-50FFCP PHASE2:Hg19::chr14:50697797..50697820,-#_4676faa7563fca5706d723db96e6c9c5p13@SOS2
6.58e-50FFCP PHASE2:Hg19::chr17:58165788..58165794,-#_4676faa7563fca5706d723db96e6c9c5p1@LOC645638
6.58e-50FFCP PHASE1:Hg19::chr14:50697797..50697820,-#_4676faa7563fca5706d723db96e6c9c5p13@SOS2
6.58e-50FFCP PHASE2:Hg19::chr7:92462738..92462749,-#_4676faa7563fca5706d723db96e6c9c5p51@CDK6
6.58e-50FFCP PHASE2:Hg19::chr16:1203194..1203207,+#_4676faa7563fca5706d723db96e6c9c5p3@CACNA1H
4.52e-44FFCP PHASE1:Mm9::chr17:75581992..75582009,+#_dbe197d9361fa6006d2e32c9a6cb2866p@chr17:75581992..75582009, +
4.52e-44FFCP PHASE2:Mm9::chr17:75581992..75582009,+#_dbe197d9361fa6006d2e32c9a6cb2866p@chr17:75581992..75582009, +
6.62e-41FFCP PHASE1:Hg19::chr3:194214959..194214968,-#_776de302e560332560dcaab6d936f5e8p@chr3:194214959..194214968, -
6.62e-41FFCP PHASE2:Hg19::chr3:194214959..194214968,-#_776de302e560332560dcaab6d936f5e8p@chr3:194214959..194214968, -
9.91e-41FFCP PHASE2:Hg19::chr8:125193673..125193689,-#_55f45cfd3562b88b8ee98bd9ce0d804ep@chr8:125193673..125193689, -
9.91e-41FFCP PHASE2:Hg19::chr3:49139102..49139119,-#_55f45cfd3562b88b8ee98bd9ce0d804ep@chr3:49139102..49139119, -
9.91e-41FFCP PHASE1:Hg19::chr13:49549473..49549480,+#_55f45cfd3562b88b8ee98bd9ce0d804ep@chr13:49549473..49549480, +
9.91e-41FFCP PHASE2:Hg19::chr15:34522001..34522013,+#_55f45cfd3562b88b8ee98bd9ce0d804ep@chr15:34522001..34522013, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0005294&oldid=3274435"