Personal tools

UBERON:0010046: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0010046
|alt_id=
|name=entire pharyngeal arch associated mesenchyme
|namespace=
|def="The sum total of mesenchymal tissue in the pharyngeal arch region." [UBERON:cjm]
|xref=EHDAA2:0001459;;EMAPA:16550
|is_a=UBERON:0005291;;UBERON:0007524
|synonym="associated mesenchyme of pharyngeal region" EXACT [EMAPA:16550];;"entire branchial arch associated mesenchyme" EXACT [UBERON:cjm];;"pharyngeal arch associated mesenchyme" EXACT [EHDAA2:0001459]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="The sum total of mesenchymal tissue in the pharyngeal arch region." [UBERON:cjm]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0010046
|is_a=UBERON:0004119 ;;UBERON:0005291 ;;UBERON:0007524 ;;UBERON:0010314
|is_obsolete=
|located_in=
|located_in=
|name=entire pharyngeal arch associated mesenchyme
|namespace=
|obo_creation_date=
|part_of=UBERON:0008814
|part_of=UBERON:0008814
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="associated mesenchyme of pharyngeal region" EXACT [EMAPA:16550];;"entire branchial arch associated mesenchyme" EXACT [UBERON:cjm];;"pharyngeal arch associated mesenchyme" EXACT [EHDAA2:0001459]
|union_of=
|xref=EHDAA2:0001459;;EMAPA:16550
}}
}}

Revision as of 11:48, 12 September 2014

Name:entire pharyngeal arch associated mesenchyme
Definition:"The sum total of mesenchymal tissue in the pharyngeal arch region." [UBERON:cjm]
Xrefs:
links:

EHDAA2:0001459

EMAPA:16550
Synonyms: "associated mesenchyme of pharyngeal region" EXACT [EMAPA:16550]
"entire branchial arch associated mesenchyme" EXACT [UBERON:cjm]
"pharyngeal arch associated mesenchyme" EXACT [EHDAA2:0001459]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004119(endoderm-derived structure),UBERON:0005291(embryonic tissue),UBERON:0007524(dense mesenchyme tissue),UBERON:0010314(structure with developmental contribution from neural crest)
part_of:UBERON:0008814(pharyngeal arch system)



Children

part of:UBERON:0009494 (pharyngeal arch mesenchymal region),UBERON:0010359 (pharyngeal arch mesenchyme from neural crest)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0010046 (entire pharyngeal arch associated mesenchyme), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr17:54893192..54893195,-#_2508a78257f676e7a0d635ba6c2b463cp14@C17orf67
5.42e-195FFCP PHASE2:Hg19::chr17:54893192..54893195,-#_2508a78257f676e7a0d635ba6c2b463cp14@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr8:57353655..57353662,-#_700415fabca4ed2c1df673b701082f85p@chr8:57353655..57353662, -
9.37e-99FFCP PHASE1:Hg19::chr17:54893292..54893300,-#_700415fabca4ed2c1df673b701082f85p13@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893269..54893278,-#_700415fabca4ed2c1df673b701082f85p11@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893292..54893300,-#_700415fabca4ed2c1df673b701082f85p13@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr8:57353655..57353662,-#_700415fabca4ed2c1df673b701082f85p@chr8:57353655..57353662, -
9.37e-99FFCP PHASE1:Hg19::chr17:54893213..54893220,-#_700415fabca4ed2c1df673b701082f85p12@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893269..54893278,-#_700415fabca4ed2c1df673b701082f85p11@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893213..54893220,-#_700415fabca4ed2c1df673b701082f85p12@C17orf67
2.39e-66FFCP PHASE2:Hg19::chr5:75912402..75912418,-#_597df48b0c99b9dea0b0c154cd7150ccp@chr5:75912402..75912418, -
2.39e-66FFCP PHASE1:Hg19::chr4:151503647..151503656,+#_597df48b0c99b9dea0b0c154cd7150ccp14@MAB21L2
2.39e-66FFCP PHASE2:Hg19::chr4:151503647..151503656,+#_597df48b0c99b9dea0b0c154cd7150ccp14@MAB21L2
2.39e-66FFCP PHASE1:Hg19::chr5:75912402..75912418,-#_597df48b0c99b9dea0b0c154cd7150ccp@chr5:75912402..75912418, -
4.66e-66FFCP PHASE2:Hg19::chr4:151505582..151505614,+#_72077ecc8cc0189cc9628f6767e82266p@chr4:151505582..151505614, +
4.66e-66FFCP PHASE1:Hg19::chr4:151505582..151505614,+#_72077ecc8cc0189cc9628f6767e82266p@chr4:151505582..151505614, +
1.46e-50FFCP PHASE1:Hg19::chr3:157823323..157823328,+#_2b915803edc2e92935266c9ccef2d23fp17@RSRC1
1.46e-50FFCP PHASE1:Hg19::chr8:57354278..57354286,+#_2b915803edc2e92935266c9ccef2d23fp@chr8:57354278..57354286, +
1.46e-50FFCP PHASE1:Hg19::chr17:54893196..54893207,-#_2b915803edc2e92935266c9ccef2d23fp9@C17orf67
1.46e-50FFCP PHASE2:Hg19::chr8:57354278..57354286,+#_2b915803edc2e92935266c9ccef2d23fp@chr8:57354278..57354286, +
1.46e-50FFCP PHASE2:Hg19::chr17:54893196..54893207,-#_2b915803edc2e92935266c9ccef2d23fp9@C17orf67
1.46e-50FFCP PHASE2:Hg19::chr3:157823323..157823328,+#_2b915803edc2e92935266c9ccef2d23fp17@RSRC1
2.42e-50FFCP PHASE2:Hg19::chr8:57802672..57802682,-#_1fe46f818b83c8e39373db7b8f1703d5p@chr8:57802672..57802682, -
2.42e-50FFCP PHASE1:Hg19::chr8:57802672..57802682,-#_1fe46f818b83c8e39373db7b8f1703d5p@chr8:57802672..57802682, -
3.99e-50FFCP PHASE1:Hg19::chr12:85673913..85673919,+#_bf814cc8904a6bca2a8f800e32b980b8p7@ALX1
3.99e-50FFCP PHASE1:Hg19::chr17:76930661..76930674,+#_bf814cc8904a6bca2a8f800e32b980b8p1@AK123925
3.99e-50FFCP PHASE1:Hg19::chr5:75913767..75913778,-#_bf814cc8904a6bca2a8f800e32b980b8p@chr5:75913767..75913778, -
3.99e-50FFCP PHASE2:Hg19::chr17:76930661..76930674,+#_bf814cc8904a6bca2a8f800e32b980b8p1@AK123925
3.99e-50FFCP PHASE2:Hg19::chr5:75913767..75913778,-#_bf814cc8904a6bca2a8f800e32b980b8p@chr5:75913767..75913778, -
3.99e-50FFCP PHASE2:Hg19::chr12:85673913..85673919,+#_bf814cc8904a6bca2a8f800e32b980b8p7@ALX1
6.58e-50FFCP PHASE2:Hg19::chr13:28961248..28961262,-#_6a5f132323d66ca717c33038b07e55a8p23@FLT1
6.58e-50FFCP PHASE1:Hg19::chr13:28961248..28961262,-#_6a5f132323d66ca717c33038b07e55a8p23@FLT1
6.58e-50FFCP PHASE2:Hg19::chr2:33519090..33519092,+#_6a5f132323d66ca717c33038b07e55a8p@chr2:33519090..33519092, +
6.58e-50FFCP PHASE1:Hg19::chr2:33519090..33519092,+#_6a5f132323d66ca717c33038b07e55a8p@chr2:33519090..33519092, +
6.62e-41FFCP PHASE2:Hg19::chr8:57353666..57353675,-#_d2b016ae03339f258b1b363c18dac4f2p@chr8:57353666..57353675, -
6.62e-41FFCP PHASE1:Hg19::chr8:57353779..57353790,-#_d2b016ae03339f258b1b363c18dac4f2p@chr8:57353779..57353790, -
6.62e-41FFCP PHASE1:Hg19::chr8:57354143..57354152,+#_d2b016ae03339f258b1b363c18dac4f2p@chr8:57354143..57354152, +
6.62e-41FFCP PHASE1:Hg19::chr8:57353666..57353675,-#_d2b016ae03339f258b1b363c18dac4f2p@chr8:57353666..57353675, -
6.62e-41FFCP PHASE2:Hg19::chr8:57354143..57354152,+#_d2b016ae03339f258b1b363c18dac4f2p@chr8:57354143..57354152, +
6.62e-41FFCP PHASE2:Hg19::chr8:57353779..57353790,-#_d2b016ae03339f258b1b363c18dac4f2p@chr8:57353779..57353790, -
1.48e-40FFCP PHASE1:Hg19::chr1:75600308..75600316,+#_ff1a18c3b78f6c089acc1bae4bada67fp8@LHX8
1.48e-40FFCP PHASE2:Hg19::chr1:6615391..6615401,+#_ff1a18c3b78f6c089acc1bae4bada67fp2@TAS1R1
1.48e-40FFCP PHASE2:Hg19::chr1:75600308..75600316,+#_ff1a18c3b78f6c089acc1bae4bada67fp8@LHX8
1.48e-40FFCP PHASE1:Hg19::chr20:49253452..49253461,-#_ff1a18c3b78f6c089acc1bae4bada67fp12@FAM65C
1.48e-40FFCP PHASE1:Hg19::chr1:6615391..6615401,+#_ff1a18c3b78f6c089acc1bae4bada67fp2@TAS1R1
1.48e-40FFCP PHASE2:Hg19::chr20:49253452..49253461,-#_ff1a18c3b78f6c089acc1bae4bada67fp12@FAM65C
2.21e-40FFCP PHASE1:Hg19::chr16:67687543..67687559,-#_4ec2c5b860fa7fe847be03718ba90655p@chr16:67687543..67687559, -
2.21e-40FFCP PHASE2:Hg19::chr5:75912831..75912842,-#_4ec2c5b860fa7fe847be03718ba90655p@chr5:75912831..75912842, -
2.21e-40FFCP PHASE2:Hg19::chr16:67687543..67687559,-#_4ec2c5b860fa7fe847be03718ba90655p@chr16:67687543..67687559, -
2.21e-40FFCP PHASE1:Hg19::chr5:75912831..75912842,-#_4ec2c5b860fa7fe847be03718ba90655p@chr5:75912831..75912842, -
3.3e-40FFCP PHASE1:Hg19::chr6:46190219..46190230,-#_798b1df08e9dd317ac0daa2aa97fe1cep@chr6:46190219..46190230, -
3.3e-40FFCP PHASE2:Hg19::chr9:125165007..125165016,+#_798b1df08e9dd317ac0daa2aa97fe1cep@chr9:125165007..125165016, +
3.3e-40FFCP PHASE2:Hg19::chr6:46190219..46190230,-#_798b1df08e9dd317ac0daa2aa97fe1cep@chr6:46190219..46190230, -
3.3e-40FFCP PHASE1:Hg19::chr9:125165007..125165016,+#_798b1df08e9dd317ac0daa2aa97fe1cep@chr9:125165007..125165016, +
1.84e-34FFCP PHASE2:Hg19::chr4:8594472..8594473,+#_783cb357cb5276e291c3220a415d3bddp4@CPZ
1.84e-34FFCP PHASE1:Hg19::chr8:57359557..57359570,-#_783cb357cb5276e291c3220a415d3bddp5@PENK
1.84e-34FFCP PHASE1:Hg19::chr10:15760985..15760992,-#_783cb357cb5276e291c3220a415d3bddp@chr10:15760985..15760992, -
1.84e-34FFCP PHASE2:Hg19::chr10:15760985..15760992,-#_783cb357cb5276e291c3220a415d3bddp@chr10:15760985..15760992, -
1.84e-34FFCP PHASE2:Hg19::chr8:57359557..57359570,-#_783cb357cb5276e291c3220a415d3bddp5@PENK
1.84e-34FFCP PHASE1:Hg19::chr4:8594472..8594473,+#_783cb357cb5276e291c3220a415d3bddp4@CPZ
2.58e-34FFCP PHASE2:Hg19::chr14:61125018..61125037,-#_15af2a9daf426eebc45b1dba21a30522p9@SIX1
2.58e-34FFCP PHASE1:Hg19::chr14:61125018..61125037,-#_15af2a9daf426eebc45b1dba21a30522p9@SIX1
5.05e-34FFCP PHASE1:Hg19::chr6:134327986..134327991,-#_24130e3f59f1967a1f0625425991a776p@chr6:134327986..134327991, -
5.05e-34FFCP PHASE2:Hg19::chr6:134327986..134327991,-#_24130e3f59f1967a1f0625425991a776p@chr6:134327986..134327991, -
7.06e-34FFCP PHASE1:Hg19::chr8:57353676..57353688,-#_92a5fd56bec2fd9e89f4ee68d8131080p@chr8:57353676..57353688, -
7.06e-34FFCP PHASE2:Hg19::chr13:58291223..58291226,+#_92a5fd56bec2fd9e89f4ee68d8131080p@chr13:58291223..58291226, +
7.06e-34FFCP PHASE1:Hg19::chr13:58291223..58291226,+#_92a5fd56bec2fd9e89f4ee68d8131080p@chr13:58291223..58291226, +
7.06e-34FFCP PHASE2:Hg19::chr8:57353676..57353688,-#_92a5fd56bec2fd9e89f4ee68d8131080p@chr8:57353676..57353688, -
9.85e-34FFCP PHASE1:Hg19::chrX:133792540..133792551,-#_fa519bee7d8a65332929b0a0d3c685d4p4@PLAC1
9.85e-34FFCP PHASE2:Hg19::chr5:127873659..127873667,-#_fa519bee7d8a65332929b0a0d3c685d4p12@FBN2
9.85e-34FFCP PHASE2:Hg19::chr5:19721484..19721507,-#_fa519bee7d8a65332929b0a0d3c685d4p@chr5:19721484..19721507, -
9.85e-34FFCP PHASE2:Hg19::chrX:133792540..133792551,-#_fa519bee7d8a65332929b0a0d3c685d4p4@PLAC1
9.85e-34FFCP PHASE1:Hg19::chr5:127873659..127873667,-#_fa519bee7d8a65332929b0a0d3c685d4p12@FBN2
9.85e-34FFCP PHASE1:Hg19::chr5:19721484..19721507,-#_fa519bee7d8a65332929b0a0d3c685d4p@chr5:19721484..19721507, -
7.48e-30FFCP PHASE2:Hg19::chr8:57353804..57353821,-#_50a17815b2b9e2f7909b9397529cf8b0p@chr8:57353804..57353821, -
7.48e-30FFCP PHASE1:Hg19::chr8:57353982..57353991,-#_50a17815b2b9e2f7909b9397529cf8b0p@chr8:57353982..57353991, -
7.48e-30FFCP PHASE2:Hg19::chr8:57354360..57354367,+#_50a17815b2b9e2f7909b9397529cf8b0p@chr8:57354360..57354367, +
7.48e-30FFCP PHASE2:Hg19::chr8:57353982..57353991,-#_50a17815b2b9e2f7909b9397529cf8b0p@chr8:57353982..57353991, -
7.48e-30FFCP PHASE1:Hg19::chr8:57353804..57353821,-#_50a17815b2b9e2f7909b9397529cf8b0p@chr8:57353804..57353821, -
7.48e-30FFCP PHASE1:Hg19::chr8:57354360..57354367,+#_50a17815b2b9e2f7909b9397529cf8b0p@chr8:57354360..57354367, +
9.99e-30FFCP PHASE2:Hg19::chr3:157824322..157824334,-#_b0531acb1ece9f640a5ab8209a891638p7@SHOX2
9.99e-30FFCP PHASE1:Hg19::chr10:15762107..15762114,-#_b0531acb1ece9f640a5ab8209a891638p10@ITGA8
9.99e-30FFCP PHASE2:Hg19::chr10:15762107..15762114,-#_b0531acb1ece9f640a5ab8209a891638p10@ITGA8
9.99e-30FFCP PHASE1:Hg19::chr3:157824322..157824334,-#_b0531acb1ece9f640a5ab8209a891638p7@SHOX2
1.33e-29FFCP PHASE1:Hg19::chrX:132670143..132670152,-#_f07014532e8e2d2c418abd73afae91e6p@chrX:132670143..132670152, -
1.33e-29FFCP PHASE1:Hg19::chr17:79071218..79071221,-#_f07014532e8e2d2c418abd73afae91e6p@chr17:79071218..79071221, -
1.33e-29FFCP PHASE1:Hg19::chr22:28193943..28193956,-#_f07014532e8e2d2c418abd73afae91e6p@chr22:28193943..28193956, -
1.33e-29FFCP PHASE2:Hg19::chrX:132670143..132670152,-#_f07014532e8e2d2c418abd73afae91e6p@chrX:132670143..132670152, -
1.33e-29FFCP PHASE2:Hg19::chr17:79071218..79071221,-#_f07014532e8e2d2c418abd73afae91e6p@chr17:79071218..79071221, -
1.33e-29FFCP PHASE2:Hg19::chr22:28193943..28193956,-#_f07014532e8e2d2c418abd73afae91e6p@chr22:28193943..28193956, -
1.78e-29FFCP PHASE1:Hg19::chr1:21904551..21904569,-#_3e6a5970818fa30ef0e0c016a105790dp@chr1:21904551..21904569, -
1.78e-29FFCP PHASE2:Hg19::chr1:21904551..21904569,-#_3e6a5970818fa30ef0e0c016a105790dp@chr1:21904551..21904569, -
3.16e-29FFCP PHASE1:Hg19::chr1:156470861..156470868,-#_460839d67581b150e799cbf990a461b9p18@MEF2D
3.16e-29FFCP PHASE1:Hg19::chr8:57359975..57359992,-#_460839d67581b150e799cbf990a461b9p@chr8:57359975..57359992, -
3.16e-29FFCP PHASE2:Hg19::chr1:156470861..156470868,-#_460839d67581b150e799cbf990a461b9p18@MEF2D
3.16e-29FFCP PHASE2:Hg19::chr14:89044406..89044416,+#_460839d67581b150e799cbf990a461b9p@chr14:89044406..89044416, +
3.16e-29FFCP PHASE1:Hg19::chr14:89044406..89044416,+#_460839d67581b150e799cbf990a461b9p@chr14:89044406..89044416, +
3.16e-29FFCP PHASE2:Hg19::chr8:57359975..57359992,-#_460839d67581b150e799cbf990a461b9p@chr8:57359975..57359992, -
4.2e-29FFCP PHASE2:Hg19::chr15:52606315..52606320,-#_804be6c0b7cf7dcddd2bd1d7488966c7p@chr15:52606315..52606320, -
4.2e-29FFCP PHASE1:Hg19::chr15:52606315..52606320,-#_804be6c0b7cf7dcddd2bd1d7488966c7p@chr15:52606315..52606320, -

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0010046&oldid=3274671"