MacroAPE 1083:ETV1 GIST48-ETV1-ChIP-Seq/Homer: Difference between revisions
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|PWM=PO;A;C;G;T!1;7309;3294;4238;2316!2;9660;1853;3740;1904!3;1390;13365;1990;412!4;6365;10191;395;206!5;223;206;16591;137!6;240;206;16522;189!7;16281;275;275...") |
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492e-11!10726-110A6;0.0139061!10018-101C9;0.128484!10086-102B5;0.364739!10182-103D2;3.42369e-05!10165-103B3;5.52369e-15!10499-107C4;3.26998e-13!10408-106B3;0.0788957!10019-101D1;0.00578683!10068-101I5;9.66008e-05!10075-102A3;1.07792e-07!10077-102A5;0.011034!10727-110A7;7.7843e-05!10775-110G1;2.44846e-15!10412-106B7;9.23737e-12!12231-129F8;0.770061!12232-129F9;1.44243e-09!12233-129G1;1.01592e-08!12234-129G2;4.45291e-09!10414-106B9;2.26141e-09!10170-103B8;0.962672!10183-103D3;2.14075e-13!10150-102I6;1.52894e-13!10174-103C3;1.03647e-12!10155-103A2;1.78889e-12!10038-101F2;6.19853e-13!10838-111E1;1.89685e-11!10759-110E3;1.07658e-05!10514-107E1;0.376349!10465-106H6;0.0196525!10691-109F7;0.0393542!10843-111E6;0.0687216!10844-111E7;0.0340708!11747-123G1;5.61185e-05!11748-123G2;0.490802!11749-123G3;0.0696324!11750-123G4;0.423763!11751-123G5;0.0140411!11840-124H4;0.000598911!11752-123G6;1.79241e-05!11753-123G7;0.753842!11754-123G8;0.00349877!11755-123G9;0.654174!11756-123H1;0.103151!11833-124G6;0.951502!11760-123H5;0.943249!11836-124G9;0.424027!11758-123H3;0.379678!11835-124G8;0.39283!11762-123H7;0.00060248!11838-124H2;0.00949561!11757-123H2;0.00030024!11759-123H4;0.669904!11761-123H6;0.579335!11842-124H6;0.030837!11837-124H1;0.00835164!10568-108B1;0.000114445!13230-141I8;0.103578!13231-141I9;0.000464023!10696-109G3;8.16802e-05!10493-107B7;0.0170707!10494-107B8;0.0883239!10850-111F4;0.216454!10851-111F5;0.0442519!10852-111F6;0.714712!10853-111F7;0.245566!10854-111F8;0.61484!10855-111F9;0.350482!10856-111G1;0.116281!10847-111F1;0.11106!10846-111E9;0.107933!10848-111F2;0.31524!10845-111E8;0.0856938!10857-111G2;0.0275231!10858-111G3;0.083313!10156-103A3;0.186369!11901-125F2;2.93452e-12!11902-125F3;2.88783e-08!11903-125F4;8.86603e-12!10689-109F5;3.80077e-17!10648-109A9;0.612589!10784-110H1;0.187095!10744-110C6;0.00665879!10772-110F7;3.54338e-21!10474-106I6;9.16586e-12!10600-108E6;2.42745e-17!10684-109E9;0.179344!12226-129F3;0.684474!12227-129F4;0.0394711!10508-107D4;5.6031e-10!10539-107G8;0.00429316!10607-108F4;0.0025101!10555-107I6;0.808404!10774-110F9;0.000397429!10637-108I7;0.244266!10663-109C6;0.0375165!10728-110A8;0.139451!10729-110A9;0.524289!10430-106D7;0.00027688!10730-110B1;0.00449817!10813-111B3;0.0863788!10812-111B2;2.88913e-07!10037-101F1;3.1263e-05!10172-103C1;4.79433e-13!10163-103B1;1.33063e-13!10076-102A4;1.04294e-12!10073-102A1;9.36921e-14!10036-101E9;3.15357e-16!10195-103E6;2.06122e-13!10277-104E7;1.288e-13!10434-106E2;1.22687e-13!10550-107I1;0.345096!10545-107H5;0.844597!10544-107H4;0.179537!10704-109H2;0.911233!10510-107D6;0.67484!10558-107I9;0.709618!10020-101D2;0.000342776!10732-110B3;2.73641e-11!10049-101G4;0.334125!10698-109G5;0.00120569!10437-106E5;0.0784619!10417-106C3;0.0941685!10035-101E8;0.530239!10171-103B9;1.37951e-13!10157-103A4;1.50502e-13!10034-101E7;1.49564e-12!10072-101I9;2.45992e-13!10199-103F1;8.83364e-18!10200-103F2;0.0364555!10697-109G4;7.58634e-11!10723-110A3;0.608269!10179-103C8;0.0328095!10160-103A7;7.97682e-13!10180-103C9;3.61622e-11!10162-103A9;3.70531e-08!10021-101D3;1.09136e-10!10840-111E3;1.78762e-06!10706-109H4;1.58307e-14!10033-101E6;0.0110229!10032-101E5;1.52027e-12!10490-107B4;1.94948e-13!10439-106E7;0.643338!10022-101D4;0.876285!10176-103C5;1.86753e-10!10469-106I1;3.81416e-14!10067-101I4;0.471178!10411-106B6;2.0466e-16!10471-106I3;0.531243!10030-101E3;0.474286!10475-106I7;3.45028e-11!10787-110H4;0.0866014!10477-106I9;0.467879!10695-109G2;0.00297736!11771-123I7;5.46699e-08!11772-123I8;0.000193022!11773-123I9;1.27641e-10!10093-102C3;5.544e-16!10442-106F1;0.00827204!10442-106F1;0.00166651!10201-103F3;0.0163501!10639-108I9;1.46414e-07!11843-124H7;5.74433e-07!11841-124H5;0.0690119!10693-109F9;0.0512696!10436-106E4;0.374712!10483-107A6;0.00743869!10282-104F3;0.00180498!10023-101D5;0.000196138!10066-101I3;5.91372e-08!10065-101I2;1.39443e-08!10800-110I8;2.26997e-13!10610-108F7;0.0463091!10841-111E4;1.88404e-06!10541-107H1;0.991053!10842-111E5;0.865874!10562-108A4;0.00214813!10024-101D6;9.29412e-05!10064-101I1;5.46673e-05!10609-108F6;3.66984e-09!10048-101G3;0.192483!10781-110G7;2.72746e-12!10181-103D1;0.977346!10159-103A6;1.12664e-12!10056-101H2;8.40613e-10!10737-110B8;1.77867e-17!10025-101D7;0.000497333!10044-101F8;0.00100501!10424-106D1;0.480587!10463-106H4;1.76372e-11!10616-108G4;0.17517!10486-107A9;2.20922e-17!10062-101H8;7.97317e-08!10202-103F4;2.27738e-08!10158-103A5;0.00523743!10441-106E9;6.81945e-10!10031-101E4;0.00507567!10063-101H9;3.352e-13!10063-101H9;3.04033e-16!11763-123H8;1.17213e-08!11765-123I1;8.47206e-08!11768-123I4;1.08723e-07!10807-111A6;0.000819498!10790-110H7;0.0706698!10798-110I6;0.500698!10786-110H3;0.921347!10591-108D6;0.0831746!10593-108D8;0.421068!10590-108D5;0.00976871!10026-101D8;0.849256!10096-102C6;2.1649e-20!10168-103B6;2.41116e-13!10154-103A1;4.22945e-13!10209-103G2;5.86001e-11!10061-101H7;1.33164e-07!10027-101D9;3.79572e-13!10043-101F7;5.20861e-09!10783-110G9;0.286965!10028-101E1;0.00357726!10060-101H6;1.04497e-07!10203-103F5;3.12772e-10!10059-101H5;1.17298e-08!10047-101G2;1.86214e-11!10029-101E2;0.800722!10058-101H4;9.5235e-05!10418-106C4;4.33041e-13!10492-107B6;0.111931!10694-109G1;0.446013!10797-110I5;1.91857e-07!10057-101H3;0.0552755!10100-102D1;4.18451e-12!10055-101H1;3.91909e-08!10204-103F6;1.45857e-18!10191-103E2;1.83662e-09!10563-108A5;0.0277849 | ||
|name=ETV1_GIST48-ETV1-ChIP-Seq/Homer | |name=ETV1_GIST48-ETV1-ChIP-Seq/Homer | ||
|tomtom_result=ELK4#MA0076.1;-1;3.43735e-08;1.63618e-05;3.21625e-05;9;AACCGGAAGT;ACCGGAAGT;+!Eip74EF#MA0026.1;-2;9.04007e-08;4.30307e-05;4.2293e-05;7;AACCGGAAGT;CCGGAAG;+!GABPA#MA0062.2;-1;3.90676e-06;0.00185962;0.00121849;9;AACCGGAAGT;ACCGGAAGAG;+!ELK1#MA0028.1;1;1.34104e-05;0.00638334;0.00313695;9;AACCGGAAGT;GAGCCGGAAG;+!FEV#MA0156.1;-2;1.78566e-05;0.00849976;0.00334161;8;AACCGGAAGT;CAGGAAAT;+!GABPA#MA0062.2;-2;2.8279e-05;0.0134608;0.00441001;8;AACCGGAAGT;CCGGAAGTGGC;+!SPI1#MA0080.2;-3;0.000154631;0.0736042;0.0206692;7;AACCGGAAGT;AGGAAGT;+!ELF5#MA0136.1;-2;0.000278729;0.132675;0.0326001;8;AACCGGAAGT;AAGGAAGTA;-!SPI1#MA0080.2;-3;0.000328229;0.156237;0.0327442;6;AACCGGAAGT;CGGAAG;+!IXR1#MA0323.1;1;0.000349952;0.166577;0.0327442;10;AACCGGAAGT;AAGCCGGAAGCGGGG;+!ETS1#MA0098.1;-3;0.000505273;0.24051;0.0429794;6;AACCGGAAGT;CGGAAA;-!LYS14#MA0325.1;-2;0.000637491;0.303446;0.0462215;8;AACCGGAAGT;CCGGAATT;+!ASG1#MA0275.1;-2;0.000642185;0.30568;0.0462215;6;AACCGGAAGT;CCGGAA;+!SPIB#MA0081.1;-1;0.000771238;0.367109;0.051545;7;AACCGGAAGT;AGAGGAA;+!YBR239C#MA0420.1;-1;0.00093645;0.44575;0.0584144;8;AACCGGAAGT;ACCGGAAC;+!CAT8#MA0280.1;-2;0.00119256;0.567658;0.0697407;6;AACCGGAAGT;CCGGAA;+!YKL222C#MA0428.1;-1;0.00279944;1.33254;0.154081;9;AACCGGAAGT;AACGGAAAT;+!YRM1#MA0438.1;-2;0.00391563;1.86384;0.188499;8;AACCGGAAGT;ACGGAAAT;+!GCR2#MA0305.1;-3;0.00402146;1.91422;0.188499;7;AACCGGAAGT;AGGAAGC;-!HAL9#MA0311.1;-3;0.00402913;1.91787;0.188499;5;AACCGGAAGT;CGGAA;+!YJL103C#MA0427.1;1;0.00451222;2.14781;0.201047;10;AACCGGAAGT;TCTCCGGAGCT;-!YER184C#MA0424.1;0;0.00538477;2.56315;0.229019;8;AACCGGAAGT;CTCCGGAA;+!Stat3#MA0144.1;1;0.00846996;4.0317;0.344572;9;AACCGGAAGT;TTCCAGGAAG;+!PEND#MA0127.1;0;0.0107226;5.10396;0.418038;10;AACCGGAAGT;AATAAGAAGT;-!ECM22#MA0292.1;0;0.0113884;5.42088;0.426236;7;AACCGGAAGT;CTCCGGA;+!STAT1#MA0137.2;4;0.0152619;7.26465;0.515044;10;AACCGGAAGT;CATTTCCCGGAAACC;+!SIP4#MA0380.1;-1;0.0154126;7.33639;0.515044;7;AACCGGAAGT;TCCGGAG;-!RDR1#MA0360.1;-1;0.018206;8.66607;0.567833;8;AACCGGAAGT;TGCGGAAC;+ | |||
}} | }} |
Latest revision as of 12:38, 7 September 2012
Full Name: ETV1_GIST48-ETV1-ChIP-Seq/Homer
Motif matrix | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
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|
Sample specificity
The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon
TomTom analysis
<br>Analyst: Michiel de Hoon and Hiroko Ohmiya
Target_ID | Optimal_offset | p-value | E-value | q-value | Overlap | Query consensus | Target consensus | Orientation |
---|---|---|---|---|---|---|---|---|
ELK4#MA0076.1 | -1 | 3.43735e-08 | 1.63618e-05 | 3.21625e-05 | 9 | AACCGGAAGT | ACCGGAAGT | + |
Eip74EF#MA0026.1 | -2 | 9.04007e-08 | 4.30307e-05 | 4.2293e-05 | 7 | AACCGGAAGT | CCGGAAG | + |
GABPA#MA0062.2 | -1 | 3.90676e-06 | 0.00185962 | 0.00121849 | 9 | AACCGGAAGT | ACCGGAAGAG | + |
ELK1#MA0028.1 | 1 | 1.34104e-05 | 0.00638334 | 0.00313695 | 9 | AACCGGAAGT | GAGCCGGAAG | + |
FEV#MA0156.1 | -2 | 1.78566e-05 | 0.00849976 | 0.00334161 | 8 | AACCGGAAGT | CAGGAAAT | + |
GABPA#MA0062.2 | -2 | 2.8279e-05 | 0.0134608 | 0.00441001 | 8 | AACCGGAAGT | CCGGAAGTGGC | + |
SPI1#MA0080.2 | -3 | 0.000154631 | 0.0736042 | 0.0206692 | 7 | AACCGGAAGT | AGGAAGT | + |
ELF5#MA0136.1 | -2 | 0.000278729 | 0.132675 | 0.0326001 | 8 | AACCGGAAGT | AAGGAAGTA | - |
SPI1#MA0080.2 | -3 | 0.000328229 | 0.156237 | 0.0327442 | 6 | AACCGGAAGT | CGGAAG | + |
IXR1#MA0323.1 | 1 | 0.000349952 | 0.166577 | 0.0327442 | 10 | AACCGGAAGT | AAGCCGGAAGCGGGG | + |
ETS1#MA0098.1 | -3 | 0.000505273 | 0.24051 | 0.0429794 | 6 | AACCGGAAGT | CGGAAA | - |
LYS14#MA0325.1 | -2 | 0.000637491 | 0.303446 | 0.0462215 | 8 | AACCGGAAGT | CCGGAATT | + |
ASG1#MA0275.1 | -2 | 0.000642185 | 0.30568 | 0.0462215 | 6 | AACCGGAAGT | CCGGAA | + |
SPIB#MA0081.1 | -1 | 0.000771238 | 0.367109 | 0.051545 | 7 | AACCGGAAGT | AGAGGAA | + |
YBR239C#MA0420.1 | -1 | 0.00093645 | 0.44575 | 0.0584144 | 8 | AACCGGAAGT | ACCGGAAC | + |
CAT8#MA0280.1 | -2 | 0.00119256 | 0.567658 | 0.0697407 | 6 | AACCGGAAGT | CCGGAA | + |
YKL222C#MA0428.1 | -1 | 0.00279944 | 1.33254 | 0.154081 | 9 | AACCGGAAGT | AACGGAAAT | + |
YRM1#MA0438.1 | -2 | 0.00391563 | 1.86384 | 0.188499 | 8 | AACCGGAAGT | ACGGAAAT | + |
GCR2#MA0305.1 | -3 | 0.00402146 | 1.91422 | 0.188499 | 7 | AACCGGAAGT | AGGAAGC | - |
HAL9#MA0311.1 | -3 | 0.00402913 | 1.91787 | 0.188499 | 5 | AACCGGAAGT | CGGAA | + |
YJL103C#MA0427.1 | 1 | 0.00451222 | 2.14781 | 0.201047 | 10 | AACCGGAAGT | TCTCCGGAGCT | - |
YER184C#MA0424.1 | 0 | 0.00538477 | 2.56315 | 0.229019 | 8 | AACCGGAAGT | CTCCGGAA | + |
Stat3#MA0144.1 | 1 | 0.00846996 | 4.0317 | 0.344572 | 9 | AACCGGAAGT | TTCCAGGAAG | + |
PEND#MA0127.1 | 0 | 0.0107226 | 5.10396 | 0.418038 | 10 | AACCGGAAGT | AATAAGAAGT | - |
ECM22#MA0292.1 | 0 | 0.0113884 | 5.42088 | 0.426236 | 7 | AACCGGAAGT | CTCCGGA | + |
STAT1#MA0137.2 | 4 | 0.0152619 | 7.26465 | 0.515044 | 10 | AACCGGAAGT | CATTTCCCGGAAACC | + |
SIP4#MA0380.1 | -1 | 0.0154126 | 7.33639 | 0.515044 | 7 | AACCGGAAGT | TCCGGAG | - |
RDR1#MA0360.1 | -1 | 0.018206 | 8.66607 | 0.567833 | 8 | AACCGGAAGT | TGCGGAAC | + |