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MacroAPE 1083:RORA f1: Difference between revisions

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10827-111C8;0.7445!10789-110H6;0.0690074!10828-111C9;0.311673!10788-110H5;0.0807579!10792-110H9;0.779409!10765-110E9;0.104079!10829-111D1;0.55008!10830-111D2;0.163764!10831-111D3;0.422981!10832-111D4;0.127202!10833-111D5;0.39077!10764-110E8;0.629203!10770-110F5;0.434404!10399-106A3;0.295891!10400-106A4;0.941238!10405-106A9;0.966354!10834-111D6;0.991368!10835-111D7;0.162136!10836-111D8;0.584789!10837-111D9;0.775941!10699-109G6;0.708069!10802-111A1;0.796079!10796-110I4;0.896078!10010-101C1;0.0528247!10810-111A9;0.00199457!10421-106C7;0.764116!10708-109H6;0.957782!12235-129G3;0.152487!12236-129G4;0.0186093!12237-129G5;0.0183509!10167-103B5;0.017872!10151-102I7;0.458443!10428-106D5;0.452065!10795-110I3;0.664939!10805-111A4;0.689099!10052-101G7;0.931805!10189-103D9;0.654406!10589-108D4;0.646458!10425-106D2;0.580146!10427-106D4;0.465214!10702-109G9;0.992194!10432-106D9;0.700579!10496-107C1;0.500956!10718-109I7;0.776733!10011-101C2;0.891756!10053-101G8;0.321342!10686-109F2;0.0395848!10084-102B3;0.890385!10012-101C3;0.427145!10085-102B4;0.460209!10482-107A5;0.214324!10419-106C5;0.677813!10080-102A8;0.648835!10760-110E4;0.0735399!10709-109H7;0.346209!10710-109H8;0.886948!10703-109H1;0.582902!10719-109I8;0.3094!10642-109A3;0.502636!10177-103C6;0.837132!10164-103B2;0.0568783!10173-103C2;0.155894!10166-103B4;0.114631!10083-102B2;0.101417!10188-103D8;0.0545144!10552-107I3;0.408103!10553-107I4;0.847564!10013-101C4;0.870668!10536-107G5;0.544663!10618-108G6;0.703885!10423-106C9;0.578567!10785-110H2;0.611734!12238-129G6;0.60256!12239-129G7;0.10981!12240-129G8;0.660249!10416-106C2;0.207426!10801-110I9;0.668557!10766-110F1;0.57392!10824-111C5;0.999773!10825-111C6;0.253918!10826-111C7;0.277801!10454-106G4;0.316334!10409-106B4;0.473763!10638-108I8;0.545051!10636-108I6;0.915547!10513-107D9;0.396693!10420-106C6;0.482786!10082-102B1;0.934676!10014-101C5;0.665512!10070-101I7;0.551821!10452-106G2;0.415451!10453-106G3;0.903457!10449-106F8;0.746775!10042-101F6;0.910089!10069-101I6;0.228676!10193-103E4;0.00234802!10631-108I1;0.240701!10438-106E6;0.668532!10488-107B2;0.907948!10196-103E7;0.255034!10071-101I8;0.607532!10071-101I8;0.784333!10041-101F5;0.40887!10451-106G1;0.60094!10450-106F9;0.610399!10604-108F1;0.318699!10605-108F2;0.877072!10606-108F3;0.725258!10603-108E9;0.914228!10497-107C2;0.895088!10448-106F7;0.530236!10643-109A4;0.496629!10426-106D3;0.107729!10431-106D8;0.127795!10197-103E8;0.731328!10443-106F2;0.369551!10815-111B5;0.647389!10816-111B6;0.405233!10817-111B7;0.516006!10015-101C6;0.431177!10410-106B5;0.293803!10054-101G9;0.0551566!10758-110E2;0.0217938!10711-109H9;0.26151!10040-101F4;0.213569!10470-106I2;0.503787!10415-106C1;0.504674!10198-103E9;0.0541293!10614-108G2;0.587997!10612-108F9;0.301549!10549-107H9;0.489086!10615-108G3;0.787526!10487-107B1;0.884!10433-106E1;0.257003!10688-109F4;0.252186!10444-106F3;0.633751!10444-106F3;0.908554!10485-107A8;0.847664!10413-106B8;0.468874!10175-103C4;0.762136!10161-103A8;0.0362503!12131-128D7;0.114583!10624-108H3;0.571137!10712-109I1;0.042975!10205-103F7;0.65446!10206-103F8;0.0903201!10207-103F9;0.122476!10050-101G5;0.151536!10051-101G6;0.00514397!10016-101C7;0.0176362!10046-101G1;0.0168466!10778-110G4;0.0286478!10633-108I3;0.888998!10818-111B8;0.20765!10819-111B9;0.753275!10820-111C1;0.724941!10484-107A7;0.796202!10808-111A7;0.738934!10169-103B7;0.942378!10153-102I9;0.59476!13425-144D5;0.432222!13433-144E4;0.260102!13437-144E8;0.140168!11904-125F5;0.150297!11905-125F6;0.421986!10039-101F3;0.447637!10791-110H8;0.605569!10017-101C8;0.600376!10045-101F9;0.847083!10509-107D5;0.829342!10839-111E2;0.905903!10692-109F8;0.427508!10079-102A7;0.620011!10078-102A6;0.0467594!10721-110A1;0.0697678!10569-108B2;0.694878!10570-108B3;0.457776!10571-108B4;0.351039!10647-109A8;0.178949!10752-110D5;0.985101!10782-110G8;0.307519!10726-110A6;0.262029!10018-101C9;0.621662!10086-102B5;0.801578!10182-103D2;0.0671831!10165-103B3;0.121729!10499-107C4;0.188361!10408-106B3;0.0478053!10019-101D1;0.009084!10068-101I5;0.459843!10075-102A3;0.38889!10077-102A5;0.57227!10727-110A7;0.356653!10775-110G1;0.815022!10412-106B7;0.884751!12231-129F8;0.631801!12232-129F9;0.0994914!12233-129G1;0.0142699!12234-129G2;0.0941245!10414-106B9;0.0152589!10170-103B8;0.818465!10183-103D3;0.477199!10150-102I6;0.444671!10174-103C3;0.405456!10155-103A2;0.0360454!10038-101F2;0.153984!10838-111E1;0.25313!10759-110E3;0.57695!10514-107E1;0.1299!10465-106H6;0.212433!10691-109F7;0.262529!10843-111E6;0.353829!10844-111E7;0.502652!11747-123G1;0.736144!11748-123G2;0.380349!11749-123G3;0.491773!11750-123G4;0.174528!11751-123G5;0.56575!11840-124H4;0.538692!11752-123G6;0.303281!11753-123G7;0.421658!11754-123G8;0.371857!11755-123G9;0.32843!11756-123H1;0.57599!11833-124G6;0.564355!11760-123H5;0.743207!11836-124G9;0.740835!11758-123H3;0.430927!11835-124G8;0.660494!11762-123H7;0.986112!11838-124H2;0.434013!11757-123H2;0.578176!11759-123H4;0.603438!11761-123H6;0.922952!11842-124H6;0.969858!11837-124H1;0.729601!10568-108B1;0.887858!13230-141I8;0.546097!13231-141I9;0.239884!10696-109G3;0.31056!10493-107B7;0.656576!10494-107B8;0.587605!10850-111F4;0.830684!10851-111F5;0.135911!10852-111F6;0.076179!10853-111F7;0.502625!10854-111F8;0.333146!10855-111F9;0.373416!10856-111G1;0.872714!10847-111F1;0.0941238!10846-111E9;0.0537644!10848-111F2;0.229968!10845-111E8;0.116677!10857-111G2;0.569986!10858-111G3;0.315048!10156-103A3;0.426474!11901-125F2;0.38888!11902-125F3;0.471969!11903-125F4;0.479916!10689-109F5;0.374067!10648-109A9;0.794667!10784-110H1;0.826832!10744-110C6;0.275803!10772-110F7;0.533319!10474-106I6;0.353772!10600-108E6;0.923278!10684-109E9;0.69178!12226-129F3;0.784305!12227-129F4;0.723948!10508-107D4;0.7284!10539-107G8;0.752274!10607-108F4;0.629774!10555-107I6;0.916241!10774-110F9;0.894296!10637-108I7;0.540869!10663-109C6;0.474175!10728-110A8;0.443297!10729-110A9;0.80872!10430-106D7;0.805486!10730-110B1;0.802772!10813-111B3;0.392401!10812-111B2;0.440253!10037-101F1;0.565248!10172-103C1;0.45406!10163-103B1;0.343526!10076-102A4;0.237141!10073-102A1;0.349243!10036-101E9;0.251555!10195-103E6;0.367857!10277-104E7;0.416767!10434-106E2;0.186314!10550-107I1;0.921432!10545-107H5;0.405806!10544-107H4;0.571772!10704-109H2;0.469402!10510-107D6;0.266626!10558-107I9;0.0551339!10020-101D2;0.988819!10732-110B3;0.0754831!10049-101G4;0.840569!10698-109G5;0.898527!10437-106E5;0.457517!10417-106C3;0.195108!10035-101E8;0.420086!10171-103B9;0.598367!10157-103A4;0.51474!10034-101E7;0.361041!10072-101I9;0.546736!10199-103F1;0.393634!10200-103F2;0.509738!10697-109G4;0.1149!10723-110A3;0.484984!10179-103C8;0.610324!10160-103A7;0.197275!10180-103C9;0.180484!10162-103A9;0.00170233!10021-101D3;0.0364061!10840-111E3;0.73323!10706-109H4;0.219774!10033-101E6;0.80361!10032-101E5;0.424035!10490-107B4;0.511146!10439-106E7;0.850542!10022-101D4;0.0963963!10176-103C5;0.303251!10469-106I1;0.135396!10067-101I4;0.179096!10411-106B6;0.515256!10471-106I3;0.535198!10030-101E3;0.554804!10475-106I7;0.0459733!10787-110H4;0.907016!10477-106I9;0.450541!10695-109G2;0.873263!11771-123I7;0.840583!11772-123I8;0.27393!11773-123I9;0.144408!10093-102C3;0.3602!10442-106F1;0.319627!10442-106F1;0.154987!10201-103F3;0.0972273!10639-108I9;0.80307!11843-124H7;0.664068!11841-124H5;0.776326!10693-109F9;0.125307!10436-106E4;0.820805!10483-107A6;0.541546!10282-104F3;0.26621!10023-101D5;0.00158181!10066-101I3;0.00098176!10065-101I2;0.018257!10800-110I8;0.0255435!10610-108F7;0.61833!10841-111E4;0.640364!10541-107H1;0.194889!10842-111E5;0.587669!10562-108A4;0.953237!10024-101D6;0.568977!10064-101I1;0.606824!10609-108F6;0.623746!10048-101G3;0.922958!10781-110G7;0.340706!10181-103D1;0.332518!10159-103A6;0.0956384!10056-101H2;0.199318!10737-110B8;0.0690104!10025-101D7;0.268376!10044-101F8;0.803401!10424-106D1;0.945584!10463-106H4;0.269041!10616-108G4;0.551751!10486-107A9;0.611092!10062-101H8;0.977911!10202-103F4;0.321874!10158-103A5;0.009858!10441-106E9;0.0534442!10031-101E4;0.870415!10063-101H9;0.572276!10063-101H9;0.296421!11763-123H8;0.578605!11765-123I1;0.265312!11768-123I4;0.401047!10807-111A6;0.269291!10790-110H7;0.876861!10798-110I6;0.757726!10786-110H3;0.755569!10591-108D6;0.459427!10593-108D8;0.383588!10590-108D5;0.0821902!10026-101D8;0.190238!10096-102C6;0.533194!10168-103B6;0.450064!10154-103A1;0.108019!10209-103G2;0.130334!10061-101H7;0.0699646!10027-101D9;0.0449305!10043-101F7;0.157524!10783-110G9;0.0440001!10028-101E1;0.447528!10060-101H6;0.613526!10203-103F5;0.242461!10059-101H5;0.0300215!10047-101G2;0.00674462!10029-101E2;0.0411908!10058-101H4;0.174401!10418-106C4;0.00827691!10492-107B6;0.733738!10694-109G1;0.168956!10797-110I5;0.120143!10057-101H3;0.903006!10100-102D1;0.022329!10055-101H1;0.662296!10204-103F6;0.759496!10191-103E2;0.201341!10563-108A5;0.00554338
|name=RORA_f1
|name=RORA_f1
|tomtom_result=RORA_2#MA0072.1;1;1.17009e-15;5.56963e-13;1.10776e-12;12;AAAACTAGGTCA;TATAAGTAGGTCAA;+!RORA_1#MA0071.1;-2;9.39156e-07;0.000447038;0.000444565;10;AAAACTAGGTCA;ATCAAGGTCA;+!kni#MA0451.1;-1;8.48952e-05;0.0404101;0.026791;11;AAAACTAGGTCA;AAACTAGAGCAC;+!PPARG#MA0066.1;-3;0.000251881;0.119895;0.059616;9;AAAACTAGGTCA;AGTAGGTCACCGTGACCTAC;-!NR4A2#MA0160.1;-5;0.000969712;0.461583;0.15301;7;AAAACTAGGTCA;AAGGTCAC;+!Esrrb#MA0141.1;0;0.00130702;0.62214;0.176771;12;AAAACTAGGTCA;AGCTCAAGGTCA;+!TGA1A#MA0129.1;-5;0.00192304;0.915369;0.227576;7;AAAACTAGGTCA;TACGTCA;+!ESR2#MA0258.1;-4;0.00255946;1.2183;0.269237;8;AAAACTAGGTCA;CAAGGTCACGGTGACCTG;+!CST6#MA0286.1;-4;0.00318799;1.51749;0.301818;8;AAAACTAGGTCA;TTACGTCAT;-!PPARG::RXRA#MA0065.2;-4;0.00535699;2.54993;0.429334;8;AAAACTAGGTCA;GTAGGGCAAAGGTCA;+!ESR1#MA0112.2;-1;0.00558176;2.65692;0.429334;11;AAAACTAGGTCA;GGCCCAGGTCACCCTGACCT;+!ESR1#MA0112.2;-4;0.00589537;2.8062;0.429334;8;AAAACTAGGTCA;CCAGGTCACCGTGACCCC;+!CUP9#MA0288.1;-3;0.00946465;4.50517;0.640036;9;AAAACTAGGTCA;AATGTGTCA;-!ttx-3::ceh-10#MA0263.1;0;0.0112365;5.34856;0.709196;12;AAAACTAGGTCA;TTAACGAAGCCAAT;-!bZIP910#MA0096.1;-6;0.0141613;6.74077;0.837935;6;AAAACTAGGTCA;ACGTCAT;-!RXR::RAR_DR5#MA0159.1;5;0.0165294;7.86801;0.920528;12;AAAACTAGGTCA;AGGTCATGGAGAGGTCA;+!TBF1#MA0403.1;-4;0.0194096;9.23896;0.994468;8;AAAACTAGGTCA;TTAGGGTT;-!AP1#MA0099.2;-5;0.0202888;9.65748;0.994468;7;AAAACTAGGTCA;TGAGTCA;-
}}
}}

Latest revision as of 13:02, 7 September 2012

Full Name: RORA_f1

Motif matrix
POACGT
151.570556241339428.99754365901447924.11671025291232729.355694333374778
251.614198930895952.247037582111594711.92490522340534348.254362750228054
3104.311593387604671.11379487974744934.3632478536317494.251868365657007
467.402638733833360.00.046.63786575280753
58.24573211518495546.2275934410882234.1575575113151225.409621419052783
69.7956516162632893.5000568218274735.74709440393907894.99770164461104
791.454764052785730.022.5857404338551360.0
80.00.0114.040504486640880.0
90.00.0114.040504486640880.0
100.00.00.0114.04050448664088
110.0113.260848070817640.00.7796564158232142
12114.040504486640880.00.00.0

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
RORA_2#MA0072.111.17009e-155.56963e-131.10776e-1212AAAACTAGGTCATATAAGTAGGTCAA+
RORA_1#MA0071.1-29.39156e-070.0004470380.00044456510AAAACTAGGTCAATCAAGGTCA+
kni#MA0451.1-18.48952e-050.04041010.02679111AAAACTAGGTCAAAACTAGAGCAC+
PPARG#MA0066.1-30.0002518810.1198950.0596169AAAACTAGGTCAAGTAGGTCACCGTGACCTAC-
NR4A2#MA0160.1-50.0009697120.4615830.153017AAAACTAGGTCAAAGGTCAC+
Esrrb#MA0141.100.001307020.622140.17677112AAAACTAGGTCAAGCTCAAGGTCA+
TGA1A#MA0129.1-50.001923040.9153690.2275767AAAACTAGGTCATACGTCA+
ESR2#MA0258.1-40.002559461.21830.2692378AAAACTAGGTCACAAGGTCACGGTGACCTG+
CST6#MA0286.1-40.003187991.517490.3018188AAAACTAGGTCATTACGTCAT-
PPARG::RXRA#MA0065.2-40.005356992.549930.4293348AAAACTAGGTCAGTAGGGCAAAGGTCA+
ESR1#MA0112.2-10.005581762.656920.42933411AAAACTAGGTCAGGCCCAGGTCACCCTGACCT+
ESR1#MA0112.2-40.005895372.80620.4293348AAAACTAGGTCACCAGGTCACCGTGACCCC+
CUP9#MA0288.1-30.009464654.505170.6400369AAAACTAGGTCAAATGTGTCA-
ttx-3::ceh-10#MA0263.100.01123655.348560.70919612AAAACTAGGTCATTAACGAAGCCAAT-
bZIP910#MA0096.1-60.01416136.740770.8379356AAAACTAGGTCAACGTCAT-
RXR::RAR_DR5#MA0159.150.01652947.868010.92052812AAAACTAGGTCAAGGTCATGGAGAGGTCA+
TBF1#MA0403.1-40.01940969.238960.9944688AAAACTAGGTCATTAGGGTT-
AP1#MA0099.2-50.02028889.657480.9944687AAAACTAGGTCATGAGTCA-
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