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MacroAPE 1083:TCSAGMT,motif441: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;225.504;2.088;2.088;1858.32!2;2.088;1718.424;2.088;365.4!3;2.088;1198.512;885.312;2.088!4;1350.936;2.088;732.888;2.088!5;150.336;238.032;169...")
 
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8-110H5;0.277403!10792-110H9;0.710883!10765-110E9;0.213751!10829-111D1;0.564419!10830-111D2;0.590701!10831-111D3;0.515814!10832-111D4;0.415509!10833-111D5;0.509727!10764-110E8;0.476152!10770-110F5;0.33014!10399-106A3;0.634782!10400-106A4;0.643027!10405-106A9;0.714856!10834-111D6;0.652494!10835-111D7;0.243149!10836-111D8;0.319442!10837-111D9;0.494187!10699-109G6;0.839815!10802-111A1;0.810501!10796-110I4;0.998283!10010-101C1;0.969142!10810-111A9;0.611336!10421-106C7;0.836214!10708-109H6;0.998807!12235-129G3;0.90142!12236-129G4;0.00256108!12237-129G5;0.283959!10167-103B5;0.0080152!10151-102I7;0.751299!10428-106D5;0.810281!10795-110I3;0.345102!10805-111A4;0.585268!10052-101G7;0.565838!10189-103D9;0.686848!10589-108D4;0.527753!10425-106D2;0.659474!10427-106D4;0.513446!10702-109G9;0.694006!10432-106D9;0.83716!10496-107C1;0.769825!10718-109I7;0.533468!10011-101C2;0.491361!10053-101G8;0.625465!10686-109F2;0.631852!10084-102B3;0.130748!10012-101C3;0.831379!10085-102B4;0.755562!10482-107A5;0.479033!10419-106C5;0.351043!10080-102A8;0.718707!10760-110E4;0.73746!10709-109H7;0.8003!10710-109H8;0.666026!10703-109H1;0.824401!10719-109I8;0.619769!10642-109A3;0.695051!10177-103C6;0.632268!10164-103B2;0.843719!10173-103C2;0.886771!10166-103B4;0.757634!10083-102B2;0.812949!10188-103D8;0.71182!10552-107I3;0.684218!10553-107I4;0.920004!10013-101C4;0.551371!10536-107G5;0.933024!10618-108G6;0.0570108!10423-106C9;0.494722!10785-110H2;0.438028!12238-129G6;0.83923!12239-129G7;0.169771!12240-129G8;0.335605!10416-106C2;0.163476!10801-110I9;0.613977!10766-110F1;0.387425!10824-111C5;0.673318!10825-111C6;0.852244!10826-111C7;0.841235!10454-106G4;0.947823!10409-106B4;0.925666!10638-108I8;0.554692!10636-108I6;0.685871!10513-107D9;0.89115!10420-106C6;0.215288!10082-102B1;0.535867!10014-101C5;0.284669!10070-101I7;0.642982!10452-106G2;0.854538!10453-106G3;0.495348!10449-106F8;0.484872!10042-101F6;0.573385!10069-101I6;0.861802!10193-103E4;0.855575!10631-108I1;0.830626!10438-106E6;0.793433!10488-107B2;0.914094!10196-103E7;0.953639!10071-101I8;0.953341!10071-101I8;0.584268!10041-101F5;0.413149!10451-106G1;0.694672!10450-106F9;0.577545!10604-108F1;0.880328!10605-108F2;0.656842!10606-108F3;0.752841!10603-108E9;0.560536!10497-107C2;0.56145!10448-106F7;0.0821506!10643-109A4;0.59746!10426-106D3;0.317904!10431-106D8;0.430939!10197-103E8;0.73641!10443-106F2;0.980848!10815-111B5;0.561418!10816-111B6;0.974429!10817-111B7;0.927947!10015-101C6;0.930112!10410-106B5;0.792353!10054-101G9;0.521903!10758-110E2;0.745063!10711-109H9;0.426584!10040-101F4;0.840554!10470-106I2;0.802149!10415-106C1;0.772586!10198-103E9;0.127013!10614-108G2;0.793536!10612-108F9;0.213826!10549-107H9;0.733768!10615-108G3;0.787787!10487-107B1;0.922514!10433-106E1;0.938113!10688-109F4;0.945878!10444-106F3;0.554274!10444-106F3;0.472832!10485-107A8;0.824976!10413-106B8;0.877657!10175-103C4;0.542535!10161-103A8;0.817173!12131-128D7;0.941665!10624-108H3;0.935759!10712-109I1;0.300656!10205-103F7;0.708546!10206-103F8;0.855973!10207-103F9;0.772738!10050-101G5;0.699263!10051-101G6;0.368899!10016-101C7;0.382618!10046-101G1;0.490738!10778-110G4;0.724419!10633-108I3;0.743582!10818-111B8;0.687132!10819-111B9;0.38119!10820-111C1;0.367462!10484-107A7;0.400473!10808-111A7;0.160912!10169-103B7;0.859151!10153-102I9;0.793415!13425-144D5;0.832286!13433-144E4;0.720729!13437-144E8;0.714686!11904-125F5;0.701377!11905-125F6;0.121861!10039-101F3;0.248281!10791-110H8;0.778883!10017-101C8;0.169168!10045-101F9;0.754883!10509-107D5;0.857355!10839-111E2;0.161141!10692-109F8;0.603715!10079-102A7;0.731226!10078-102A6;0.469054!10721-110A1;0.355527!10569-108B2;0.615061!10570-108B3;0.6323!10571-108B4;0.70069!10647-109A8;0.470727!10752-110D5;0.725345!10782-110G8;0.53738!10726-110A6;0.78913!10018-101C9;0.742107!10086-102B5;0.740757!10182-103D2;0.330221!10165-103B3;0.739275!10499-107C4;0.91119!10408-106B3;0.333254!10019-101D1;0.279514!10068-101I5;0.551624!10075-102A3;0.940857!10077-102A5;0.733509!10727-110A7;0.70354!10775-110G1;0.927011!10412-106B7;0.789899!12231-129F8;0.321824!12232-129F9;0.816872!12233-129G1;0.79176!12234-129G2;0.692209!10414-106B9;0.742061!10170-103B8;0.194113!10183-103D3;0.799865!10150-102I6;0.781976!10174-103C3;0.867299!10155-103A2;0.716013!10038-101F2;0.839484!10838-111E1;0.749004!10759-110E3;0.752526!10514-107E1;0.796358!10465-106H6;0.540502!10691-109F7;0.345404!10843-111E6;0.554012!10844-111E7;0.767017!11747-123G1;0.799111!11748-123G2;0.957104!11749-123G3;0.877351!11750-123G4;0.716827!11751-123G5;0.726971!11840-124H4;0.783038!11752-123G6;0.501904!11753-123G7;0.747387!11754-123G8;0.977827!11755-123G9;0.716337!11756-123H1;0.696784!11833-124G6;0.726165!11760-123H5;0.441392!11836-124G9;0.640893!11758-123H3;0.772962!11835-124G8;0.850078!11762-123H7;0.983947!11838-124H2;0.597767!11757-123H2;0.626779!11759-123H4;0.954859!11761-123H6;0.50922!11842-124H6;0.364255!11837-124H1;0.779296!10568-108B1;0.789844!13230-141I8;0.149349!13231-141I9;0.568914!10696-109G3;0.743291!10493-107B7;0.649994!10494-107B8;0.494253!10850-111F4;0.127607!10851-111F5;0.288316!10852-111F6;0.650534!10853-111F7;0.76251!10854-111F8;0.71407!10855-111F9;0.912103!10856-111G1;0.877619!10847-111F1;0.293973!10846-111E9;0.678469!10848-111F2;0.721497!10845-111E8;0.568447!10857-111G2;0.405755!10858-111G3;0.99375!10156-103A3;0.580583!11901-125F2;0.852631!11902-125F3;0.463018!11903-125F4;0.351167!10689-109F5;0.212623!10648-109A9;0.869773!10784-110H1;0.485981!10744-110C6;0.793221!10772-110F7;0.741919!10474-106I6;0.548693!10600-108E6;0.543109!10684-109E9;0.58373!12226-129F3;0.968284!12227-129F4;0.369881!10508-107D4;0.937427!10539-107G8;0.94513!10607-108F4;0.571494!10555-107I6;0.924609!10774-110F9;0.760213!10637-108I7;0.905013!10663-109C6;0.979388!10728-110A8;0.665821!10729-110A9;0.652391!10430-106D7;0.720789!10730-110B1;0.960758!10813-111B3;0.949372!10812-111B2;0.782682!10037-101F1;0.711158!10172-103C1;0.818006!10163-103B1;0.791481!10076-102A4;0.972683!10073-102A1;0.820207!10036-101E9;0.636283!10195-103E6;0.765555!10277-104E7;0.729145!10434-106E2;0.929212!10550-107I1;0.102759!10545-107H5;0.80995!10544-107H4;0.353147!10704-109H2;0.120198!10510-107D6;0.637941!10558-107I9;0.931856!10020-101D2;0.429291!10732-110B3;0.925972!10049-101G4;0.494893!10698-109G5;0.726328!10437-106E5;0.205997!10417-106C3;0.772988!10035-101E8;0.326473!10171-103B9;0.84076!10157-103A4;0.876958!10034-101E7;0.851612!10072-101I9;0.850029!10199-103F1;0.491829!10200-103F2;0.733986!10697-109G4;0.667729!10723-110A3;0.893385!10179-103C8;0.158211!10160-103A7;0.81654!10180-103C9;0.858919!10162-103A9;0.926212!10021-101D3;0.975677!10840-111E3;0.601819!10706-109H4;0.872937!10033-101E6;0.828404!10032-101E5;0.853586!10490-107B4;0.779599!10439-106E7;0.923441!10022-101D4;0.678487!10176-103C5;0.772787!10469-106I1;0.817828!10067-101I4;0.163548!10411-106B6;0.802517!10471-106I3;0.143745!10030-101E3;0.804095!10475-106I7;0.920942!10787-110H4;0.881321!10477-106I9;0.819308!10695-109G2;0.80589!11771-123I7;0.89301!11772-123I8;0.61983!11773-123I9;0.23102!10093-102C3;0.157174!10442-106F1;0.977664!10442-106F1;0.523223!10201-103F3;0.358517!10639-108I9;0.982113!11843-124H7;0.0467527!11841-124H5;0.766601!10693-109F9;0.659965!10436-106E4;0.365146!10483-107A6;0.92847!10282-104F3;0.758309!10023-101D5;0.905874!10066-101I3;0.812048!10065-101I2;0.809322!10800-110I8;0.800576!10610-108F7;0.749398!10841-111E4;0.633949!10541-107H1;0.497958!10842-111E5;0.702102!10562-108A4;0.854666!10024-101D6;0.440348!10064-101I1;0.872431!10609-108F6;0.987979!10048-101G3;0.662549!10781-110G7;0.99915!10181-103D1;0.355492!10159-103A6;0.652764!10056-101H2;0.877625!10737-110B8;0.649179!10025-101D7;0.573456!10044-101F8;0.380068!10424-106D1;0.710662!10463-106H4;0.796005!10616-108G4;0.174426!10486-107A9;0.206095!10062-101H8;0.216326!10202-103F4;0.878769!10158-103A5;0.94607!10441-106E9;0.985821!10031-101E4;0.602875!10063-101H9;0.707369!10063-101H9;0.566206!11763-123H8;0.577353!11765-123I1;0.487201!11768-123I4;0.512209!10807-111A6;0.622434!10790-110H7;0.53062!10798-110I6;0.728369!10786-110H3;0.567737!10591-108D6;0.792422!10593-108D8;0.882299!10590-108D5;0.407912!10026-101D8;0.697548!10096-102C6;0.484607!10168-103B6;0.582899!10154-103A1;0.733996!10209-103G2;0.892525!10061-101H7;0.529555!10027-101D9;0.710966!10043-101F7;0.654123!10783-110G9;0.60491!10028-101E1;0.601837!10060-101H6;0.978036!10203-103F5;0.89817!10059-101H5;0.733726!10047-101G2;0.908023!10029-101E2;0.578728!10058-101H4;0.662721!10418-106C4;0.961401!10492-107B6;0.552186!10694-109G1;0.5093!10797-110I5;0.582689!10057-101H3;0.312392!10100-102D1;0.703903!10055-101H1;0.932231!10204-103F6;0.749465!10191-103E2;0.975869!10563-108A5;0.269365
|name=TCSAGMT,motif441,CNhs12641,T:2088.0(64.56%),B:40638.0(54.10%),P:1e-32
|name=TCSAGMT,motif441,CNhs12641,T:2088.0(64.56%),B:40638.0(54.10%),P:1e-32
|tomtom_result=ECM22#MA0292.1;0;0.00179771;0.855708;1;7;TCCAGCT;TCCGGAG;-!ELK1#MA0028.1;2;0.00259303;1.23428;1;7;TCCAGCT;CTTCCGGCTC;-!XBP1#MA0414.1;1;0.00581786;2.7693;1;6;TCCAGCT;CTCGAGA;+!YER184C#MA0424.1;1;0.006305;3.00118;1;7;TCCAGCT;TTCCGGAG;-!ASG1#MA0275.1;1;0.014633;6.96531;1;5;TCCAGCT;TTCCGG;-!CAT8#MA0280.1;1;0.014633;6.96531;1;5;TCCAGCT;TTCCGG;-!SIP4#MA0380.1;1;0.0152552;7.26147;1;6;TCCAGCT;CTCCGGA;+!YJL103C#MA0427.1;2;0.0179927;8.56451;1;7;TCCAGCT;TCTCCGGAGCT;-
}}
}}

Latest revision as of 13:13, 7 September 2012

Full Name: TCSAGMT,motif441,CNhs12641,T:2088.0(64.56%),B:40638.0(54.10%),P:1e-32

Motif matrix
POACGT
1225.5042.0882.0881858.32
22.0881718.4242.088365.4
32.0881198.512885.3122.088
41350.9362.088732.8882.088
5150.336238.0321697.5442.088
6753.768812.232256.824265.176
72.088261586.7281238.184

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
ECM22#MA0292.100.001797710.85570817TCCAGCTTCCGGAG-
ELK1#MA0028.120.002593031.2342817TCCAGCTCTTCCGGCTC-
XBP1#MA0414.110.005817862.769316TCCAGCTCTCGAGA+
YER184C#MA0424.110.0063053.0011817TCCAGCTTTCCGGAG-
ASG1#MA0275.110.0146336.9653115TCCAGCTTTCCGG-
CAT8#MA0280.110.0146336.9653115TCCAGCTTTCCGG-
SIP4#MA0380.110.01525527.2614716TCCAGCTCTCCGGA+
YJL103C#MA0427.120.01799278.5645117TCCAGCTTCTCCGGAGCT-
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