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MacroAPE 1083:Motif GNCAAT: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!01;0;0;7584;0!02;1896;1896;1896;1896!03;0;7584;0;0!04;7584;0;0;0!05;7584;0;0;0!06;0;0;0;7584 |macroape_1083_sample_pvalues=11376-118A8;3.3393...")
 
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!10844-111E7;2.63989e-07!11747-123G1;6.07946e-08!11748-123G2;0.31356!11749-123G3;0.434864!11750-123G4;0.0391579!11751-123G5;0.0346927!11840-124H4;0.0104439!11752-123G6;0.000152304!11753-123G7;0.00821667!11754-123G8;0.0474587!11755-123G9;0.485567!11756-123H1;0.119505!11833-124G6;0.0488788!11760-123H5;0.0065788!11836-124G9;0.122246!11758-123H3;0.00907887!11835-124G8;0.00162411!11762-123H7;0.0101783!11838-124H2;0.0227307!11757-123H2;0.013826!11759-123H4;0.019941!11761-123H6;0.0545814!11842-124H6;0.542146!11837-124H1;0.0336151!10568-108B1;0.00516858!13230-141I8;0.0100068!13231-141I9;0.180334!10696-109G3;0.161123!10493-107B7;0.789675!10494-107B8;0.523829!10850-111F4;0.0788971!10851-111F5;0.256386!10852-111F6;0.0972456!10853-111F7;0.850785!10854-111F8;0.228587!10855-111F9;0.99143!10856-111G1;0.228989!10847-111F1;0.352798!10846-111E9;0.512113!10848-111F2;0.37615!10845-111E8;0.19593!10857-111G2;0.00343197!10858-111G3;0.0039198!10156-103A3;0.211994!11901-125F2;0.798293!11902-125F3;0.552036!11903-125F4;0.838744!10689-109F5;0.258094!10648-109A9;0.00525557!10784-110H1;0.0123099!10744-110C6;0.496627!10772-110F7;0.209193!10474-106I6;0.0481063!10600-108E6;0.873774!10684-109E9;0.00630205!12226-129F3;0.00883272!12227-129F4;0.938711!10508-107D4;0.529521!10539-107G8;0.0059262!10607-108F4;5.60397e-06!10555-107I6;7.96325e-06!10774-110F9;2.73181e-06!10637-108I7;7.25303e-05!10663-109C6;0.0305188!10728-110A8;0.00198451!10729-110A9;0.082925!10430-106D7;0.0310845!10730-110B1;0.0117975!10813-111B3;0.000177263!10812-111B2;0.917746!10037-101F1;0.0130189!10172-103C1;0.853603!10163-103B1;0.729396!10076-102A4;0.826481!10073-102A1;0.814128!10036-101E9;0.622662!10195-103E6;0.992011!10277-104E7;0.785316!10434-106E2;0.896041!10550-107I1;0.0511403!10545-107H5;0.000935533!10544-107H4;0.387469!10704-109H2;0.578647!10510-107D6;0.543717!10558-107I9;0.0209554!10020-101D2;0.000632095!10732-110B3;0.124341!10049-101G4;0.00173799!10698-109G5;0.197219!10437-106E5;0.0352104!10417-106C3;0.0278731!10035-101E8;0.330532!10171-103B9;0.832626!10157-103A4;0.78019!10034-101E7;0.629268!10072-101I9;0.907854!10199-103F1;0.458904!10200-103F2;0.0144887!10697-109G4;0.0330775!10723-110A3;0.563938!10179-103C8;0.144323!10160-103A7;0.22534!10180-103C9;0.39046!10162-103A9;0.00626029!10021-101D3;0.0774098!10840-111E3;0.0542621!10706-109H4;0.109524!10033-101E6;0.150933!10032-101E5;0.806366!10490-107B4;0.959687!10439-106E7;0.00236051!10022-101D4;0.00394063!10176-103C5;0.108642!10469-106I1;0.895544!10067-101I4;0.0183674!10411-106B6;0.626929!10471-106I3;0.428565!10030-101E3;0.530784!10475-106I7;0.400714!10787-110H4;4.80105e-07!10477-106I9;0.0102605!10695-109G2;0.00186599!11771-123I7;0.0156295!11772-123I8;0.466591!11773-123I9;0.486946!10093-102C3;0.243446!10442-106F1;0.0326766!10442-106F1;0.375733!10201-103F3;0.309911!10639-108I9;0.085659!11843-124H7;0.000615339!11841-124H5;0.914791!10693-109F9;0.271013!10436-106E4;0.0918716!10483-107A6;0.0357394!10282-104F3;0.0857276!10023-101D5;0.051629!10066-101I3;0.0513151!10065-101I2;0.0748989!10800-110I8;0.386812!10610-108F7;1.13467e-08!10841-111E4;9.83343e-08!10541-107H1;0.0013397!10842-111E5;5.17289e-05!10562-108A4;5.75901e-08!10024-101D6;6.71021e-06!10064-101I1;0.260042!10609-108F6;0.335414!10048-101G3;7.83715e-08!10781-110G7;0.0360004!10181-103D1;0.0043172!10159-103A6;0.702591!10056-101H2;0.741922!10737-110B8;0.779953!10025-101D7;0.0126751!10044-101F8;0.000611513!10424-106D1;0.0784916!10463-106H4;0.266773!10616-108G4;0.289589!10486-107A9;0.889167!10062-101H8;0.170717!10202-103F4;0.290464!10158-103A5;0.00441444!10441-106E9;0.79057!10031-101E4;1.43139e-09!10063-101H9;0.981496!10063-101H9;0.509967!11763-123H8;0.21248!11765-123I1;0.0621676!11768-123I4;0.0116416!10807-111A6;0.05345!10790-110H7;4.46302e-14!10798-110I6;1.2096e-10!10786-110H3;1.49475e-08!10591-108D6;3.47497e-08!10593-108D8;2.21092e-05!10590-108D5;0.00102351!10026-101D8;6.83947e-05!10096-102C6;0.418086!10168-103B6;0.00623234!10154-103A1;0.757298!10209-103G2;0.999092!10061-101H7;0.0479358!10027-101D9;0.220081!10043-101F7;0.484379!10783-110G9;0.423898!10028-101E1;0.520251!10060-101H6;0.0834846!10203-103F5;0.6223!10059-101H5;0.0713374!10047-101G2;0.168788!10029-101E2;0.168219!10058-101H4;0.0382025!10418-106C4;0.106968!10492-107B6;5.65057e-05!10694-109G1;0.0157603!10797-110I5;0.927617!10057-101H3;0.380066!10100-102D1;0.261813!10055-101H1;0.0568865!10204-103F6;0.519891!10191-103E2;0.0557024!10563-108A5;0.0235747
|name=motif_GNCAAT
|name=motif_GNCAAT
|tomtom_result=Sox17#MA0078.1;0;0.00318812;1.51755;1;6;GACAAT;GACAATGAG;-!Nobox#MA0125.1;0;0.00408335;1.94367;1;6;GACAAT;ACCAATTA;-!ttx-3::ceh-10#MA0263.1;8;0.0112193;5.34037;1;6;GACAAT;TTAACGAAGCCAAT;-!NFYA#MA0060.1;4;0.0155178;7.38649;1;6;GACAAT;CTCAGCCAATCAGCGC;+!Dr#MA0188.1;-1;0.0163708;7.79251;1;5;GACAAT;CCAATTA;+!HAP5#MA0316.1;0;0.0165922;7.89787;1;6;GACAAT;ACCAATCAGATCCCA;-!HAP3#MA0314.1;5;0.0172635;8.21744;1;6;GACAAT;TCTGAACCAATCAGA;-!ATHB-5#MA0110.1;-1;0.0196482;9.35255;1;5;GACAAT;CCAATTATT;+
}}
}}

Latest revision as of 13:20, 7 September 2012

Full Name: motif_GNCAAT

Motif matrix
POACGT
010075840
021896189618961896
030758400
047584000
057584000
060007584

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Sox17#MA0078.100.003188121.5175516GACAATGACAATGAG-
Nobox#MA0125.100.004083351.9436716GACAATACCAATTA-
ttx-3::ceh-10#MA0263.180.01121935.3403716GACAATTTAACGAAGCCAAT-
NFYA#MA0060.140.01551787.3864916GACAATCTCAGCCAATCAGCGC+
Dr#MA0188.1-10.01637087.7925115GACAATCCAATTA+
HAP5#MA0316.100.01659227.8978716GACAATACCAATCAGATCCCA-
HAP3#MA0314.150.01726358.2174416GACAATTCTGAACCAATCAGA-
ATHB-5#MA0110.1-10.01964829.3525515GACAATCCAATTATT+
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